Taxon Scaffold Gene1 Gene2 Consecutive Sep Code Strand1 Strand2 GNScore GNWithin GNAll GNMinus GOScore CAI CAI.Alm CBI COG COGanno COGfun Description nCAI nCAI.Alm nCBI nCOG nCOGanno nCOGfun nDescription COGsim forward forwardplus sumBias same bbfGNScore bbfGNMinus bbfGNWithin bbfGNAll bbfGOScore COGsimClass cfCOG pSame groupIndexD pSameD pOpLogistic pOpDistance pOp1 bOp1 pCAI pOp bOp pOp2 pSame pOpLogisticLike pOpLogisticM 107806 66 62018 62019 1 195 Same + + 22.5274094 -40.802489989 0 -4.601782e+01 51.7 1.404428 2.263866 0.7987235 445 NAD/FAD-utilizing enzyme apparently involved in cell division [Cell division and chromosome partitioning] D glucose inhibited division protein A 1.445504 2.296618 0.8113469 356 F0F1-type ATP synthase, subunit a [Energy production and conversion] C ATP synthase A chain - FALSE FALSE 1 TRUE 1.7504231 0.27189412 0.6022930 1.015497 0.8617829 N 0.7691331 0.6796992 7.88 0.1835642 0.49804701 0.2648088 0.182396321 FALSE 0.5 0.182396321 FALSE 0.091066419 0.6796992 0.30825307 0.5508794 107806 66 62019 62020 1 37 Same + + 190.3264061 445.790787816 0 1.056420e+03 9.0 1.445504 2.296618 0.8113469 356 F0F1-type ATP synthase, subunit a [Energy production and conversion] C ATP synthase A chain 1.569395 2.760910 1.0161854 636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion] C ATP synthase C chain C FALSE FALSE 2 TRUE 3.8157637 3.86281743 4.2713730 1.015497 1.9481131 Y 2.2813077 0.9954399 3.47 0.6452511 0.99512042 0.7445000 0.997311377 TRUE 0.5 0.997311377 TRUE 0.942250803 0.9954399 0.89970335 0.9921368 107806 66 62020 62021 1 119 Same + + 184.7864129 366.953318531 0 9.357383e+02 9.0 1.569395 2.760910 1.0161854 636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion] C ATP synthase C chain 1.386872 2.101802 0.7188267 711 F0F1-type ATP synthase, subunit b [Energy production and conversion] C ATP synthase B chain C FALSE FALSE 3 TRUE 3.7421514 3.67898292 3.9628442 1.015497 1.9481131 Y 2.2813077 0.9941940 6.54 0.1927957 0.99377950 0.2767412 0.974462041 TRUE 0.5 0.974462041 TRUE 0.675667554 0.9941940 0.89714320 0.9899976 107806 66 62021 62022 1 0 Same + + 200.9731014 385.574678382 0 1.028200e+03 9.0 1.386872 2.101802 0.7188267 711 F0F1-type ATP synthase, subunit b [Energy production and conversion] C ATP synthase B chain 1.384437 2.084282 0.7600817 712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion] C ATP synthase delta chain C FALSE FALSE 4 TRUE 3.8767088 3.77057211 4.0237547 1.015497 1.9481131 Y 2.2813077 0.9948230 0.79 0.9292673 0.99445684 0.9546420 0.999575901 TRUE 0.5 0.999575901 TRUE 0.991468718 0.9948230 0.89843537 0.9910771 107806 66 62022 62023 1 15 Same + + 291.4066777 603.297435818 0 1.504945e+03 9.0 1.384437 2.084282 0.7600817 712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion] C ATP synthase delta chain 1.405104 2.272302 0.7893512 56 F0F1-type ATP synthase, alpha subunit [Energy production and conversion] C ATP synthase alpha chain C FALSE FALSE 5 TRUE 4.1614210 4.38405354 5.1918439 1.015497 1.9481131 Y 2.2813077 0.9978297 1.99 0.9088937 0.99768321 0.9411141 0.999767283 TRUE 0.5 0.999767283 TRUE 0.989541690 0.9978297 0.90461977 0.9962511 107806 66 62023 62024 1 33 Same + + 348.0414706 643.257909297 0 1.844892e+03 9.0 1.405104 2.272302 0.7893512 56 F0F1-type ATP synthase, alpha subunit [Energy production and conversion] C ATP synthase alpha chain 1.508141 2.349176 0.8134069 224 F0F1-type ATP synthase, gamma subunit [Energy production and conversion] C ATP synthase gamma chain C FALSE FALSE 6 TRUE 4.2897424 4.74735127 5.4714363 1.015497 1.9481131 Y 2.2813077 0.9984752 3.28 0.6941833 0.99837336 0.7843183 0.999282746 TRUE 0.5 0.999282746 TRUE 0.956265408 0.9984752 0.90594903 0.9973650 107806 66 62024 62025 1 24 Same + + 315.3367812 608.361455559 0 1.622686e+03 9.0 1.508141 2.349176 0.8134069 224 F0F1-type ATP synthase, gamma subunit [Energy production and conversion] C ATP synthase gamma chain 1.382666 2.263166 0.7862457 55 F0F1-type ATP synthase, beta subunit [Energy production and conversion] C ATP synthase beta chain C FALSE FALSE 7 TRUE 4.1781280 4.51452753 5.2379050 1.015497 1.9481131 Y 2.2813077 0.9980330 2.75 0.8259129 0.99790064 0.8837257 0.999556759 TRUE 0.5 0.999556759 TRUE 0.978362172 0.9980330 0.90503829 0.9966018 107806 66 62025 62026 1 27 Same + + 234.1413435 477.749380029 0 1.112540e+03 9.0 1.382666 2.263166 0.7862457 55 F0F1-type ATP synthase, beta subunit [Energy production and conversion] C ATP synthase beta chain 1.332349 2.098368 0.7927119 355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion] C ATP synthase epsilon chain C FALSE FALSE 8 TRUE 4.0021307 3.97133069 4.5255759 1.015497 1.9481131 Y 2.2813077 0.9963049 2.92 0.7942362 0.99604949 0.8607955 0.998973532 TRUE 0.5 0.998973532 TRUE 0.972467082 0.9963049 0.90148211 0.9936244 107806 66 62027 62028 1 127 Same - - 114.2511293 -34.410416070 0 2.579951e+02 51.7 1.476445 2.246985 0.7781739 187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] L DNA gyrase subunit B 1.369180 2.115168 0.7298717 592 DNA polymerase sliding clamp subunit (PCNA homolog) [DNA replication, recombination, and repair] L DNA polymerase III beta chain L TRUE FALSE 8 TRUE 3.2797268 2.30341495 0.4431503 1.015497 0.8617829 Y 2.2813077 0.9315832 6.74 0.1867797 0.92177187 0.2689786 0.730191870 TRUE 0.5 0.730191870 TRUE 0.436030972 0.9315832 0.77096819 0.8872648 107806 66 62028 62029 1 5 Same - - 186.5787763 437.998967177 0 9.569671e+02 51.7 1.369180 2.115168 0.7298717 592 DNA polymerase sliding clamp subunit (PCNA homolog) [DNA replication, recombination, and repair] L DNA polymerase III beta chain 1.515154 2.295768 0.8108244 593 ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] L chromosomal replication initiator protein DnaA L TRUE FALSE 7 TRUE 3.7528350 3.70944273 4.1881166 1.015497 0.8617829 Y 2.2813077 0.9929703 1.30 0.9285269 0.99245916 0.9541541 0.999415477 TRUE 0.5 0.999415477 TRUE 0.991015377 0.9929703 0.89463050 0.9879002 107806 66 62030 62031 1 13 Same + + 72.0933316 141.171790478 0 2.362590e+02 51.7 1.262069 2.269712 1.1094877 - - - 50S ribosomal protein L34 1.544592 2.383475 0.9069436 594 RNase P protein component [Translation, ribosomal structure and biogenesis] J ribonuclease P protein component FALSE FALSE 7 TRUE 2.8636376 2.17576869 2.1993764 1.015497 0.8617829 U 0.3764776 0.9376033 1.87 0.9140371 0.92911341 0.9445495 0.992875780 TRUE 0.5 0.992875780 TRUE 0.974582108 0.9376033 0.78289196 0.8967524 107806 66 62031 62032 1 139 Same + + 41.5893722 125.466548005 0 2.114746e+02 51.7 1.544592 2.383475 0.9069436 594 RNase P protein component [Translation, ribosomal structure and biogenesis] J ribonuclease P protein component 1.412283 2.170670 0.7614171 706 Preprotein translocase subunit YidC [Intracellular trafficking and secretion] U 60 kD inner-membrane protein - FALSE FALSE 8 TRUE 2.4457816 2.03676324 2.0313627 1.015497 0.8617829 N 0.7691331 0.9253495 6.97 0.1838980 0.91406928 0.2652423 0.705620279 TRUE 0.5 0.705620279 TRUE 0.414650778 0.9253495 0.75866718 0.8775240 107806 66 62032 369950 1 39 Same + + 82.0706365 180.850044155 0 4.189454e+02 51.7 1.412283 2.170670 0.7614171 706 Preprotein translocase subunit YidC [Intracellular trafficking and secretion] U 60 kD inner-membrane protein 1.440653 2.269581 0.8060301 486 Predicted GTPase [General function prediction only] R thiophene and furan oxidation protein ThdF FALSE FALSE 9 TRUE 2.9737579 2.73696877 2.8694511 1.015497 0.8617829 U 0.3764776 0.9650415 3.66 0.5921020 0.96141412 0.6992908 0.973095287 TRUE 0.5 0.973095287 TRUE 0.882317547 0.9650415 0.83779334 0.9410244 107806 66 62034 62035 1 49 Same + + 322.3268859 581.854517253 0 1.569450e+03 9.0 1.375387 2.322774 0.8961737 234 Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones] O 10 kD chaperonin 1.282523 2.166048 0.7264643 459 Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] O 60 kD chaperonin O FALSE FALSE 10 TRUE 4.1946416 4.44906780 5.0322892 1.015497 1.9481131 Y 2.2813077 0.9978065 4.22 0.4681836 0.99765838 0.5851190 0.997340969 TRUE 0.5 0.997340969 TRUE 0.892989885 0.9978065 0.90457199 0.9962111 107806 66 62035 62036 1 624 Same + + 0.0000000 -43.556233928 0 -5.735073e+01 51.7 1.282523 2.166048 0.7264643 459 Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] O 60 kD chaperonin 1.387577 2.189693 0.8046121 231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis] J elongation factor P - FALSE FALSE 11 TRUE 0.3916026 0.29656520 0.6480144 1.015497 0.8617829 N 0.7691331 0.5961992 8.70 0.1968337 0.27856451 0.2819232 0.086448081 FALSE 0.5 0.086448081 FALSE 0.047472754 0.5961992 0.16899596 0.4604548 107806 66 62037 62038 1 0 Same - - 0.0000000 35.044467320 0 3.504447e+01 NA 1.402739 2.201349 0.8025505 1484 DNA replication protein [DNA replication, recombination, and repair] L DNA replication protein DnaC 1.436233 2.180695 0.8166889 - - - primosomal protein I TRUE FALSE 11 TRUE 0.3916026 1.11860872 1.3296137 1.015497 0.5877867 U 0.3764776 0.7264679 0.79 0.9292673 0.59893602 0.9546420 0.951502135 TRUE 0.5 0.951502135 TRUE 0.893270134 0.7264679 0.38914672 0.6055417 107806 66 62038 62039 1 97 Same - - 0.0000000 -9.217425091 0 -9.217425e+00 NA 1.436233 2.180695 0.8166889 - - - primosomal protein I 1.421934 2.132902 0.7880286 742 N6-adenine-specific methylase [DNA replication, recombination, and repair] L hypothetical protein TRUE FALSE 10 TRUE 0.3916026 0.23147580 0.2483623 1.015497 0.5877867 U 0.3764776 0.5144347 5.90 0.2353524 0.02536026 0.3302466 0.007945158 FALSE 0.5 0.007945158 FALSE 0.012235667 0.5144347 0.03868843 0.3797968 107806 66 62040 62041 1 163 Same + + 19.5717852 -6.048706854 0 1.297030e+00 51.7 1.306884 1.978379 0.6828763 552 Signal recognition particle GTPase [Intracellular trafficking and secretion] U cell division protein FtsY 1.467895 2.332163 0.8070592 568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] K RNA polymerase sigma-32 factor - FALSE FALSE 10 TRUE 1.5967714 0.93914036 0.2693338 1.015497 0.8617829 N 0.7691331 0.7267854 7.42 0.1819999 0.59957656 0.2627750 0.249898189 FALSE 0.5 0.249898189 FALSE 0.124399024 0.7267854 0.38970326 0.6059234 107806 66 369951 62043 1 70 Same - - 90.6059523 221.554531584 0 4.572444e+02 51.7 1.386938 2.185161 0.7642917 449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane] M D-fructose-6-phosphate amidotransferase 1.335607 2.080810 0.7393699 1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] M UDP-N-acetylglucosamine pyrophosphorylase M TRUE FALSE 10 TRUE 3.0822029 2.84693460 3.2090033 1.015497 0.8617829 Y 2.2813077 0.9799456 4.97 0.3558662 0.97820137 0.4695153 0.961228143 TRUE 0.5 0.961228143 TRUE 0.784158018 0.9799456 0.86800294 0.9658050 107806 66 62044 62045 1 39 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA 1.377762 2.031803 0.7275587 561 Predicted hydrolases of the HAD superfamily [General function prediction only] R hypothetical protein 1.542852 2.281942 0.9006111 - - - Cof protein FALSE FALSE 10 TRUE 0.3916026 0.54630426 0.5829441 1.015497 0.5877867 U 0.3764776 0.5904595 3.66 0.5921020 0.26119724 0.6992908 0.339148000 FALSE 0.5 0.339148000 FALSE 0.216172163 0.5904595 0.15965784 0.4545508 107806 66 62045 62046 1 971 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA 1.542852 2.281942 0.9006111 - - - Cof protein 1.351141 2.099545 0.7283678 620 Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] E 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase FALSE FALSE 11 TRUE 0.3916026 0.54630426 0.5829441 1.015497 0.5877867 U 0.3764776 0.5904595 8.78 0.1987943 0.26119724 0.2844313 0.080645966 FALSE 0.5 0.080645966 FALSE 0.045018285 0.5904595 0.15965784 0.4545508 107806 66 62047 62048 1 141 Same - - 3.3499041 -33.970902295 0 -4.314086e+01 51.7 1.380670 2.133920 0.7411315 138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism] F phosphoribosylaminoimidazolecarboxamide formyltransferase 1.300883 2.138366 0.8752396 776 Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair] L DNA-binding protein hu-alpha - TRUE FALSE 11 TRUE 0.5289186 0.24512228 0.4281279 1.015497 0.8617829 N 0.7691331 0.5789560 7.04 0.1837312 0.22535325 0.2650257 0.061456013 FALSE 0.5 0.061456013 FALSE 0.035638990 0.5789560 0.14103073 0.4428321 107806 66 62048 62049 1 735 Same - - 5.9460022 -42.248276400 0 -3.907348e+01 27.0 1.300883 2.138366 0.8752396 776 Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair] L DNA-binding protein hu-alpha 1.363551 2.233352 0.7834044 86 DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription] K DNA-directed RNA polymerase beta' chain - TRUE FALSE 10 TRUE 0.8175754 0.19774757 0.6281044 1.015497 1.3758912 N 0.7691331 0.6428788 8.72 0.1973089 0.40829071 0.2825317 0.145016404 FALSE 0.5 0.145016404 FALSE 0.074261342 0.6428788 0.24604800 0.5099276 107806 66 62049 62050 1 78 Same - - 189.2160473 453.034909245 0 1.065650e+03 2.0 1.363551 2.233352 0.7834044 86 DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription] K DNA-directed RNA polymerase beta' chain 1.402199 2.229879 0.7840320 85 DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription] K DNA-directed RNA polymerase beta chain K TRUE FALSE 9 TRUE 3.7950097 3.89372003 4.3553610 1.015497 2.8627840 Y 2.2813077 0.9965920 5.30 0.3082349 0.99635749 0.4165085 0.991862069 TRUE 0.5 0.991862069 TRUE 0.804094588 0.9965920 0.90207267 0.9941186 107806 66 62050 62051 1 221 Same - - 186.5929512 333.825852927 0 1.052470e+03 51.7 1.402199 2.229879 0.7840320 85 DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription] K DNA-directed RNA polymerase beta chain 1.547771 2.442328 0.8748130 222 Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis] J 50S ribosomal protein L7/L12 - TRUE FALSE 8 TRUE 3.7634625 3.84739560 3.7625873 1.015497 0.8617829 N 0.7691331 0.9900543 8.02 0.1847905 0.98929965 0.2664007 0.954457561 TRUE 0.5 0.954457561 TRUE 0.644008918 0.9900543 0.88865044 0.9829172 107806 66 62051 62052 1 67 Same - - 288.0297021 567.554462936 0 1.451793e+03 39.0 1.547771 2.442328 0.8748130 222 Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis] J 50S ribosomal protein L7/L12 1.538456 2.446863 0.9018885 244 Ribosomal protein L10 [Translation, ribosomal structure and biogenesis] J 50S ribosomal protein L10 J TRUE FALSE 7 TRUE 4.1445194 4.33557657 4.8752704 1.015497 1.0491452 Y 2.2813077 0.9967827 4.86 0.3699308 0.99656191 0.4846917 0.994158343 TRUE 0.5 0.994158343 TRUE 0.844540004 0.9967827 0.90246489 0.9944468 107806 66 62052 62053 1 266 Same - - 237.5571968 265.200883577 0 1.134369e+03 51.7 1.538456 2.446863 0.9018885 244 Ribosomal protein L10 [Translation, ribosomal structure and biogenesis] J 50S ribosomal protein L10 1.463614 2.335290 0.7806297 81 Ribosomal protein L1 [Translation, ribosomal structure and biogenesis] J 50S ribosomal protein L1 J TRUE FALSE 6 TRUE 4.0206399 4.01814889 3.5283906 1.015497 0.8617829 Y 2.2813077 0.9930896 8.20 0.1871479 0.99258797 0.2694551 0.968585301 TRUE 0.5 0.968585301 TRUE 0.662149277 0.9930896 0.89487528 0.9881045 107806 66 62053 62054 1 3 Same - - 362.3316438 588.542360693 0 1.872218e+03 51.7 1.463614 2.335290 0.7806297 81 Ribosomal protein L1 [Translation, ribosomal structure and biogenesis] J 50S ribosomal protein L1 1.419944 2.306121 0.8776816 80 Ribosomal protein L11 [Translation, ribosomal structure and biogenesis] J 50S ribosomal protein L11 J TRUE FALSE 5 TRUE 4.3124732 4.76421327 5.1231490 1.015497 0.8617829 Y 2.2813077 0.9977099 1.07 0.9301657 0.99755506 0.9552337 0.999816025 TRUE 0.5 0.999816025 TRUE 0.992123992 0.9977099 0.90437320 0.9960446 107806 66 62054 62055 1 48 Same - - 291.1372297 493.040783652 0 1.433513e+03 51.7 1.419944 2.306121 0.8776816 80 Ribosomal protein L11 [Translation, ribosomal structure and biogenesis] J 50S ribosomal protein L11 1.511244 2.417771 0.8627020 250 Transcription antiterminator [Transcription] K transcription antitermination protein NusG - TRUE FALSE 4 TRUE 4.1529946 4.30339035 4.6118250 1.015497 0.8617829 N 0.7691331 0.9950018 4.15 0.4801119 0.99464933 0.5966839 0.994208601 TRUE 0.5 0.994208601 TRUE 0.891330087 0.9950018 0.89880296 0.9913842 107806 66 62055 62056 1 3 Same - - 33.2820480 133.037977238 0 2.545627e+02 51.7 1.511244 2.417771 0.8627020 250 Transcription antiterminator [Transcription] K transcription antitermination protein NusG 1.616466 2.486744 0.8782306 690 Preprotein translocase subunit SecE [Intracellular trafficking and secretion] U preprotein translocase SecE subunit - TRUE FALSE 3 TRUE 2.1829727 2.26504134 2.1377749 1.015497 0.8617829 N 0.7691331 0.9317932 1.07 0.9301657 0.92202953 0.9552337 0.993691225 TRUE 0.5 0.993691225 TRUE 0.978233510 0.9317932 0.77138333 0.8875944 107806 66 62056 2132577 1 314 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 1.616466 2.486744 0.8782306 690 Preprotein translocase subunit SecE [Intracellular trafficking and secretion] U preprotein translocase SecE subunit NA NA NA TRUE FALSE 2 TRUE 0.3916026 0.54630426 0.5829441 1.015497 0.5877867 U 0.3764776 0.5904595 8.34 0.1894766 0.26119724 0.2724647 0.076338372 FALSE 0.5 0.076338372 FALSE 0.042525670 0.5904595 0.15965784 0.4545508 107806 66 2132577 2132578 1 16 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA NA NA NA NA NA NA TRUE FALSE 1 TRUE 0.3916026 0.54630426 0.5829441 1.015497 0.5877867 U 0.3764776 0.5904595 2.13 0.9013884 0.26119724 0.9360764 0.763685470 TRUE 0.5 0.763685470 TRUE 0.634592850 0.5904595 0.15965784 0.4545508 107806 66 2132578 2132579 1 23 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA NA NA NA NA NA NA TRUE FALSE 0 TRUE 0.3916026 0.54630426 0.5829441 1.015497 0.5877867 U 0.3764776 0.5904595 2.68 0.8373139 0.26119724 0.8918364 0.645340799 TRUE 0.5 0.645340799 TRUE 0.494400303 0.5904595 0.15965784 0.4545508 107806 66 2132579 2132580 1 16 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA NA NA NA NA NA NA TRUE FALSE -1 TRUE 0.3916026 0.54630426 0.5829441 1.015497 0.5877867 U 0.3764776 0.5904595 2.13 0.9013884 0.26119724 0.9360764 0.763685470 TRUE 0.5 0.763685470 TRUE 0.634592850 0.5904595 0.15965784 0.4545508 107806 66 2132580 62057 1 139 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA NA NA NA 1.426776 2.154667 0.7494077 812 UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] M UDP-N-acetylenolpyruvoylglucosamine reductase TRUE FALSE -2 TRUE 0.3916026 0.54630426 0.5829441 1.015497 0.5877867 U 0.3764776 0.5904595 6.97 0.1838980 0.26119724 0.2652423 0.073787570 FALSE 0.5 0.073787570 FALSE 0.041054481 0.5904595 0.15965784 0.4545508 107806 66 62060 62061 1 21 Same + + 84.2099846 116.921536225 0 2.205208e+02 8.0 1.409559 2.194188 0.7592887 2 Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] E N-acetyl-gamma-glutamyl-phosphate reductase 1.373371 2.279160 0.7893118 548 Acetylglutamate kinase [Amino acid transport and metabolism] E acetylglutamate kinase E FALSE FALSE -2 TRUE 3.0146411 2.11234468 1.9565428 1.015497 2.2963730 Y 2.2813077 0.9667065 2.59 0.8517112 0.96331516 0.9019735 0.993413353 TRUE 0.5 0.993413353 TRUE 0.968167852 0.9667065 0.84115448 0.9437666 107806 66 62061 62062 1 30 Same + + 52.5357411 6.613193904 0 4.348842e+01 8.0 1.373371 2.279160 0.7893118 548 Acetylglutamate kinase [Amino acid transport and metabolism] E acetylglutamate kinase 1.436078 2.289032 0.8048256 137 Argininosuccinate synthase [Amino acid transport and metabolism] E argininosuccinate synthase E FALSE FALSE -1 TRUE 2.6375064 1.18024642 1.1386285 1.015497 2.2963730 Y 2.2813077 0.9176119 3.15 0.7320407 0.90436266 0.8140074 0.962733012 TRUE 0.5 0.962733012 TRUE 0.887857890 0.9176119 0.74346254 0.8655494 107806 66 62062 62063 1 72 Same + + 142.2874926 188.650160350 0 5.334387e+02 8.0 1.436078 2.289032 0.8048256 137 Argininosuccinate synthase [Amino acid transport and metabolism] E argininosuccinate synthase 1.496388 2.329581 0.8261368 165 Argininosuccinate lyase [Amino acid transport and metabolism] E argininosuccinate lyase E FALSE FALSE 0 TRUE 3.4431962 3.00111254 2.9570108 1.015497 2.2963730 Y 2.2813077 0.9876679 5.04 0.3462821 0.98670011 0.4590517 0.975185237 TRUE 0.5 0.975185237 TRUE 0.801094681 0.9876679 0.88376450 0.9788549 107806 66 62063 62064 1 82 Same + + 0.0000000 -19.427614097 0 -2.235031e+01 NA 1.496388 2.329581 0.8261368 165 Argininosuccinate lyase [Amino acid transport and metabolism] E argininosuccinate lyase 1.475292 2.214775 0.8187350 607 Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism] P hypothetical protein - FALSE FALSE 1 TRUE 0.3916026 0.07377851 0.1177786 1.015497 0.5877867 N 0.7691331 0.4973007 5.40 0.2942075 0.02536026 0.4004057 0.010730032 FALSE 0.5 0.010730032 FALSE 0.009158081 0.4973007 0.02169197 0.3637875 107806 66 62064 62065 1 107 Same + + 34.2828781 97.687409437 0 2.921126e+02 NA 1.475292 2.214775 0.8187350 607 Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism] P hypothetical protein 1.333288 1.983208 0.7240736 1952 Preprotein translocase subunit SecB [Intracellular trafficking and secretion] U protein-export protein SecB - FALSE FALSE 2 TRUE 2.2546916 2.45753132 1.7815546 1.015497 0.5877867 N 0.7691331 0.9271164 6.26 0.2047433 0.91626305 0.2920090 0.738022405 TRUE 0.5 0.738022405 TRUE 0.452045440 0.9271164 0.76214913 0.8802765 107806 66 62065 62066 1 102 Same + + 2.6532420 -27.646534284 0 -2.855606e+01 51.7 1.333288 1.983208 0.7240736 1952 Preprotein translocase subunit SecB [Intracellular trafficking and secretion] U protein-export protein SecB 1.497827 2.446905 0.8668087 1045 Serine acetyltransferase [Amino acid transport and metabolism] E serine acetyltransferase - FALSE FALSE 3 TRUE 0.4362427 0.08233798 0.2272616 1.015497 0.8617829 N 0.7691331 0.5304809 6.11 0.2146003 0.05723118 0.3044588 0.016316330 FALSE 0.5 0.016316330 FALSE 0.018282452 0.5304809 0.06380774 0.3950604 107806 66 62067 62068 1 168 Same - - 60.9860370 143.148511678 0 3.108582e+02 51.7 1.407195 2.179971 0.7590792 568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription] K RNA polymerase sigma factor RpoD 1.379879 2.062738 0.7107428 358 DNA primase (bacterial type) [DNA replication, recombination, and repair] L DNA primase - TRUE FALSE 3 TRUE 2.7522143 2.53596050 2.2615033 1.015497 0.8617829 N 0.7691331 0.9518696 7.50 0.1819276 0.94614035 0.2626809 0.796192903 TRUE 0.5 0.796192903 TRUE 0.488823982 0.9518696 0.81132309 0.9195575 107806 66 62068 62069 1 81 Same - - 33.8639851 55.708007186 0 1.868226e+02 51.7 1.379879 2.062738 0.7107428 358 DNA primase (bacterial type) [DNA replication, recombination, and repair] L DNA primase 1.589523 2.656336 0.9802237 828 Ribosomal protein S21 [Translation, ribosomal structure and biogenesis] J 30S ribosomal protein S21 - TRUE FALSE 2 TRUE 2.2189358 1.92481285 1.5332676 1.015497 0.8617829 N 0.7691331 0.9005064 5.36 0.2997125 0.88231253 0.4067527 0.762393434 TRUE 0.5 0.762393434 TRUE 0.511798924 0.9005064 0.71010040 0.8395250 107806 66 62071 62072 1 272 Same - - 0.0000000 -0.368667798 0 -2.285577e+00 51.7 1.550550 2.535303 0.8691677 108 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism] H 3,4-dihydroxy-2-butanone 4-phosphate synthase 1.455334 2.273780 0.8175619 2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane] M kinase - TRUE FALSE 1 TRUE 0.3916026 0.26793760 0.3200353 1.015497 0.8617829 N 0.7691331 0.5627735 8.22 0.1874567 0.17244920 0.2698546 0.045869965 FALSE 0.5 0.045869965 FALSE 0.029112710 0.5627735 0.11502459 0.4265993 107806 66 62074 62075 1 86 Same - - 0.0000000 -17.670713254 0 -1.893186e+01 25.0 1.474188 2.311873 0.8150939 1968 Uncharacterized bacitracin resistance protein [Defense mechanisms] V bacitracin resistance protein 1.348707 2.108300 0.7705713 2190 Phosphotransferase system IIA components [Carbohydrate transport and metabolism] G glucose-permease IIA component - TRUE FALSE 0 TRUE 0.3916026 0.11682849 0.1506158 1.015497 1.4556405 N 0.7691331 0.5654272 5.53 0.2776678 0.18133227 0.3811196 0.078463625 FALSE 0.5 0.078463625 FALSE 0.049482483 0.5654272 0.11927350 0.4292413 107806 66 62075 62076 1 50 Same - - 16.0596408 106.696639238 0 1.403941e+02 5.0 1.348707 2.108300 0.7705713 2190 Phosphotransferase system IIA components [Carbohydrate transport and metabolism] G glucose-permease IIA component 1.434513 2.237481 0.7798856 1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism] G phosphoenolpyruvate-protein phosphotransferase G TRUE FALSE -1 TRUE 1.3206105 1.75524568 1.8828070 1.015497 2.6514158 Y 2.2813077 0.9391656 4.27 0.4598578 0.93100326 0.5769697 0.919922040 TRUE 0.5 0.919922040 TRUE 0.757684547 0.9391656 0.78599348 0.8992276 107806 66 62076 62077 1 149 Same - - 105.7618185 219.498945365 0 6.243649e+02 5.0 1.434513 2.237481 0.7798856 1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism] G phosphoenolpyruvate-protein phosphotransferase 1.339621 2.105021 0.8944850 1925 Phosphotransferase system, HPr-related proteins [Carbohydrate transport and metabolism] G phosphocarrier protein HPr G TRUE FALSE -2 TRUE 3.2148366 3.18753663 3.1359831 1.015497 2.6514158 Y 2.2813077 0.9899406 7.16 0.1835394 0.98917612 0.2647765 0.953583334 TRUE 0.5 0.953583334 TRUE 0.641557067 0.9899406 0.88841756 0.9827234 107806 66 62077 62078 1 149 Same - - 0.0000000 -19.238410566 0 5.890205e+01 51.7 1.339621 2.105021 0.8944850 1925 Phosphotransferase system, HPr-related proteins [Carbohydrate transport and metabolism] G phosphocarrier protein HPr 1.391383 2.288613 0.8149081 31 Cysteine synthase [Amino acid transport and metabolism] E cysteine synthase A - TRUE FALSE -3 TRUE 0.3916026 1.33619981 0.1197745 1.015497 0.8617829 N 0.7691331 0.6916215 7.16 0.1835394 0.52506156 0.2647765 0.199053710 FALSE 0.5 0.199053710 FALSE 0.099146170 0.6916215 0.32867184 0.5645246 107806 66 2132581 2132582 1 29 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA NA NA NA NA NA NA TRUE FALSE -4 TRUE 0.3916026 0.54630426 0.5829441 1.015497 0.5877867 U 0.3764776 0.5904595 3.04 0.7637622 0.26119724 0.8381706 0.533365967 TRUE 0.5 0.533365967 TRUE 0.380516051 0.5904595 0.15965784 0.4545508 107806 66 62080 2132583 1 173 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA 1.436733 2.177419 0.7682578 8 Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] J glutamyl-tRNA synthetase NA NA NA TRUE TRUE -4 TRUE 0.3916026 0.54630426 0.5829441 1.015497 0.5877867 U 0.3764776 0.5904595 7.56 0.1820209 0.26119724 0.2628023 0.072933967 FALSE 0.5 0.072933967 FALSE 0.040562964 0.5904595 0.15965784 0.4545508 107806 66 62082 62083 1 -3 Same + + 149.7077086 178.862669453 0 5.639865e+02 10.0 1.361927 2.081773 0.7220302 1766 Flagellar biosynthesis/type III secretory pathway lipoprotein [Cell motility and secretion / Intracellular trafficking and secretion] NU flagellar M-ring protein 1.503723 2.246827 0.7692699 1536 Flagellar motor switch protein [Cell motility and secretion] N flagellar motor switch protein FliG N TRUE TRUE -3 TRUE 3.5038010 3.10094470 2.8175346 1.015497 1.7047883 Y 2.2813077 0.9858945 0.54 0.9256581 0.98476023 0.9522610 0.998758658 TRUE 0.5 0.998758658 TRUE 0.989180977 0.9858945 0.88013838 0.9758452 107806 66 62083 62084 1 -7 Same + + 18.8762946 7.411265031 0 2.848874e+01 6.0 1.503723 2.246827 0.7692699 1536 Flagellar motor switch protein [Cell motility and secretion] N flagellar motor switch protein FliG 1.467387 2.077224 0.7247276 1317 Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion] NU flagellar assembly protein FliH N TRUE TRUE -2 TRUE 1.5639289 1.07792483 1.1508266 1.015497 2.5864064 Y 2.2813077 0.8930555 0.31 0.9198057 0.87244377 0.9483861 0.987413341 TRUE 0.5 0.987413341 TRUE 0.963261426 0.8930555 0.69567517 0.8283778 107806 66 62084 62085 1 -42 Same + + 14.6866399 9.713850124 0 2.590853e+01 51.7 1.467387 2.077224 0.7247276 1317 Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion] NU flagellar assembly protein FliH 1.405092 2.293300 0.8198236 1157 Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion] NU flagellum-specific ATP synthase NU TRUE TRUE -1 TRUE 1.2334109 1.06781430 1.1629773 1.015497 0.8617829 Y 2.2813077 0.8256026 0.02 0.9081095 0.77499570 0.9405891 0.971460316 TRUE 0.5 0.971460316 TRUE 0.928525902 0.8256026 0.56795103 0.7323565 107806 66 62085 62086 1 30 Same + + 7.8334870 33.993392582 0 5.256431e+01 51.7 1.405092 2.293300 0.8198236 1157 Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion] NU flagellum-specific ATP synthase 1.524994 2.138829 0.7682621 2882 Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones] NUO flagellar FliJ protein NU TRUE TRUE 0 TRUE 0.9434117 1.28405771 1.3174833 1.015497 0.8617829 Y 2.2813077 0.8395214 3.15 0.7320407 0.79638619 0.8140074 0.914421709 TRUE 0.5 0.914421709 TRUE 0.799805065 0.8395214 0.59389128 0.7514771 107806 66 62086 62087 1 9 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA 1.524994 2.138829 0.7682621 2882 Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones] NUO flagellar FliJ protein 1.424345 1.989955 0.7790020 - - - hypothetical protein TRUE TRUE 1 TRUE 0.3916026 0.54630426 0.5829441 1.015497 0.5877867 U 0.3764776 0.5904595 1.49 0.9254647 0.26119724 0.9521333 0.814462080 TRUE 0.5 0.814462080 TRUE 0.702294407 0.5904595 0.15965784 0.4545508 107806 66 62087 62088 1 91 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA 1.424345 1.989955 0.7790020 - - - hypothetical protein 1.554858 2.195397 0.7629629 - - - flagellar hook-length control protein TRUE TRUE 2 TRUE 0.3916026 0.54630426 0.5829441 1.015497 0.5877867 U 0.3764776 0.5904595 5.66 0.2632805 0.26119724 0.3640738 0.112172217 FALSE 0.5 0.112172217 FALSE 0.063580104 0.5904595 0.15965784 0.4545508 107806 66 62088 62089 1 61 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA 1.554858 2.195397 0.7629629 - - - flagellar hook-length control protein 1.461412 2.102715 0.7133908 1868 Flagellar motor switch protein [Cell motility and secretion] N flagellar motor switch protein FliM TRUE TRUE 3 TRUE 0.3916026 0.54630426 0.5829441 1.015497 0.5877867 U 0.3764776 0.5904595 4.63 0.3999642 0.26119724 0.5164059 0.190715248 FALSE 0.5 0.190715248 FALSE 0.112406679 0.5904595 0.15965784 0.4545508 107806 66 62089 62090 1 -7 Same + + 0.0000000 45.954634032 0 4.595463e+01 NA 1.461412 2.102715 0.7133908 1868 Flagellar motor switch protein [Cell motility and secretion] N flagellar motor switch protein FliM 1.323877 2.029426 0.7943187 1886 Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion] NU flagellar motor switch protein FliN N TRUE TRUE 4 TRUE 0.3916026 1.21128030 1.4292527 1.015497 0.5877867 Y 2.2813077 0.8050456 0.31 0.9198057 0.74205069 0.9483861 0.970584161 TRUE 0.5 0.970584161 TRUE 0.928239267 0.8050456 0.53002426 0.7047390 107806 66 62090 62091 1 12 Same + + 0.0000000 0.009487590 0 9.487590e-03 NA 1.323877 2.029426 0.7943187 1886 Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion] NU flagellar motor switch protein FliN 1.507038 2.406183 0.8536821 1338 Flagellar biosynthesis pathway, component FliP [Cell motility and secretion / Intracellular trafficking and secretion] NU flagellar biosynthetic protein FliP NU TRUE TRUE 5 TRUE 0.3916026 0.86780751 1.0461363 1.015497 0.5877867 Y 2.2813077 0.7456128 1.78 0.9173300 0.63658425 0.9467417 0.951069200 TRUE 0.5 0.951069200 TRUE 0.890481959 0.7456128 0.42288606 0.6288260 107806 66 62091 62092 1 72 Same + + 0.0000000 0.009487590 0 9.487590e-03 7.0 1.507038 2.406183 0.8536821 1338 Flagellar biosynthesis pathway, component FliP [Cell motility and secretion / Intracellular trafficking and secretion] NU flagellar biosynthetic protein FliP 1.459115 2.426611 1.0163446 1987 Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion] NU flagellar biosynthetic protein FliQ NU TRUE TRUE 6 TRUE 0.3916026 0.86780751 1.0461363 1.015497 2.4978456 Y 2.2813077 0.8314773 5.04 0.3462821 0.78411135 0.4590517 0.657993692 TRUE 0.5 0.657993692 TRUE 0.421341161 0.8314773 0.57887379 0.7403845 107806 66 62092 62093 1 0 Same + + 141.8653183 359.528851976 0 7.317647e+02 7.0 1.459115 2.426611 1.0163446 1987 Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion] NU flagellar biosynthetic protein FliQ 1.454109 2.318794 0.8044992 1684 Flagellar biosynthesis pathway, component FliR [Cell motility and secretion / Intracellular trafficking and secretion] NU flagellar biosynthetic protein FliR NU TRUE TRUE 7 TRUE 3.4309153 3.43773413 3.9224531 1.015497 2.4978456 Y 2.2813077 0.9936052 0.79 0.9292673 0.99314456 0.9546420 0.999474861 TRUE 0.5 0.999474861 TRUE 0.991236243 0.9936052 0.89593386 0.9889879 107806 66 62094 62095 1 11 Same - - 58.7114334 181.418947967 0 5.496745e+02 39.0 1.328063 2.019585 0.9079930 267 Ribosomal protein L33 [Translation, ribosomal structure and biogenesis] J 50S ribosomal protein L33 1.464619 2.289382 0.9424936 227 Ribosomal protein L28 [Translation, ribosomal structure and biogenesis] J 50S ribosomal protein L28 J FALSE TRUE 7 TRUE 2.7382133 3.01529406 2.8868599 1.015497 1.0491452 Y 2.2813077 0.9785688 1.67 0.9208876 0.97667206 0.9491038 0.997952258 TRUE 0.5 0.997952258 TRUE 0.986792085 0.9785688 0.86520068 0.9634936 107806 66 2132584 62099 1 80 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA NA NA NA 1.373442 2.091815 0.7449365 313 Predicted methyltransferases [General function prediction only] R hypothetical protein FALSE TRUE 6 TRUE 0.3916026 0.54630426 0.5829441 1.015497 0.5877867 U 0.3764776 0.5904595 5.32 0.3053638 0.26119724 0.4132313 0.134512073 FALSE 0.5 0.134512073 FALSE 0.077082725 0.5904595 0.15965784 0.4545508 107806 66 62100 62101 1 240 Same + + 0.0000000 -25.029357907 0 -2.246225e+01 51.7 1.391350 2.312156 0.8222521 304 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] IQ 3-oxoacyl-[acyl-carrier-protein] synthase I 1.487695 2.340568 0.8221415 176 Transaldolase [Carbohydrate transport and metabolism] G transaldolase A - TRUE TRUE 6 TRUE 0.3916026 0.07164346 0.1514128 1.015497 0.8617829 N 0.7691331 0.5187404 8.12 0.1860021 0.02536026 0.2679716 0.005910574 FALSE 0.5 0.005910574 FALSE 0.010752491 0.5187404 0.04540749 0.3838666 107806 66 62101 62102 1 55 Same + + 2.1690537 9.879793943 0 7.245223e+00 51.7 1.487695 2.340568 0.8221415 176 Transaldolase [Carbohydrate transport and metabolism] G transaldolase A 1.356709 2.190667 0.7646923 21 Transketolase [Carbohydrate transport and metabolism] G transketolase G TRUE TRUE 7 TRUE 0.3657449 0.97812396 1.1750756 1.015497 0.8617829 Y 2.2813077 0.7781320 4.38 0.4415693 0.69628719 0.5588425 0.644484971 TRUE 0.5 0.644484971 TRUE 0.422961970 0.7781320 0.48105152 0.6696602 107806 66 62102 62103 1 105 Same + + 0.6931472 -19.313274477 0 -2.676920e+01 51.7 1.356709 2.190667 0.7646923 21 Transketolase [Carbohydrate transport and metabolism] G transketolase 1.312978 2.126382 0.7499228 624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism] E succinyl-diaminopimelate desuccinylase - TRUE TRUE 8 TRUE 0.3124909 0.06534132 0.1187495 1.015497 0.8617829 N 0.7691331 0.5090884 6.19 0.2088387 0.02536026 0.2971976 0.006821544 FALSE 0.5 0.006821544 FALSE 0.008199166 0.5090884 0.03036733 0.3747699 107806 66 62104 62105 1 576 Same - - 0.0000000 -36.730857994 0 -4.195097e+01 51.7 1.428055 2.338408 0.8061138 329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] EM dihydrodipicolinate synthase 1.533506 2.535836 0.8966729 82 Chorismate synthase [Amino acid transport and metabolism] E chorismate synthase E FALSE TRUE 8 TRUE 0.3916026 0.23429177 0.5412897 1.015497 0.8617829 Y 2.2813077 0.6437943 8.66 0.1959104 0.41064706 0.2807404 0.145126905 FALSE 0.5 0.145126905 FALSE 0.074218978 0.6437943 0.24757933 0.5109247 107806 66 62106 62107 1 325 Same + + 0.0000000 -28.170703387 0 -1.783514e+01 NA 1.315394 1.960841 0.7027016 2840 Uncharacterized protein conserved in bacteria [Function unknown] S hypothetical protein 1.395654 2.257049 0.8133829 40 ATP phosphoribosyltransferase [Amino acid transport and metabolism] E ATP phosphoribosyltransferase TRUE TRUE 8 TRUE 0.3916026 0.13642104 0.2439163 1.015497 0.5877867 U 0.3764776 0.5000432 8.38 0.1902072 0.02536026 0.2734074 0.006074583 FALSE 0.5 0.006074583 FALSE 0.005181084 0.5000432 0.02169197 0.3663303 107806 66 62107 62108 1 9 Same + + 82.6992874 148.477858638 0 3.491648e+02 8.0 1.395654 2.257049 0.8133829 40 ATP phosphoribosyltransferase [Amino acid transport and metabolism] E ATP phosphoribosyltransferase 1.445183 2.308595 0.8078249 141 Histidinol dehydrogenase [Amino acid transport and metabolism] E histidinol-dehydrogenase E TRUE TRUE 9 TRUE 2.9874128 2.60219239 2.3084178 1.015497 2.2963730 Y 2.2813077 0.9776453 1.49 0.9254647 0.97564385 0.9521333 0.997993464 TRUE 0.5 0.997993464 TRUE 0.987410056 0.9776453 0.86332239 0.9619458 107806 66 62108 62109 1 -3 Same + + 135.6368580 161.951656795 0 5.310450e+02 8.0 1.445183 2.308595 0.8078249 141 Histidinol dehydrogenase [Amino acid transport and metabolism] E histidinol-dehydrogenase 1.379805 2.145537 0.7525796 79 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] E histidinol-phosphate aminotransferase E TRUE TRUE 10 TRUE 3.4061994 2.98695812 2.4995912 1.015497 2.2963730 Y 2.2813077 0.9851705 0.54 0.9256581 0.98396617 0.9522610 0.998693011 TRUE 0.5 0.998693011 TRUE 0.989030668 0.9851705 0.87865897 0.9746186 107806 66 62109 62110 1 -10 Same + + 26.7927708 129.659283083 0 2.408204e+02 8.0 1.379805 2.145537 0.7525796 79 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] E histidinol-phosphate aminotransferase 1.543069 2.338398 0.8286130 131 Imidazoleglycerol-phosphate dehydratase [Amino acid transport and metabolism] E imidazoleglycerol-phosphate dehydratase E TRUE TRUE 11 TRUE 1.9470397 2.20122703 2.0767406 1.015497 2.2963730 Y 2.2813077 0.9591200 0.22 0.9167557 0.95459961 0.9463597 0.995700007 TRUE 0.5 0.995700007 TRUE 0.981213963 0.9591200 0.82586715 0.9313242 107806 66 62110 62111 1 0 Same + + 22.8428731 130.776763856 0 2.554103e+02 8.0 1.543069 2.338398 0.8286130 131 Imidazoleglycerol-phosphate dehydratase [Amino acid transport and metabolism] E imidazoleglycerol-phosphate dehydratase 1.402070 2.233616 0.8296149 118 Glutamine amidotransferase [Amino acid transport and metabolism] E amidotransferase hisH E TRUE TRUE 12 TRUE 1.7856218 2.29061844 2.1071842 1.015497 2.2963730 Y 2.2813077 0.9597807 0.79 0.9292673 0.95536405 0.9546420 0.996456326 TRUE 0.5 0.996456326 TRUE 0.984347819 0.9597807 0.82719558 0.9324024 107806 66 62111 62112 1 5 Same + + 224.3250671 466.011300756 0 1.238453e+03 8.0 1.402070 2.233616 0.8296149 118 Glutamine amidotransferase [Amino acid transport and metabolism] E amidotransferase hisH 1.455242 2.295553 0.8014364 106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] E phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase E TRUE TRUE 13 TRUE 3.9927986 4.15980505 4.4188387 1.015497 2.2963730 Y 2.2813077 0.9968621 1.30 0.9285269 0.99664707 0.9541541 0.999741108 TRUE 0.5 0.999741108 TRUE 0.991764680 0.9968621 0.90262834 0.9945836 107806 66 62112 62113 1 -21 Same + + 191.7826986 500.838977555 0 1.139282e+03 8.0 1.455242 2.295553 0.8014364 106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] E phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 1.367870 2.198315 0.7970787 107 Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] E HisF protein E TRUE TRUE 14 TRUE 3.8362973 4.03379827 4.6552397 1.015497 2.2963730 Y 2.2813077 0.9967579 0.14 0.9136281 0.99653532 0.9442768 0.999671428 TRUE 0.5 0.999671428 TRUE 0.989880285 0.9967579 0.90241386 0.9944041 107806 66 62113 62114 1 -6 Same + + 91.8203201 221.082084907 0 4.703012e+02 8.0 1.367870 2.198315 0.7970787 107 Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] E HisF protein 1.431836 2.156130 0.7577505 139 Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism] E phosphoribosyl-AMP cyclohydrolase E TRUE TRUE 15 TRUE 3.0956223 2.86081049 3.1723913 1.015497 2.2963730 Y 2.2813077 0.9863304 0.39 0.9221387 0.98523766 0.9499329 0.998736456 TRUE 0.5 0.998736456 TRUE 0.988726688 0.9863304 0.88102923 0.9765842 107806 66 62114 62115 1 359 Same + + 0.0000000 -6.228224637 0 -6.980953e-01 51.7 1.431836 2.156130 0.7577505 139 Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism] E phosphoribosyl-AMP cyclohydrolase 1.448411 2.271090 0.7706460 362 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] G 6-phosphogluconate dehydrogenase - TRUE TRUE 16 TRUE 0.3916026 0.30148871 0.2662605 1.015497 0.8617829 N 0.7691331 0.5627763 8.54 0.1933288 0.17245881 0.2774266 0.047569544 FALSE 0.5 0.047569544 FALSE 0.030210400 0.5627763 0.11502916 0.4266022 107806 66 62115 62116 1 163 Same + + 0.0000000 -26.391214941 0 -2.326561e+01 51.7 1.448411 2.271090 0.7706460 362 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] G 6-phosphogluconate dehydrogenase 1.416712 2.250460 0.8070755 717 Deoxycytidine deaminase [Nucleotide transport and metabolism] F deoxycytidine triphosphate deaminase - TRUE TRUE 17 TRUE 0.3916026 0.06417304 0.1860805 1.015497 0.8617829 N 0.7691331 0.5208188 7.42 0.1819999 0.02536026 0.2627750 0.005755993 FALSE 0.5 0.005755993 FALSE 0.011251399 0.5208188 0.04865644 0.3858379 107806 66 62116 62117 1 148 Same + + 4.8697298 -23.115994405 0 -3.332612e+01 51.7 1.416712 2.250460 0.8070755 717 Deoxycytidine deaminase [Nucleotide transport and metabolism] F deoxycytidine triphosphate deaminase 1.339081 2.017952 0.6827723 143 Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] J methionyl-tRNA synthetase - TRUE TRUE 18 TRUE 0.6809192 0.12741179 0.1180958 1.015497 0.8617829 N 0.7691331 0.5447529 7.11 0.1836391 0.10983723 0.2649062 0.027006795 FALSE 0.5 0.027006795 FALSE 0.020813124 0.5447529 0.08633294 0.4088616 107806 66 62118 2132585 1 29 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 1.530680 2.270678 0.7815646 37 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Cell division and chromosome partitioning] D cell cycle protein MesJ NA NA NA FALSE TRUE 18 TRUE 0.3916026 0.54630426 0.5829441 1.015497 0.5877867 U 0.3764776 0.5904595 3.04 0.7637622 0.26119724 0.8381706 0.533365967 TRUE 0.5 0.533365967 TRUE 0.380516051 0.5904595 0.15965784 0.4545508 107806 66 62119 62120 1 37 Same + + 0.0000000 -21.507221895 0 -2.479581e+01 51.7 1.452361 2.235086 0.8276214 307 Riboflavin synthase alpha chain [Coenzyme metabolism] H riboflavin synthase alpha chain 1.487468 2.460240 0.8773629 4657 Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion] C hypothetical protein - TRUE TRUE 18 TRUE 0.3916026 0.05928656 0.1089537 1.015497 0.8617829 N 0.7691331 0.5130320 3.47 0.6452511 0.02536026 0.7445000 0.045189186 FALSE 0.5 0.045189186 FALSE 0.064467965 0.5130320 0.03650296 0.3784751 107806 66 62120 62121 1 3 Same + + 31.0511986 175.427581846 0 2.277607e+02 27.0 1.487468 2.460240 0.8773629 4657 Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion] C hypothetical protein 1.389604 2.172739 0.8300319 2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion] C ferredoxin II C TRUE TRUE 19 TRUE 2.0924318 2.12500108 2.7320427 1.015497 1.3758912 Y 2.2813077 0.9586007 1.07 0.9301657 0.95399797 0.9552337 0.996392815 TRUE 0.5 0.996392815 TRUE 0.984305283 0.9586007 0.82482329 0.9304774 107806 66 62121 62122 1 163 Same + + 17.9802127 21.187989695 0 4.609837e+01 9.0 1.389604 2.172739 0.8300319 2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion] C ferredoxin II 1.482500 2.251091 0.7746907 4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion] C membrane protein C TRUE TRUE 20 TRUE 1.5316503 1.22164991 1.2462842 1.015497 1.9481131 Y 2.2813077 0.8868116 7.42 0.1819999 0.86404585 0.2627750 0.585756856 TRUE 0.5 0.585756856 TRUE 0.324684871 0.8868116 0.68363598 0.8191224 107806 66 62122 369949 1 48 Same + + 87.1288325 29.072713200 0 1.497784e+02 27.0 1.482500 2.251091 0.7746907 4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion] C membrane protein 1.343130 2.146790 0.7613868 4658 Predicted NADH:ubiquinone oxidoreductase, subunit RnfD [Energy production and conversion] C hypothetical protein C TRUE TRUE 21 TRUE 3.0687516 1.77906431 1.2697112 1.015497 1.3758912 Y 2.2813077 0.9361354 4.15 0.4801119 0.92733195 0.5966839 0.921782456 TRUE 0.5 0.921782456 TRUE 0.766017376 0.9361354 0.77998045 0.8944316 107806 66 369949 62124 1 149 Same + + 0.0000000 0.000000000 0 0.000000e+00 27.0 1.343130 2.146790 0.7613868 4658 Predicted NADH:ubiquinone oxidoreductase, subunit RnfD [Energy production and conversion] C hypothetical protein 1.324593 2.058126 0.7737050 4659 Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Energy production and conversion] C nitrogen fixation protein C TRUE TRUE 22 TRUE 0.3916026 0.54630426 0.5829441 1.015497 1.3758912 Y 2.2813077 0.7172752 7.16 0.1835394 0.58014445 0.2647765 0.237002673 FALSE 0.5 0.237002673 FALSE 0.117991452 0.7172752 0.37307673 0.5945531 107806 66 62124 62125 1 -25 Same + + 0.0000000 0.000000000 0 0.000000e+00 6.0 1.324593 2.058126 0.7737050 4659 Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Energy production and conversion] C nitrogen fixation protein 1.374716 2.243926 0.8226627 4660 Predicted NADH:ubiquinone oxidoreductase, subunit RnfE [Energy production and conversion] C hypothetical protein C TRUE TRUE 23 TRUE 0.3916026 0.54630426 0.5829441 1.015497 2.5864064 Y 2.2813077 0.7792046 0.11 0.9123457 0.69817142 0.9434213 0.960121569 TRUE 0.5 0.960121569 TRUE 0.906746972 0.7792046 0.48298858 0.6710354 107806 66 62125 62126 1 11 Same + + 17.7206889 151.536295431 0 1.890197e+02 51.7 1.374716 2.243926 0.8226627 4660 Predicted NADH:ubiquinone oxidoreductase, subunit RnfE [Energy production and conversion] C hypothetical protein 1.444114 2.219760 0.7984315 177 Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] L endonuclease III - TRUE TRUE 24 TRUE 1.5157355 1.94952014 2.3872183 1.015497 0.8617829 N 0.7691331 0.9110814 1.67 0.9208876 0.89604218 0.9491038 0.990131315 TRUE 0.5 0.990131315 TRUE 0.969307705 0.9110814 0.73068520 0.8555419 107806 66 62126 369942 1 23 Same + + 0.0000000 -20.871701211 0 -2.748008e+01 51.7 1.444114 2.219760 0.7984315 177 Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] L endonuclease III 1.399424 2.075044 0.7143327 1198 Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] L primosomal protein N' L TRUE TRUE 25 TRUE 0.3916026 0.06838054 0.1084918 1.015497 0.8617829 Y 2.2813077 0.5830645 2.68 0.8373139 0.23831727 0.8918364 0.616909030 TRUE 0.5 0.616909030 TRUE 0.471376833 0.5830645 0.14766992 0.4470001 107806 66 369942 62128 1 160 Same + + 0.0000000 -19.457317751 0 -2.512625e+01 51.7 1.399424 2.075044 0.7143327 1198 Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] L primosomal protein N' 1.416395 2.158872 0.7629833 162 Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] J tyrosyl-tRNA synthetase - TRUE TRUE 26 TRUE 0.3916026 0.06041234 0.1168608 1.015497 0.8617829 N 0.7691331 0.5139225 7.35 0.1822921 0.02536026 0.2631551 0.005767230 FALSE 0.5 0.005767230 FALSE 0.008703159 0.5139225 0.03789031 0.3793141 107806 66 62130 62131 1 352 Same + + 0.0000000 -35.398172589 0 -2.749279e+01 NA 1.448408 2.421124 0.8767194 628 Predicted permease [General function prediction only] R hypothetical protein 1.478361 2.437384 0.8558826 722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] E phospho-2-dehydro-3-deoxyheptonate aldolase TRUE TRUE 27 TRUE 0.3916026 0.06923399 0.4796359 1.015497 0.5877867 U 0.3764776 0.5117832 8.52 0.1929217 0.02536026 0.2769032 0.006181332 FALSE 0.5 0.006181332 FALSE 0.008483911 0.5117832 0.03455866 0.3773001 107806 66 62131 62132 1 152 Same + + 0.0000000 -23.969504045 0 -3.146509e+01 51.7 1.478361 2.437384 0.8558826 722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] E phospho-2-dehydro-3-deoxyheptonate aldolase 1.433572 2.143960 0.7487424 441 Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] J threonyl-tRNA synthetase - TRUE TRUE 28 TRUE 0.3916026 0.11322525 0.1285168 1.015497 0.8617829 N 0.7691331 0.5227514 7.23 0.1832405 0.02754127 0.2643882 0.006313777 FALSE 0.5 0.006313777 FALSE 0.012078775 0.5227514 0.05168065 0.3876748 107806 66 62132 62133 1 4 Same + + 187.4164518 186.986063053 0 6.924420e+02 51.7 1.433572 2.143960 0.7487424 441 Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] J threonyl-tRNA synthetase 1.490046 2.334371 0.8339338 290 Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis] J translation initiation factor IF-3 J TRUE TRUE 29 TRUE 3.7740340 3.39307938 2.9393958 1.015497 0.8617829 Y 2.2813077 0.9867730 1.19 0.9295750 0.98572208 0.9548447 0.998903833 TRUE 0.5 0.998903833 TRUE 0.989959671 0.9867730 0.88193418 0.9773352 107806 66 62133 62134 1 87 Same + + 208.8020184 354.613076305 0 1.047496e+03 51.7 1.490046 2.334371 0.8339338 290 Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis] J translation initiation factor IF-3 1.271303 2.068299 0.9284312 291 Ribosomal protein L35 [Translation, ribosomal structure and biogenesis] J 50S ribosomal protein L35 J TRUE TRUE 30 TRUE 3.9162555 3.81660974 3.8621872 1.015497 0.8617829 Y 2.2813077 0.9929061 5.57 0.2730915 0.99238980 0.3757253 0.979996318 TRUE 0.5 0.979996318 TRUE 0.761068590 0.9929061 0.89449873 0.9877903 107806 66 62134 62135 1 43 Same + + 323.5924301 622.155112754 0 1.753881e+03 39.0 1.271303 2.068299 0.9284312 291 Ribosomal protein L35 [Translation, ribosomal structure and biogenesis] J 50S ribosomal protein L35 1.381190 2.273150 0.8848357 292 Ribosomal protein L20 [Translation, ribosomal structure and biogenesis] J 50S ribosomal protein L20 J TRUE TRUE 31 TRUE 4.2028264 4.64684064 5.3773731 1.015497 1.0491452 Y 2.2813077 0.9978072 3.89 0.5315514 0.99765916 0.6451150 0.997936478 TRUE 0.5 0.997936478 TRUE 0.914938371 0.9978072 0.90457348 0.9962124 107806 66 62135 62136 1 195 Same + + 176.6869028 235.749312794 0 7.320894e+02 51.7 1.381190 2.273150 0.8848357 292 Ribosomal protein L20 [Translation, ribosomal structure and biogenesis] J 50S ribosomal protein L20 1.386745 2.076891 0.7170852 16 Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] J phenylalanyl-tRNA synthetase alpha chain J TRUE TRUE 32 TRUE 3.6768561 3.45266524 3.3200593 1.015497 0.8617829 Y 2.2813077 0.9885561 7.88 0.1835642 0.98766910 0.2648088 0.947392547 TRUE 0.5 0.947392547 TRUE 0.635064131 0.9885561 0.88558216 0.9803652 107806 66 62136 62137 1 10 Same + + 273.9256470 483.850642207 0 1.480648e+03 2.0 1.386745 2.076891 0.7170852 16 Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] J phenylalanyl-tRNA synthetase alpha chain 1.366378 2.067222 0.6960353 72 Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] J phenylalanyl-tRNA synthetase beta chain J TRUE TRUE 33 TRUE 4.1274216 4.35170899 4.5470661 1.015497 2.8627840 Y 2.2813077 0.9977944 1.58 0.9233987 0.99764547 0.9507672 0.999804255 TRUE 0.5 0.999804255 TRUE 0.991322005 0.9977944 0.90454714 0.9961903 107806 66 62137 62138 1 5 Same + + 63.8133544 179.589335515 0 4.194958e+02 51.7 1.366378 2.067222 0.6960353 72 Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] J phenylalanyl-tRNA synthetase beta chain 1.474791 2.206916 0.8440345 776 Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair] L integration host factor alpha-subunit - TRUE TRUE 34 TRUE 2.7662007 2.75061199 2.8347884 1.015497 0.8617829 N 0.7691331 0.9652875 1.30 0.9285269 0.96169542 0.9541541 0.996943447 TRUE 0.5 0.996943447 TRUE 0.985368453 0.9652875 0.83828976 0.9414291 107806 66 62138 62139 1 42 Same + + 0.0000000 -19.791564208 0 -2.487799e+01 51.7 1.474791 2.206916 0.8440345 776 Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair] L integration host factor alpha-subunit 1.385958 2.166865 0.7519381 809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis] J S-adenosylmethionine:tRNA ribosyltransferase-isomerase - TRUE TRUE 35 TRUE 0.3916026 0.05953088 0.1113341 1.015497 0.8617829 N 0.7691331 0.5132862 3.82 0.5485806 0.02536026 0.6606514 0.030651358 FALSE 0.5 0.030651358 FALSE 0.044487491 0.5132862 0.03689889 0.3787145 107806 66 62139 62140 1 41 Same + + 123.7930004 450.380705432 0 7.481717e+02 2.0 1.385958 2.166865 0.7519381 809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis] J S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1.306224 1.995534 0.6985287 343 Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis] J queuine tRNA-ribosyltransferase J TRUE TRUE 36 TRUE 3.3561716 3.48259594 4.2923009 1.015497 2.8627840 Y 2.2813077 0.9949627 3.76 0.5643446 0.99460720 0.6748217 0.995831807 TRUE 0.5 0.995831807 TRUE 0.919968812 0.9949627 0.89872249 0.9913170 107806 66 62140 62141 1 25 Same + + 51.3117900 178.517244516 0 3.335854e+02 NA 1.306224 1.995534 0.6985287 343 Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis] J queuine tRNA-ribosyltransferase 1.522431 2.359248 0.9117326 1862 Preprotein translocase subunit YajC [Intracellular trafficking and secretion] U hypothetical protein - TRUE TRUE 37 TRUE 2.6224066 2.58888334 2.8003325 1.015497 0.5877867 N 0.7691331 0.9569373 2.79 0.8195059 0.95206650 0.8791350 0.989032856 TRUE 0.5 0.989032856 TRUE 0.954323729 0.9569373 0.82148201 0.9277692 107806 66 62142 369941 1 -25 Same - - 191.0241225 365.144501367 0 1.070225e+03 2.0 1.408753 2.089173 0.7032704 751 Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] J glycyl-tRNA synthetase beta chain 1.382938 2.048686 0.7177716 752 Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis] J glycyl-tRNA synthetase alpha chain J FALSE TRUE 37 TRUE 3.8260580 3.92470268 3.9426272 1.015497 2.8627840 Y 2.2813077 0.9961429 0.11 0.9123457 0.99587561 0.9434213 0.999602264 TRUE 0.5 0.999602264 TRUE 0.989570933 0.9961429 0.90114890 0.9933457 107806 66 62144 62145 1 35 Same + + 0.0000000 -18.977370808 0 -1.755312e+01 51.7 1.348376 2.085357 0.7347969 648 Endonuclease IV [DNA replication, recombination, and repair] L endonuclease IV 1.570835 2.314473 0.8767914 1825 Ribosomal protein L25 (general stress protein Ctc) [Translation, ribosomal structure and biogenesis] J 50S ribosomal protein L25 - TRUE TRUE 37 TRUE 0.3916026 0.13879844 0.1257388 1.015497 0.8617829 N 0.7691331 0.5262512 3.36 0.6733299 0.04109244 0.7675531 0.081160270 FALSE 0.5 0.081160270 FALSE 0.111089693 0.5262512 0.05716535 0.3910112 107806 66 62147 62148 1 54 Same + + 25.4398747 -36.546534239 0 1.665029e+02 51.7 1.426307 2.052295 0.7258131 - - - survival protein SurA precursor 1.393650 2.078537 0.7014102 30 Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] J dimethyladenosine transferase TRUE TRUE 38 TRUE 1.8748092 1.87573033 0.5354559 1.015497 0.8617829 U 0.3764776 0.8369572 4.36 0.4449249 0.79249906 0.5621921 0.753776752 TRUE 0.5 0.753776752 TRUE 0.534702620 0.8369572 0.58909657 0.7479286 107806 66 62148 62149 1 45 Same + + 29.1988785 -26.048408499 0 2.479580e+02 51.7 1.393650 2.078537 0.7014102 30 Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] J dimethyladenosine transferase 1.402353 2.135556 0.7478576 - - - bis(5'-nucleosyl)-tetraphosphatase TRUE TRUE 39 TRUE 2.0378815 2.22672692 0.1710003 1.015497 0.8617829 U 0.3764776 0.8526933 4.01 0.5059488 0.81598577 0.6212972 0.819532032 TRUE 0.5 0.819532032 TRUE 0.624234274 0.8526933 0.61863617 0.7698949 107806 66 62150 62151 1 90 Same - - 0.0000000 -23.495848436 0 -3.061988e+01 51.7 1.309033 1.977791 0.7572724 262 Dihydrofolate reductase [Coenzyme metabolism] H dihydrofolate reductase 1.430527 2.283724 0.7995104 458 Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] EF carbamoyl-phosphate synthase large chain - FALSE TRUE 39 TRUE 0.3916026 0.10579798 0.1216534 1.015497 0.8617829 N 0.7691331 0.5210320 5.62 0.2677062 0.02536026 0.3693444 0.009422608 FALSE 0.5 0.009422608 FALSE 0.018483830 0.5210320 0.04898989 0.3860403 107806 66 62151 62152 1 14 Same - - 213.2632562 372.464080513 0 1.115399e+03 2.0 1.430527 2.283724 0.7995104 458 Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] EF carbamoyl-phosphate synthase large chain 1.470969 2.336493 0.8273425 505 Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism] EF carbamoyl-phosphate synthase small chain EF FALSE TRUE 38 TRUE 3.9357079 3.98691533 4.0034078 1.015497 2.8627840 Y 2.2813077 0.9964763 1.91 0.9124306 0.99623332 0.9434779 0.999637262 TRUE 0.5 0.999637262 TRUE 0.989661183 0.9964763 0.90183453 0.9939193 107806 66 62152 62153 1 210 Same - - 8.2659808 40.834677627 0 1.892230e+02 51.7 1.470969 2.336493 0.8273425 505 Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism] EF carbamoyl-phosphate synthase small chain 1.446123 2.302532 0.8147427 289 Dihydrodipicolinate reductase [Amino acid transport and metabolism] E dihydrodipicolinate reductase E FALSE TRUE 37 TRUE 0.9696850 1.96191263 1.3664442 1.015497 0.8617829 Y 2.2813077 0.8888700 7.98 0.1843811 0.86682736 0.2658695 0.595379885 TRUE 0.5 0.595379885 TRUE 0.332251327 0.8888700 0.68759989 0.8221650 107806 66 62153 62154 1 4 Same - - 0.0000000 -20.394739805 0 -1.949416e+01 51.7 1.446123 2.302532 0.8147427 289 Dihydrodipicolinate reductase [Amino acid transport and metabolism] E dihydrodipicolinate reductase 1.277151 2.022974 0.7114784 761 Penicillin tolerance protein [Lipid metabolism / Cell envelope biogenesis, outer membrane] IM LytB protein - FALSE TRUE 36 TRUE 0.3916026 0.10910994 0.1089136 1.015497 0.8617829 N 0.7691331 0.5203516 1.19 0.9295750 0.02536026 0.9548447 0.255649334 FALSE 0.5 0.255649334 FALSE 0.399197242 0.5203516 0.04792575 0.3853943 107806 66 62154 62155 1 65 Same - - 18.7929574 -18.423883504 0 2.514511e+02 51.7 1.277151 2.022974 0.7114784 761 Penicillin tolerance protein [Lipid metabolism / Cell envelope biogenesis, outer membrane] IM LytB protein 1.566946 2.452882 0.8651369 597 Lipoprotein signal peptidase [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion] MU lipoprotein signal peptidase M FALSE TRUE 35 TRUE 1.5477166 2.23949055 0.1402608 1.015497 0.8617829 Y 2.2813077 0.8765560 4.73 0.3863375 0.84999284 0.5021319 0.781052621 TRUE 0.5 0.781052621 TRUE 0.554347838 0.8765560 0.66395904 0.8040888 107806 66 62155 62156 1 0 Same - - 114.5602586 254.635857592 0 6.099935e+02 51.7 1.566946 2.452882 0.8651369 597 Lipoprotein signal peptidase [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion] MU lipoprotein signal peptidase 1.434259 2.152915 0.7441713 60 Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] J isoleucyl-tRNA synthetase - FALSE TRUE 34 TRUE 3.2925790 3.14412485 3.4329383 1.015497 0.8617829 N 0.7691331 0.9807183 0.79 0.9292673 0.97905781 0.9546420 0.998374501 TRUE 0.5 0.998374501 TRUE 0.988712524 0.9807183 0.86957673 0.9671043 107806 66 62156 62157 1 17 Same - - 58.2383542 259.216386599 0 5.637070e+02 51.7 1.434259 2.152915 0.7441713 60 Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] J isoleucyl-tRNA synthetase 1.514185 2.292448 0.7815421 196 FAD synthase [Coenzyme metabolism] H riboflavin kinase - FALSE TRUE 33 TRUE 2.7241984 3.08660343 3.4709683 1.015497 0.8617829 N 0.7691331 0.9768968 2.23 0.8946867 0.97480898 0.9315531 0.996967370 TRUE 0.5 0.996967370 TRUE 0.981473644 0.9768968 0.86180066 0.9606927 107806 66 62159 62160 1 113 Same - - 207.9081347 582.960560830 0 1.320993e+03 51.7 1.433431 2.243893 0.7696796 484 DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] O DnaJ protein 1.394887 2.188675 0.7571702 443 Molecular chaperone [Posttranslational modification, protein turnover, chaperones] O DnaK protein O FALSE TRUE 32 TRUE 3.9064493 4.23932606 5.0549261 1.015497 0.8617829 Y 2.2813077 0.9964069 6.36 0.1997773 0.99615892 0.2856868 0.984789878 TRUE 0.5 0.984789878 TRUE 0.696033344 0.9964069 0.90169188 0.9937999 107806 66 62161 62162 1 34 Same + + 16.8623503 118.384923500 0 1.375191e+02 8.0 1.494560 2.407663 0.9065431 838 NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion] C NADH dehydrogenase I chain A 1.429458 2.298081 0.7996369 377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Energy production and conversion] C NADH dehydrogenase I chain B C TRUE TRUE 32 TRUE 1.3941453 1.73157840 1.9863453 1.015497 2.2963730 Y 2.2813077 0.9361613 3.32 0.6833772 0.92736345 0.7756679 0.964980841 TRUE 0.5 0.964980841 TRUE 0.884442324 0.9361613 0.78003183 0.8944725 107806 66 62162 62163 1 91 Same + + 17.4601435 133.551785201 0 1.591333e+02 8.0 1.429458 2.298081 0.7996369 377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Energy production and conversion] C NADH dehydrogenase I chain B 1.370075 2.150924 0.7203160 649 NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Energy production and conversion] C NADH dehydrogenase I chain C/D C TRUE TRUE 33 TRUE 1.4843809 1.81506269 2.1531237 1.015497 2.2963730 Y 2.2813077 0.9438503 5.66 0.2632805 0.93663259 0.3640738 0.840821630 TRUE 0.5 0.840821630 TRUE 0.581334824 0.9438503 0.79531120 0.9066822 107806 66 62163 62164 1 23 Same + + 25.1230814 147.012561852 0 1.787126e+02 8.0 1.370075 2.150924 0.7203160 649 NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Energy production and conversion] C NADH dehydrogenase I chain C/D 1.340394 2.089059 0.7562792 1905 NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion] C NADH dehydrogenase I chain E C TRUE TRUE 34 TRUE 1.8568565 1.90021422 2.2771121 1.015497 2.2963730 Y 2.2813077 0.9537168 2.68 0.8373139 0.94830769 0.8918364 0.989519948 TRUE 0.5 0.989519948 TRUE 0.957765141 0.9537168 0.81502232 0.9225438 107806 66 62164 62165 1 -3 Same + + 104.0593004 178.248316081 0 5.141720e+02 8.0 1.340394 2.089059 0.7562792 1905 NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion] C NADH dehydrogenase I chain E 1.425320 2.288644 0.8102871 1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion] C NADH dehydrogenase I chain F C TRUE TRUE 35 TRUE 3.1886007 2.97283094 2.7831823 1.015497 2.2963730 Y 2.2813077 0.9856403 0.54 0.9256581 0.98448153 0.9522610 0.998735628 TRUE 0.5 0.998735628 TRUE 0.989128240 0.9856403 0.87961880 0.9754144 107806 66 62165 62166 1 94 Same + + 34.9354814 155.793884718 0 2.102327e+02 8.0 1.425320 2.288644 0.8102871 1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion] C NADH dehydrogenase I chain F 1.378927 2.131085 0.7300425 1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion] C NADH dehydrogenase I chain G C TRUE TRUE 36 TRUE 2.3078456 2.02423293 2.4350621 1.015497 2.2963730 Y 2.2813077 0.9639919 5.78 0.2493025 0.96021228 0.3472670 0.889068416 TRUE 0.5 0.889068416 TRUE 0.628098163 0.9639919 0.83567615 0.9392989 107806 66 62166 62167 1 12 Same + + 39.0626158 158.031931290 0 2.165979e+02 13.0 1.378927 2.131085 0.7300425 1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion] C NADH dehydrogenase I chain G 1.381896 2.231237 0.7765243 1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion] C NADH dehydrogenase I chain H C TRUE TRUE 37 TRUE 2.3776032 2.08707983 2.4511155 1.015497 1.5802077 Y 2.2813077 0.9591126 1.78 0.9173300 0.95459099 0.9467417 0.995731362 TRUE 0.5 0.995731362 TRUE 0.981350710 0.9591126 0.82585218 0.9313120 107806 66 62167 62168 1 25 Same + + 67.1199259 175.645387195 0 3.312074e+02 2.0 1.381896 2.231237 0.7765243 1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion] C NADH dehydrogenase I chain H 1.322656 2.060625 0.7599478 1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion] C NADH dehydrogenase I chain I C TRUE TRUE 38 TRUE 2.8080656 2.56235898 2.7490373 1.015497 2.8627840 Y 2.2813077 0.9823430 2.79 0.8195059 0.98085416 0.8791350 0.995719269 TRUE 0.5 0.995719269 TRUE 0.968923803 0.9823430 0.87288820 0.9698409 107806 66 62168 62169 1 10 Same + + 46.0723518 177.301528416 0 2.840037e+02 13.0 1.322656 2.060625 0.7599478 1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion] C NADH dehydrogenase I chain I 1.336210 2.163834 0.8250160 839 NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion] C NADH dehydrogenase I chain J C TRUE TRUE 39 TRUE 2.5602906 2.40589466 2.7660838 1.015497 1.5802077 Y 2.2813077 0.9710110 1.58 0.9233987 0.96819971 0.9507672 0.997282739 TRUE 0.5 0.997282739 TRUE 0.985556330 0.9710110 0.84985994 0.9508863 107806 66 62169 62170 1 31 Same + + 216.9891408 351.329931719 0 1.048089e+03 8.0 1.336210 2.163834 0.8250160 839 NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion] C NADH dehydrogenase I chain J 1.483077 2.478695 0.9076547 713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion] C NADH dehydrogenase I chain K C TRUE TRUE 40 TRUE 3.9549484 3.83199311 3.8421833 1.015497 2.2963730 Y 2.2813077 0.9952530 3.24 0.7055369 0.99491950 0.7933219 0.997873304 TRUE 0.5 0.997873304 TRUE 0.955361293 0.9952530 0.89931920 0.9918157 107806 66 62170 62171 1 -3 Same + + 179.3567406 266.843690999 0 6.395684e+02 11.0 1.483077 2.478695 0.9076547 713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion] C NADH dehydrogenase I chain K 1.486158 2.346238 0.8268843 1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion / Inorganic ion transport and metabolism] CP NADH dehydrogenase I chain L C TRUE TRUE 41 TRUE 3.6988522 3.21660469 3.5476318 1.015497 1.6223950 Y 2.2813077 0.9902156 0.54 0.9256581 0.98947485 0.9522610 0.999146437 TRUE 0.5 0.999146437 TRUE 0.990069880 0.9902156 0.88898084 0.9831922 107806 66 62171 62172 1 97 Same + + 179.0585283 249.009719694 0 6.592057e+02 3.0 1.486158 2.346238 0.8268843 1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion / Inorganic ion transport and metabolism] CP NADH dehydrogenase I chain L 1.395708 2.227539 0.7732381 1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion] C NADH dehydrogenase I chain M C TRUE TRUE 42 TRUE 3.6878853 3.26039434 3.4139989 1.015497 2.7824945 Y 2.2813077 0.9926595 5.90 0.2353524 0.99212326 0.3302466 0.974854322 TRUE 0.5 0.974854322 TRUE 0.721890200 0.9926595 0.89399256 0.9873681 107806 66 62172 62173 1 58 Same + + 196.5011711 334.539823721 0 9.074274e+02 3.0 1.395708 2.227539 0.7732381 1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion] C NADH dehydrogenase I chain M 1.505263 2.464347 0.8732873 1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion] C NADH dehydrogenase I chain N C TRUE TRUE 43 TRUE 3.8566119 3.66377845 3.7824237 1.015497 2.7824945 Y 2.2813077 0.9951724 4.49 0.4224654 0.99483281 0.5395672 0.992949522 TRUE 0.5 0.992949522 TRUE 0.867058074 0.9951724 0.89915352 0.9916772 107806 66 62173 62174 1 1126 Same + + 0.0000000 -33.455086864 0 -4.051788e+01 51.7 1.505263 2.464347 0.8732873 1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion] C NADH dehydrogenase I chain N 1.433591 2.262092 0.7547143 285 Folylpolyglutamate synthase [Coenzyme metabolism] H folylpolyglutamate synthase - TRUE TRUE 44 TRUE 0.3916026 0.22043514 0.4231996 1.015497 0.8617829 N 0.7691331 0.5652089 8.86 0.2009300 0.18060465 0.2871573 0.052513208 FALSE 0.5 0.052513208 FALSE 0.032826118 0.5652089 0.11892373 0.4290237 107806 66 369960 62176 1 120 Same - - 120.1783870 168.069948592 0 5.073350e+02 51.7 1.454498 2.467768 0.8817012 462 Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism] FE ribose-phosphate pyrophosphokinase 1.424517 2.243415 0.7934936 1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism] I hypothetical protein - FALSE TRUE 44 TRUE 3.3308712 2.95873113 2.6145372 1.015497 0.8617829 N 0.7691331 0.9715498 6.59 0.1911710 0.96880803 0.2746498 0.880111545 TRUE 0.5 0.880111545 TRUE 0.574359837 0.9715498 0.85095118 0.9517805 107806 66 62177 62178 1 -3 Same + + 211.0565432 590.350498057 0 1.265797e+03 51.7 1.450953 2.274118 0.7985018 216 Protein chain release factor A [Translation, ribosomal structure and biogenesis] J peptide chain release factor 1 1.420446 2.149144 0.7659333 2890 Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] J HemK protein J TRUE TRUE 44 TRUE 3.9260083 4.19154044 5.1459947 1.015497 0.8617829 Y 2.2813077 0.9964460 0.54 0.9256581 0.99620083 0.9522610 0.999693809 TRUE 0.5 0.999693809 TRUE 0.991327631 0.9964460 0.90177223 0.9938672 107806 66 62178 62179 1 160 Same + + 5.1922158 -18.793609170 0 1.193703e+02 NA 1.420446 2.149144 0.7659333 2890 Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] J HemK protein 1.432937 2.211667 0.7598027 2912 Uncharacterized conserved protein [Function unknown] S hypothetical protein TRUE TRUE 45 TRUE 0.7528077 1.70806857 0.1331780 1.015497 0.5877867 U 0.3764776 0.7289607 7.35 0.1822921 0.60395001 0.2631551 0.253705926 FALSE 0.5 0.253705926 FALSE 0.126370391 0.7289607 0.39351892 0.6085427 107806 66 62181 62182 1 45 Same + + 50.4758741 161.857417731 0 2.721227e+02 51.7 1.285348 2.030733 0.7114395 282 Acetate kinase [Energy production and conversion] C acetate kinase 1.376666 2.121224 0.7278471 280 Phosphotransacetylase [Energy production and conversion] C phosphate acetyltransferase C TRUE TRUE 46 TRUE 2.6071298 2.32902008 2.4833801 1.015497 0.8617829 Y 2.2813077 0.9600790 4.01 0.5059488 0.95570895 0.6212972 0.956705379 TRUE 0.5 0.956705379 TRUE 0.831161476 0.9600790 0.82779571 0.9328896 107806 66 62183 62184 1 3 Same - - 11.4943768 50.794710028 0 7.498680e+01 51.7 1.354370 2.043550 0.8542587 633 Ferredoxin [Energy production and conversion] C hypothetical protein 1.411843 2.133470 0.7404031 208 Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] F ribonucleoside-diphosphate reductase 1 beta chain - FALSE TRUE 46 TRUE 1.1619160 1.45099505 1.4677636 1.015497 0.8617829 N 0.7691331 0.8310951 1.07 0.9301657 0.78352227 0.9552337 0.979678595 TRUE 0.5 0.979678595 TRUE 0.948067017 0.8310951 0.57816208 0.7398604 107806 66 62184 62185 1 68 Same - - 150.1009210 301.190929830 0 6.882380e+02 2.0 1.411843 2.133470 0.7404031 208 Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] F ribonucleoside-diphosphate reductase 1 beta chain 1.402675 2.179198 0.7597492 209 Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism] F ribonucleoside-diphosphate reductase 1 alpha chain F FALSE TRUE 45 TRUE 3.5157569 3.36342640 3.6250979 1.015497 2.8627840 Y 2.2813077 0.9934198 4.91 0.3636359 0.99294446 0.4779252 0.987717769 TRUE 0.5 0.987717769 TRUE 0.830495789 0.9934198 0.89555312 0.9886701 107806 66 62185 62186 1 73 Same - - 0.0000000 -35.870628287 0 -4.409673e+01 51.7 1.402675 2.179198 0.7597492 209 Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism] F ribonucleoside-diphosphate reductase 1 alpha chain 1.479401 2.336434 0.8086480 188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair] L DNA gyrase subunit A - FALSE TRUE 44 TRUE 0.3916026 0.26402733 0.5014251 1.015497 0.8617829 N 0.7691331 0.5785196 5.10 0.3376272 0.22396535 0.4495164 0.128242084 FALSE 0.5 0.128242084 FALSE 0.076812279 0.5785196 0.14032637 0.4423904 107806 66 62191 62192 1 133 Same + + 0.0000000 -19.226930549 0 -1.974343e+01 51.7 1.510741 2.429999 0.8494568 61 Predicted sugar kinase [Carbohydrate transport and metabolism] G hypothetical protein 1.423952 2.068515 0.8131641 2913 Small protein A (tmRNA-binding) [Translation, ribosomal structure and biogenesis] J small protein A - TRUE TRUE 44 TRUE 0.3916026 0.10025875 0.1208544 1.015497 0.8617829 N 0.7691331 0.5201451 6.82 0.1851817 0.02536026 0.2669081 0.005878765 FALSE 0.5 0.005878765 FALSE 0.011231741 0.5201451 0.04760290 0.3851984 107806 66 62192 62193 1 537 Same + + 0.0000000 -19.612784790 0 -1.465281e+01 51.7 1.423952 2.068515 0.8131641 2913 Small protein A (tmRNA-binding) [Translation, ribosomal structure and biogenesis] J small protein A 1.418393 2.150604 0.8398243 278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] O hypothetical protein - TRUE TRUE 45 TRUE 0.3916026 0.18914558 0.1151815 1.015497 0.8617829 N 0.7691331 0.5326688 8.64 0.1954616 0.06547832 0.2801649 0.016737561 FALSE 0.5 0.016737561 FALSE 0.017214583 0.5326688 0.06724946 0.3971621 107806 66 62195 62196 1 188 Same + + 0.0000000 -23.755643287 0 -3.481021e+01 51.7 1.263818 1.920613 0.7080218 605 Superoxide dismutase [Inorganic ion transport and metabolism] P superoxide dismutase 1.505874 2.303796 0.8354385 193 Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis] J peptidyl-tRNA hydrolase - TRUE TRUE 46 TRUE 0.3916026 0.14557199 0.1248583 1.015497 0.8617829 N 0.7691331 0.5271646 7.78 0.1829997 0.04459925 0.2640753 0.010347911 FALSE 0.5 0.010347911 FALSE 0.013750722 0.5271646 0.05859838 0.3918840 107806 66 62196 62197 1 41 Same + + 93.5756529 237.567195572 0 5.052176e+02 51.7 1.505874 2.303796 0.8354385 193 Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis] J peptidyl-tRNA hydrolase 1.348419 2.036188 0.6894797 12 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] J GTP-binding protein J TRUE TRUE 47 TRUE 3.1090089 2.94465884 3.3387461 1.015497 0.8617829 Y 2.2813077 0.9820484 3.76 0.5643446 0.98052886 0.6748217 0.984901885 TRUE 0.5 0.984901885 TRUE 0.898452811 0.9820484 0.87228746 0.9693442 107806 66 62198 62199 1 7 Same - - 41.4628064 173.689440780 0 2.700013e+02 51.7 1.403557 2.155257 0.7529594 498 Threonine synthase [Amino acid transport and metabolism] E threonine synthase 1.386742 2.231153 0.8117842 83 Homoserine kinase [Amino acid transport and metabolism] E homoserine kinase E FALSE TRUE 47 TRUE 2.4289033 2.31621575 2.7151000 1.015497 0.8617829 Y 2.2813077 0.9610572 1.40 0.9271236 0.95683823 0.9532286 0.996466761 TRUE 0.5 0.996466761 TRUE 0.984129226 0.9610572 0.82976407 0.9344886 107806 66 62199 62200 1 21 Same - - 26.0404835 126.416703570 0 2.160763e+02 51.7 1.386742 2.231153 0.8117842 83 Homoserine kinase [Amino acid transport and metabolism] E homoserine kinase 1.422560 2.179674 0.7636378 527 Aspartokinases [Amino acid transport and metabolism] E aspartokinase I E FALSE TRUE 46 TRUE 1.9108510 2.06188398 2.0464495 1.015497 0.8617829 Y 2.2813077 0.9346613 2.59 0.8517112 0.92553738 0.9019735 0.986186005 TRUE 0.5 0.986186005 TRUE 0.952424664 0.9346613 0.77705932 0.8921058 107806 66 62202 62203 1 15 Same - - 118.4633973 476.972108141 0 7.782011e+02 2.0 1.447553 2.160814 0.7715524 414 Panthothenate synthetase [Coenzyme metabolism] H pantoate-beta-alanine ligase 1.444411 2.285641 0.8076795 413 Ketopantoate hydroxymethyltransferase [Coenzyme metabolism] H 3-methyl-2-oxobutanoate hydroxymethyltransferase H FALSE TRUE 45 TRUE 3.3181520 3.52766112 4.5041336 1.015497 2.8627840 Y 2.2813077 0.9954091 1.99 0.9088937 0.99508733 0.9411141 0.999505375 TRUE 0.5 0.999505375 TRUE 0.988941475 0.9954091 0.89964008 0.9920839 107806 66 62203 62204 1 116 Same - - 5.7692135 -31.597209127 0 -3.639064e+01 NA 1.444411 2.285641 0.8076795 413 Ketopantoate hydroxymethyltransferase [Coenzyme metabolism] H 3-methyl-2-oxobutanoate hydroxymethyltransferase 1.454302 2.150493 0.7820741 1734 DnaK suppressor protein [Signal transduction mechanisms] T DnaK suppressor protein - FALSE TRUE 44 TRUE 0.8055479 0.16062803 0.3669871 1.015497 0.5877867 N 0.7691331 0.5626263 6.48 0.1948995 0.17195394 0.2794438 0.047864859 FALSE 0.5 0.047864859 FALSE 0.030436214 0.5626263 0.11478905 0.4264530 107806 66 62205 62206 1 72 Same + + 0.0000000 -21.684572419 0 -2.411801e+01 51.7 1.324760 2.118095 0.7433647 101 Pseudouridylate synthase [Translation, ribosomal structure and biogenesis] J pseudouridylate synthase I 1.465423 2.279911 0.8039288 744 Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane] M penicillin-binding protein 1B - TRUE TRUE 44 TRUE 0.3916026 0.06150900 0.1096581 1.015497 0.8617829 N 0.7691331 0.5134234 5.04 0.3462821 0.02536026 0.4590517 0.013595781 FALSE 0.5 0.013595781 FALSE 0.020008210 0.5134234 0.03711262 0.3788437 107806 66 62206 62207 1 230 Same + + 0.0000000 -28.791299186 0 -2.582427e+01 51.7 1.465423 2.279911 0.8039288 744 Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane] M penicillin-binding protein 1B 1.344844 2.072976 0.7157173 653 Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] U preprotein translocase SecA subunit - TRUE TRUE 45 TRUE 0.3916026 0.06148552 0.2917377 1.015497 0.8617829 N 0.7691331 0.5300938 8.06 0.1852439 0.05576456 0.2669888 0.013249566 FALSE 0.5 0.013249566 FALSE 0.015106676 0.5300938 0.06319907 0.3946889 107806 66 62207 62208 1 76 Same + + 9.4681101 74.956707833 0 1.040288e+02 NA 1.344844 2.072976 0.7157173 653 Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] U preprotein translocase SecA subunit 1.351474 1.974993 0.7824381 - - - mutator MutT protein TRUE TRUE 46 TRUE 1.0367763 1.59309465 1.6413213 1.015497 0.5877867 U 0.3764776 0.8260026 5.18 0.3258422 0.77562048 0.4363990 0.625573560 TRUE 0.5 0.625573560 TRUE 0.389235228 0.8260026 0.56869354 0.7329012 107806 66 62210 62211 1 227 Same + + 0.0000000 -24.397891978 0 -1.954669e+01 51.7 1.356175 2.221621 0.7780105 516 IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] F GMP reductase 1.383606 2.162436 0.7517440 2609 Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] C pyruvate dehydrogenase E1 component - TRUE TRUE 47 TRUE 0.3916026 0.10727032 0.1404450 1.015497 0.8617829 N 0.7691331 0.5229692 8.04 0.1850118 0.02838973 0.2666878 0.006589403 FALSE 0.5 0.006589403 FALSE 0.012304293 0.5229692 0.05202161 0.3878820 107806 66 62211 369957 1 4 Same + + 31.8204305 84.650213096 0 2.139733e+02 51.7 1.383606 2.162436 0.7517440 2609 Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] C pyruvate dehydrogenase E1 component 1.346836 2.056245 0.7129170 508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] C dihydrolipoamide acetyltransferase C TRUE TRUE 48 TRUE 2.1287307 2.04931384 1.6689263 1.015497 0.8617829 Y 2.2813077 0.9294205 1.19 0.9295750 0.91911122 0.9548447 0.993376666 TRUE 0.5 0.993376666 TRUE 0.977465655 0.9294205 0.76669519 0.8838758 107806 66 369957 62213 1 45 Same + + 43.9541443 136.965864207 0 2.967948e+02 51.7 1.346836 2.056245 0.7129170 508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] C dihydrolipoamide acetyltransferase 1.315438 2.096266 0.7118815 1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] C dihydrolipoamide dehydrogenase C TRUE TRUE 49 TRUE 2.5120472 2.49660122 2.1839252 1.015497 0.8617829 Y 2.2813077 0.9585634 4.01 0.5059488 0.95395478 0.6212972 0.954988820 TRUE 0.5 0.954988820 TRUE 0.828161377 0.9585634 0.82474842 0.9304166 107806 66 62214 62215 1 19 Same - - 5.2311086 53.023346811 0 5.387803e+01 51.7 1.514895 2.308083 0.8010595 1586 S-adenosylmethionine decarboxylase [Amino acid transport and metabolism] E S-adenosylmethionine decarboxylase proenzyme 1.477256 2.176752 0.7616817 421 Spermidine synthase [Amino acid transport and metabolism] E spermidine synthase E FALSE TRUE 49 TRUE 0.7936298 1.30490801 1.5068720 1.015497 0.8617829 Y 2.2813077 0.8446209 2.44 0.8732163 0.80404669 0.9169006 0.965824788 TRUE 0.5 0.965824788 TRUE 0.912898894 0.8446209 0.60344846 0.7585698 107806 66 62215 62216 1 276 Same - - 0.0000000 -19.518460531 0 -2.109620e+01 51.7 1.477256 2.176752 0.7616817 421 Spermidine synthase [Amino acid transport and metabolism] E spermidine synthase 1.361056 2.078392 0.7583534 775 Nucleoside phosphorylase [Nucleotide transport and metabolism] F 5'-methylthioadenosine nucleosidase - FALSE TRUE 48 TRUE 0.3916026 0.08639280 0.1159954 1.015497 0.8617829 N 0.7691331 0.5176624 8.24 0.1877738 0.02536026 0.2702648 0.005979474 FALSE 0.5 0.005979474 FALSE 0.010459885 0.5176624 0.04372388 0.3828459 107806 66 62216 62217 1 64 Same - - 0.0000000 -28.685390952 0 -3.165253e+01 51.7 1.361056 2.078392 0.7583534 775 Nucleoside phosphorylase [Nucleotide transport and metabolism] F 5'-methylthioadenosine nucleosidase 1.615559 2.410957 0.8833685 316 Uncharacterized conserved protein [Function unknown] S hypothetical protein FALSE TRUE 47 TRUE 0.3916026 0.11712168 0.2801420 1.015497 0.8617829 U 0.3764776 0.5191944 4.70 0.3902819 0.02536026 0.5062832 0.016382685 FALSE 0.5 0.016382685 FALSE 0.030017662 0.5191944 0.04611677 0.3842967 107806 66 62217 62218 1 234 Same - - 0.0000000 -24.274605108 0 -3.357434e+01 51.7 1.615559 2.410957 0.8833685 316 Uncharacterized conserved protein [Function unknown] S hypothetical protein 1.413932 2.347830 0.8343179 206 Cell division GTPase [Cell division and chromosome partitioning] D cell division protein FtsZ FALSE TRUE 46 TRUE 0.3916026 0.12956592 0.1356060 1.015497 0.8617829 U 0.3764776 0.5077722 8.09 0.1856117 0.02536026 0.2674656 0.005895428 FALSE 0.5 0.005895428 FALSE 0.006599419 0.5077722 0.02832238 0.3735367 107806 66 62218 62219 1 58 Same - - 181.5221735 317.604462440 0 8.376041e+02 51.7 1.413932 2.347830 0.8343179 206 Cell division GTPase [Cell division and chromosome partitioning] D cell division protein FtsZ 1.336819 2.071338 0.7293975 849 Actin-like ATPase involved in cell division [Cell division and chromosome partitioning] D cell division protein FtsA D FALSE TRUE 45 TRUE 3.7206151 3.55780114 3.7033641 1.015497 0.8617829 Y 2.2813077 0.9907519 4.49 0.4224654 0.99005717 0.5395672 0.986457001 TRUE 0.5 0.986457001 TRUE 0.855560727 0.9907519 0.89008003 0.9841074 107806 66 62219 62220 1 1115 Same - - 181.2350465 -46.016215600 0 7.765140e+01 51.7 1.336819 2.071338 0.7293975 849 Actin-like ATPase involved in cell division [Cell division and chromosome partitioning] D cell division protein FtsA 1.396957 2.157043 0.7613723 773 UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane] M UDP-N-acetylmuramate-alanine ligase - FALSE TRUE 44 TRUE 3.7097621 1.46159660 0.6684086 1.015497 0.8617829 N 0.7691331 0.8854520 8.84 0.2003781 0.86220153 0.2864535 0.610583095 TRUE 0.5 0.610583095 TRUE 0.348538962 0.8854520 0.68102045 0.8171175 107806 66 62220 62221 1 43 Same - - 216.7305603 473.226750977 0 1.133546e+03 51.7 1.396957 2.157043 0.7613723 773 UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane] M UDP-N-acetylmuramate-alanine ligase 1.405528 2.292642 0.8055559 707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] M UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase M FALSE TRUE 43 TRUE 3.9453546 4.00252132 4.4613916 1.015497 0.8617829 Y 2.2813077 0.9949293 3.89 0.5315514 0.99457130 0.6451150 0.995212684 TRUE 0.5 0.995212684 TRUE 0.909597530 0.9949293 0.89865394 0.9912597 107806 66 62221 62222 1 -3 Same - - 175.9084727 395.776794546 0 8.756488e+02 51.7 1.405528 2.292642 0.8055559 707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] M UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 1.431565 2.313143 0.8313628 772 Bacterial cell division membrane protein [Cell division and chromosome partitioning] D cell division protein FtsW - FALSE TRUE 42 TRUE 3.6657601 3.58800155 4.1055809 1.015497 0.8617829 N 0.7691331 0.9894966 0.54 0.9256581 0.98869323 0.9522610 0.999082383 TRUE 0.5 0.999082383 TRUE 0.989922929 0.9894966 0.88750789 0.9819666 107806 66 62222 62223 1 -3 Same - - 171.8209355 394.611887063 0 8.474060e+02 51.7 1.431565 2.313143 0.8313628 772 Bacterial cell division membrane protein [Cell division and chromosome partitioning] D cell division protein FtsW 1.443870 2.249361 0.7971460 771 UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] M UDP-N-acetylmuramoylalanine-D-glutamate ligase - FALSE TRUE 41 TRUE 3.6093023 3.57289369 4.0850582 1.015497 0.8617829 N 0.7691331 0.9891502 0.54 0.9256581 0.98831625 0.9522610 0.999051457 TRUE 0.5 0.999051457 TRUE 0.989851995 0.9891502 0.88679848 0.9813765 107806 66 62223 62224 1 0 Same - - 234.1513459 580.716051524 0 1.336751e+03 9.0 1.443870 2.249361 0.7971460 771 UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] M UDP-N-acetylmuramoylalanine-D-glutamate ligase 1.523472 2.389822 0.8472584 472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane] M phospho-N-acetylmuramoyl-pentapeptide-transferase M FALSE TRUE 40 TRUE 4.0114111 4.25530417 5.0097041 1.015497 1.9481131 Y 2.2813077 0.9973868 0.79 0.9292673 0.99720923 0.9546420 0.999787027 TRUE 0.5 0.999787027 TRUE 0.991954876 0.9973868 0.90370817 0.9954877 107806 66 62224 62225 1 -6 Same - - 200.5735029 487.573653214 0 1.166909e+03 9.0 1.523472 2.389822 0.8472584 472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane] M phospho-N-acetylmuramoyl-pentapeptide-transferase 1.466675 2.302769 0.8055277 770 UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane] M UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase M FALSE TRUE 39 TRUE 3.8666875 4.08087946 4.5686042 1.015497 1.9481131 Y 2.2813077 0.9964528 0.39 0.9221387 0.99620818 0.9499329 0.999678720 TRUE 0.5 0.999678720 TRUE 0.990887906 0.9964528 0.90178632 0.9938790 107806 66 62225 62226 1 -3 Same - - 175.5471876 489.505991286 0 1.073230e+03 5.0 1.466675 2.302769 0.8055277 770 UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane] M UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase 1.464414 2.254399 0.7877909 769 UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane] M UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase M FALSE TRUE 38 TRUE 3.6320780 3.94022459 4.5901904 1.015497 2.6514158 Y 2.2813077 0.9966214 0.54 0.9256581 0.99638898 0.9522610 0.999709024 TRUE 0.5 0.999709024 TRUE 0.991362642 0.9966214 0.90213308 0.9941691 107806 66 62226 62227 1 1 Same - - 171.3682988 514.790610296 0 1.102485e+03 51.7 1.464414 2.254399 0.7877909 769 UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane] M UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase 1.416142 2.275666 0.7955003 768 Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane] M cell division protein FtsI M FALSE TRUE 37 TRUE 3.5978203 3.95576719 4.6988497 1.015497 0.8617829 Y 2.2813077 0.9947175 0.93 0.9301231 0.99434327 0.9552056 0.999572795 TRUE 0.5 0.999572795 TRUE 0.991558916 0.9947175 0.89821856 0.9908959 107806 66 62227 62228 1 65 Same - - 0.0000000 41.863994058 0 4.186399e+01 51.7 1.416142 2.275666 0.7955003 768 Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane] M cell division protein FtsI NA NA NA FALSE TRUE 36 TRUE 0.3916026 1.14934662 1.3913572 1.015497 0.8617829 U 0.3764776 0.7488024 4.73 0.3863375 0.64266960 0.5021319 0.531019149 TRUE 0.5 0.531019149 TRUE 0.320705631 0.7488024 0.42854325 0.6327587 107806 66 62228 62229 1 3 Same - - 0.0000000 52.550835059 0 5.255084e+01 51.7 NA NA NA 1.447633 2.263928 0.7925731 275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] M hypothetical protein FALSE TRUE 35 TRUE 0.3916026 1.27363893 1.4937706 1.015497 0.8617829 U 0.3764776 0.7690550 1.07 0.9301657 0.68013051 0.9552337 0.965894950 TRUE 0.5 0.965894950 TRUE 0.920402456 0.7690550 0.46470624 0.6580953 107806 66 62229 62230 1 122 Same - - 0.0000000 -27.312371062 0 -3.542347e+01 51.7 1.447633 2.263928 0.7925731 275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] M hypothetical protein 1.395394 2.315861 0.8664526 440 Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism] E acetolactate synthase small subunit - FALSE TRUE 34 TRUE 0.3916026 0.15294207 0.2146625 1.015497 0.8617829 N 0.7691331 0.5364512 6.64 0.1896375 0.07957800 0.2726724 0.019831331 FALSE 0.5 0.019831331 FALSE 0.018149945 0.5364512 0.07320939 0.4008076 107806 66 62230 62231 1 5 Same - - 239.0597150 457.600911156 0 1.238284e+03 51.7 1.395394 2.315861 0.8664526 440 Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism] E acetolactate synthase small subunit 1.545439 2.515721 0.8922873 28 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] EH acetolactate synthase large subunit E FALSE TRUE 33 TRUE 4.0389433 4.14397320 4.3764736 1.015497 0.8617829 Y 2.2813077 0.9953138 1.30 0.9285269 0.99498483 0.9541541 0.999612163 TRUE 0.5 0.999612163 TRUE 0.991467815 0.9953138 0.89944410 0.9919201 107806 66 62233 62234 1 61 Same - - 6.0286800 -26.365983695 0 -2.454869e+01 51.7 1.336227 2.092661 0.7550734 2171 Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] E 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 1.324419 2.021900 0.6875035 24 Methionine aminopeptidase [Translation, ribosomal structure and biogenesis] J methionine aminopeptidase - FALSE TRUE 32 TRUE 0.8542934 0.05968394 0.1834573 1.015497 0.8617829 N 0.7691331 0.5532702 4.63 0.3999642 0.13993854 0.5164059 0.097843855 FALSE 0.5 0.097843855 FALSE 0.068855230 0.5532702 0.09985881 0.4172013 107806 66 62235 62236 1 77 Same + + 217.2617781 522.093568867 0 1.374482e+03 51.7 1.387820 2.180448 0.7854180 52 Ribosomal protein S2 [Translation, ribosomal structure and biogenesis] J 30S ribosomal protein S2 1.586240 2.468419 0.8814696 264 Translation elongation factor Ts [Translation, ribosomal structure and biogenesis] J elongation factor Ts J TRUE TRUE 32 TRUE 3.9644895 4.28733609 4.7207284 1.015497 0.8617829 Y 2.2813077 0.9961182 5.24 0.3169819 0.99584911 0.4264340 0.991098521 TRUE 0.5 0.991098521 TRUE 0.808734663 0.9961182 0.90109813 0.9933032 107806 66 62236 62237 1 51 Same + + 159.2967511 443.703648733 0 9.415326e+02 51.7 1.586240 2.468419 0.8814696 264 Translation elongation factor Ts [Translation, ribosomal structure and biogenesis] J elongation factor Ts 1.454615 2.388877 0.8696638 528 Uridylate kinase [Nucleotide transport and metabolism] F uridylate kinase - TRUE TRUE 33 TRUE 3.5630065 3.69420427 4.2296540 1.015497 0.8617829 N 0.7691331 0.9902795 4.31 0.4532364 0.98954428 0.5704429 0.987413856 TRUE 0.5 0.987413856 TRUE 0.869222062 0.9902795 0.88911182 0.9833013 107806 66 62237 62238 1 81 Same + + 315.4341649 544.954198610 0 1.629326e+03 NA 1.454615 2.388877 0.8696638 528 Uridylate kinase [Nucleotide transport and metabolism] F uridylate kinase 1.471396 2.284665 0.8152875 233 Ribosome recycling factor [Translation, ribosomal structure and biogenesis] J ribosome recycling factor - TRUE TRUE 34 TRUE 4.1864089 4.53096374 4.8087382 1.015497 0.5877867 N 0.7691331 0.9956572 5.36 0.2997125 0.99535396 0.4067527 0.989211376 TRUE 0.5 0.989211376 TRUE 0.794166598 0.9956572 0.90015009 0.9925104 107806 66 62238 62239 1 83 Same + + 169.4839035 40.839569380 0 5.937959e+01 NA 1.471396 2.284665 0.8152875 233 Ribosome recycling factor [Translation, ribosomal structure and biogenesis] J ribosome recycling factor 1.418656 2.268442 0.7906568 743 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism] I 1-deoxy-D-xylulose 5-phosphate reductoisomerase - TRUE TRUE 35 TRUE 3.5746716 1.34663065 1.3788652 1.015497 0.5877867 N 0.7691331 0.8932437 5.44 0.2888778 0.87269499 0.3942268 0.735782059 TRUE 0.5 0.735782059 TRUE 0.481923864 0.8932437 0.69603863 0.8286579 107806 66 62239 62240 1 93 Same + + 182.9282935 32.911167629 0 7.720571e+02 51.7 1.418656 2.268442 0.7906568 743 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism] I 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.262093 1.923143 0.6904097 20 Undecaprenyl pyrophosphate synthase [Lipid metabolism] I undecaprenyl pyrophosphate synthetase I TRUE TRUE 36 TRUE 3.7314115 3.51261703 1.3054272 1.015497 0.8617829 Y 2.2813077 0.9774778 5.72 0.2563724 0.97545707 0.3557983 0.931984041 TRUE 0.5 0.931984041 TRUE 0.684681333 0.9774778 0.86298168 0.9616652 107806 66 62240 62241 1 234 Same + + 3.9120230 -1.605166958 0 -1.664130e+00 51.7 1.262093 1.923143 0.6904097 20 Undecaprenyl pyrophosphate synthase [Lipid metabolism] I undecaprenyl pyrophosphate synthetase 1.354445 1.998344 0.6671555 4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane] M hypothetical protein - TRUE TRUE 37 TRUE 0.6001629 0.28042088 0.2985656 1.015497 0.8617829 N 0.7691331 0.5774644 8.09 0.1856117 0.22060101 0.2674656 0.060599907 FALSE 0.5 0.060599907 FALSE 0.035381414 0.5774644 0.13862406 0.4413236 107806 66 62241 62242 1 37 Same + + 0.0000000 -1.231307190 0 -1.270068e+00 51.7 1.354445 1.998344 0.6671555 4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane] M hypothetical protein 1.374700 2.087313 0.7328338 587 DNA polymerase III, alpha subunit [DNA replication, recombination, and repair] L DNA polymerase III alpha chain - TRUE TRUE 38 TRUE 0.3916026 0.28460455 0.3055209 1.015497 0.8617829 N 0.7691331 0.5638763 3.47 0.6452511 0.17615092 0.7445000 0.280008983 FALSE 0.5 0.280008983 FALSE 0.193885119 0.5638763 0.11678958 0.4276963 107806 66 62244 369953 1 -7 Same + + 124.0513260 190.756064247 0 5.952927e+02 7.0 1.466980 2.280423 0.8005166 1377 Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion] NU flagellar biosynthetic protein FlhB 1.355915 2.197696 0.7702363 1298 Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion] NU flagellar biosynthesis protein FlhA NU TRUE TRUE 39 TRUE 3.3687512 3.11531212 3.0101642 1.015497 2.4978456 Y 2.2813077 0.9890479 0.31 0.9198057 0.98820490 0.9483861 0.998960439 TRUE 0.5 0.998960439 TRUE 0.988970316 0.9890479 0.88658906 0.9812024 107806 66 2132586 2132587 1 113 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA NA NA NA NA NA NA TRUE TRUE 40 TRUE 0.3916026 0.54630426 0.5829441 1.015497 0.5877867 U 0.3764776 0.5904595 6.36 0.1997773 0.26119724 0.2856868 0.081103910 FALSE 0.5 0.081103910 FALSE 0.045283885 0.5904595 0.15965784 0.4545508 107806 66 2132587 2132588 1 15 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA NA NA NA NA NA NA TRUE TRUE 41 TRUE 0.3916026 0.54630426 0.5829441 1.015497 0.5877867 U 0.3764776 0.5904595 1.99 0.9088937 0.26119724 0.9411141 0.779102962 TRUE 0.5 0.779102962 TRUE 0.654623598 0.5904595 0.15965784 0.4545508 107806 66 62248 2132589 1 69 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA 1.349037 2.032618 0.7152648 847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair] L DNA polymerase III epsilon chain NA NA NA TRUE TRUE 42 TRUE 0.3916026 0.54630426 0.5829441 1.015497 0.5877867 U 0.3764776 0.5904595 4.94 0.3597905 0.26119724 0.4737710 0.165753262 FALSE 0.5 0.165753262 FALSE 0.096472388 0.5904595 0.15965784 0.4545508 107806 66 2132589 62249 1 84 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA NA NA NA 1.355676 2.100383 0.7704580 279 Phosphoheptose isomerase [Carbohydrate transport and metabolism] G phosphoheptose isomerase TRUE TRUE 43 TRUE 0.3916026 0.54630426 0.5829441 1.015497 0.5877867 U 0.3764776 0.5904595 5.49 0.2825041 0.26119724 0.3867930 0.122192551 FALSE 0.5 0.122192551 FALSE 0.069599994 0.5904595 0.15965784 0.4545508 107806 66 62249 369952 1 107 Same + + 0.0000000 -23.650069744 0 -2.456193e+01 51.7 1.355676 2.100383 0.7704580 279 Phosphoheptose isomerase [Carbohydrate transport and metabolism] G phosphoheptose isomerase 1.480333 2.379583 0.8421111 503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism] F xanthine-guanine phosphoribosyltransferase - TRUE TRUE 44 TRUE 0.3916026 0.05952338 0.1226709 1.015497 0.8617829 N 0.7691331 0.5143245 6.26 0.2047433 0.02536026 0.2920090 0.006654451 FALSE 0.5 0.006654451 FALSE 0.010208321 0.5143245 0.03851677 0.3796930 107806 66 369952 62251 1 101 Same + + 0.0000000 -0.149940147 0 -2.062936e-01 51.7 1.480333 2.379583 0.8421111 503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism] F xanthine-guanine phosphoribosyltransferase 1.301516 1.845777 0.6451043 576 Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones] O heat shock protein GrpE1 - TRUE TRUE 45 TRUE 0.3916026 0.32303316 0.3315030 1.015497 0.8617829 N 0.7691331 0.5717671 6.08 0.2171181 0.20222077 0.3076179 0.065680737 FALSE 0.5 0.065680737 FALSE 0.039605480 0.5717671 0.12944938 0.4355847 107806 66 62253 62254 1 9 Same + + 0.0000000 -28.717656202 0 -4.158443e+01 51.7 1.344726 1.949521 0.7479513 691 tmRNA-binding protein [Posttranslational modification, protein turnover, chaperones] O small protein B 1.545569 2.330147 0.8363365 590 Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] FJ hypothetical protein YfhC - TRUE TRUE 46 TRUE 0.3916026 0.22383747 0.2878389 1.015497 0.8617829 N 0.7691331 0.5534577 1.49 0.9254647 0.14059090 0.9521333 0.670099020 TRUE 0.5 0.670099020 TRUE 0.580188209 0.5534577 0.10015733 0.4173858 107806 66 62255 62256 1 125 Same - - 41.2011345 -34.671195585 0 -1.868852e+01 51.7 1.508165 2.271762 0.8628016 736 Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism] I holo-[acyl-carrier protein] synthase 1.397847 2.102552 0.7376198 1159 GTPase [General function prediction only] R GTP-binding protein Era FALSE TRUE 46 TRUE 2.4119107 0.12090993 0.4533668 1.015497 0.8617829 U 0.3764776 0.6744726 6.69 0.1881720 0.48590302 0.2707796 0.179706810 FALSE 0.5 0.179706810 FALSE 0.090105123 0.6744726 0.29934481 0.5449580 107806 66 62256 62257 1 -3 Same - - 102.1448112 393.358884144 0 6.733868e+02 51.7 1.397847 2.102552 0.7376198 1159 GTPase [General function prediction only] R GTP-binding protein Era 1.418485 2.229232 0.7836988 571 dsRNA-specific ribonuclease [Transcription] K ribonuclease III FALSE TRUE 45 TRUE 3.1489651 3.33386817 4.0645798 1.015497 0.8617829 U 0.3764776 0.9846141 0.54 0.9256581 0.98335524 0.9522610 0.998642436 TRUE 0.5 0.998642436 TRUE 0.988914906 0.9846141 0.87752267 0.9736770 107806 66 62257 62258 1 131 Same - - 85.5378335 316.884970734 0 6.241553e+02 51.7 1.418485 2.229232 0.7836988 571 dsRNA-specific ribonuclease [Transcription] K ribonuclease III 1.410968 2.116507 0.7239304 681 Signal peptidase I [Intracellular trafficking and secretion] U signal peptidase I - FALSE TRUE 44 TRUE 3.0282131 3.17304053 3.6837227 1.015497 0.8617829 N 0.7691331 0.9813216 6.80 0.1855066 0.97972551 0.2673294 0.916707735 TRUE 0.5 0.916707735 TRUE 0.605545879 0.9813216 0.87080592 0.9681197 107806 66 62258 62259 1 16 Same - - 66.2832225 212.825016944 0 4.982929e+02 51.7 1.410968 2.116507 0.7239304 681 Signal peptidase I [Intracellular trafficking and secretion] U signal peptidase I 1.360070 2.144174 0.7444107 481 Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] M GTP-binding protein LepA - FALSE TRUE 43 TRUE 2.7801719 2.90260840 3.0997790 1.015497 0.8617829 N 0.7691331 0.9711425 2.13 0.9013884 0.96834826 0.9360764 0.996436869 TRUE 0.5 0.996436869 TRUE 0.981078234 0.9711425 0.85012628 0.9511045 107806 66 369944 62261 1 36 Same + + 20.0940002 189.422124157 0 2.319273e+02 NA 1.420913 2.142187 0.7513884 482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis] J tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1.526187 2.352290 0.8481859 2915 Uncharacterized protein involved in purine metabolism [General function prediction only] R hypothetical protein TRUE TRUE 43 TRUE 1.6470013 2.13767244 2.9923950 1.015497 0.5877867 U 0.3764776 0.9276364 3.39 0.6659948 0.91690706 0.7615845 0.956527106 TRUE 0.5 0.956527106 TRUE 0.865330559 0.9276364 0.76317452 0.8810877 107806 66 62261 62262 1 39 Same + + 13.1818193 165.315172253 0 2.053063e+02 NA 1.526187 2.352290 0.8481859 2915 Uncharacterized protein involved in purine metabolism [General function prediction only] R hypothetical protein 1.454045 2.230896 0.7847431 15 Adenylosuccinate lyase [Nucleotide transport and metabolism] F adenylosuccinate lyase TRUE TRUE 44 TRUE 1.2046686 1.98677146 2.5485395 1.015497 0.5877867 U 0.3764776 0.8976092 3.66 0.5921020 0.87849465 0.6992908 0.913006800 TRUE 0.5 0.913006800 TRUE 0.775808119 0.8976092 0.70448368 0.8351772 107806 66 62262 62263 1 24 Same + + 0.0000000 -3.725942363 0 -3.725942e+00 NA 1.454045 2.230896 0.7847431 15 Adenylosuccinate lyase [Nucleotide transport and metabolism] F adenylosuccinate lyase 1.512986 2.327414 0.8074717 741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane] M membrane-bound lytic murein transglycosylase E - TRUE TRUE 45 TRUE 0.3916026 0.24730289 0.2787429 1.015497 0.5877867 N 0.7691331 0.5375339 2.75 0.8259129 0.08357730 0.8837257 0.302004140 FALSE 0.5 0.302004140 FALSE 0.277567258 0.5375339 0.07491758 0.4018538 107806 66 62263 62264 1 114 Same + + 0.0000000 -0.703870465 0 -7.038705e-01 NA 1.512986 2.327414 0.8074717 741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane] M membrane-bound lytic murein transglycosylase E 1.405115 2.248010 0.8165310 623 Enoyl-[acyl-carrier-protein] I enoyl-[acyl-carrier-protein] reductase (NADH) - TRUE TRUE 46 TRUE 0.3916026 0.29724250 0.3090715 1.015497 0.5877867 N 0.7691331 0.5475917 6.41 0.1976206 0.11997394 0.2829306 0.032486351 FALSE 0.5 0.032486351 FALSE 0.024016022 0.5475917 0.09083413 0.4116326 107806 66 62264 62265 1 187 Same + + 5.1922158 -10.643340210 0 1.806395e+01 51.7 1.405115 2.248010 0.8165310 623 Enoyl-[acyl-carrier-protein] I enoyl-[acyl-carrier-protein] reductase (NADH) 1.378733 2.134977 0.7449524 4776 Exoribonuclease II [Transcription] K exoribonuclease II - TRUE TRUE 47 TRUE 0.7528077 1.02764487 0.2396848 1.015497 0.8617829 N 0.7691331 0.6845687 7.76 0.1828902 0.50919447 0.2639330 0.188451224 FALSE 0.5 0.188451224 FALSE 0.093940963 0.6845687 0.31657632 0.5564293 107806 66 62265 62266 1 109 Same + + 0.0000000 -16.325929594 0 -1.662384e+01 NA 1.378733 2.134977 0.7449524 4776 Exoribonuclease II [Transcription] K exoribonuclease II 1.303964 2.170542 0.8115217 2095 Multiple antibiotic transporter [Intracellular trafficking and secretion] U hypothetical protein - TRUE TRUE 48 TRUE 0.3916026 0.15935544 0.1826611 1.015497 0.5877867 N 0.7691331 0.5158416 6.31 0.2021421 0.02536026 0.2887017 0.006549184 FALSE 0.5 0.006549184 FALSE 0.010683870 0.5158416 0.04088219 0.3811246 107806 66 62266 62267 1 38 Same + + 0.0000000 -18.872968069 0 -2.251062e+01 NA 1.303964 2.170542 0.8115217 2095 Multiple antibiotic transporter [Intracellular trafficking and secretion] U hypothetical protein 1.351282 2.021180 0.7270859 321 Lipoate-protein ligase B [Coenzyme metabolism] H lipoate-protein ligase B - TRUE TRUE 49 TRUE 0.3916026 0.07064124 0.1300187 1.015497 0.5877867 N 0.7691331 0.4979621 3.57 0.6176140 0.02536026 0.7212548 0.040331636 FALSE 0.5 0.040331636 FALSE 0.034574610 0.4979621 0.02169197 0.3644001 107806 66 62267 62268 1 119 Same + + 68.8330630 133.798575542 0 4.404072e+02 3.0 1.351282 2.021180 0.7270859 321 Lipoate-protein ligase B [Coenzyme metabolism] H lipoate-protein ligase B 1.357493 2.071503 0.7130459 320 Lipoate synthase [Coenzyme metabolism] H lipoic acid synthetase H TRUE TRUE 50 TRUE 2.8358894 2.83308733 2.1685074 1.015497 2.7824945 Y 2.2813077 0.9811326 6.54 0.1927957 0.97951638 0.2767412 0.919493685 TRUE 0.5 0.919493685 TRUE 0.616031600 0.9811326 0.87042071 0.9678014 107806 66 62268 62269 1 105 Same + + 4.2195077 -22.968515548 0 -2.855436e+01 51.7 1.357493 2.071503 0.7130459 320 Lipoate synthase [Coenzyme metabolism] H lipoic acid synthetase 1.426599 2.180681 0.7996870 284 Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism] F orotidine 5'-phosphate decarboxylase - TRUE TRUE 51 TRUE 0.6195015 0.08104708 0.1159720 1.015497 0.8617829 N 0.7691331 0.5333533 6.19 0.2088387 0.06804486 0.2971976 0.018908440 FALSE 0.5 0.018908440 FALSE 0.018991041 0.5333533 0.06832716 0.3978207 107806 66 62269 62270 1 48 Same + + 0.0000000 -23.393307620 0 -2.194366e+01 51.7 1.426599 2.180681 0.7996870 284 Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism] F orotidine 5'-phosphate decarboxylase 1.504008 2.334974 0.8480270 807 GTP cyclohydrolase II [Coenzyme metabolism] H GTP cyclohydrolase II - TRUE TRUE 52 TRUE 0.3916026 0.07727323 0.1197716 1.015497 0.8617829 N 0.7691331 0.5166681 4.15 0.4801119 0.02536026 0.5966839 0.023465494 FALSE 0.5 0.023465494 FALSE 0.039071353 0.5166681 0.04217182 0.3819055 107806 66 62271 62272 1 346 Same - - 0.0000000 -26.308684681 0 -2.394880e+01 51.7 1.385621 2.089470 0.8228356 2916 DNA-binding protein H-NS [General function prediction only] R DNA-binding protein H-ns 1.403852 2.232298 0.7785798 1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism] I cardiolipin synthetase FALSE TRUE 52 TRUE 0.3916026 0.06195805 0.1808778 1.015497 0.8617829 U 0.3764776 0.5019782 8.48 0.1921238 0.02536026 0.2758767 0.006149881 FALSE 0.5 0.006149881 FALSE 0.005245365 0.5019782 0.02169197 0.3681289 107806 66 62272 62273 1 381 Same - - 0.0000000 -32.375668921 0 -2.939920e+01 6.0 1.403852 2.232298 0.7785798 1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism] I cardiolipin synthetase 1.412014 2.300794 0.8853698 1607 Acyl-CoA hydrolase [Lipid metabolism] I hypothetical protein I FALSE TRUE 51 TRUE 0.3916026 0.09082592 0.3991343 1.015497 2.5864064 Y 2.2813077 0.7161566 8.59 0.1943734 0.57782498 0.2787686 0.248246172 FALSE 0.5 0.248246172 FALSE 0.124638019 0.7161566 0.37112707 0.5932244 107806 66 62273 62274 1 37 Same - - 8.2982962 77.523205495 0 9.412036e+01 51.7 1.412014 2.300794 0.8853698 1607 Acyl-CoA hydrolase [Lipid metabolism] I hypothetical protein 1.339345 2.018506 0.7619841 2917 Intracellular septation protein A [Cell division and chromosome partitioning] D hypothetical protein - FALSE TRUE 50 TRUE 0.9829464 1.54842071 1.6550952 1.015497 0.8617829 N 0.7691331 0.8412570 3.47 0.6452511 0.79900395 0.7445000 0.878500872 TRUE 0.5 0.878500872 TRUE 0.729442443 0.8412570 0.59714094 0.7538859 107806 66 62274 62275 1 28 Same - - 2.2571227 29.645417482 0 3.190254e+01 NA 1.339345 2.018506 0.7619841 2917 Intracellular septation protein A [Cell division and chromosome partitioning] D hypothetical protein 1.397429 2.185719 0.8121857 - - - hypothetical protein FALSE TRUE 49 TRUE 0.3871524 1.08806057 1.2815405 1.015497 0.5877867 U 0.3764776 0.7190713 2.97 0.7822476 0.58385387 0.8519621 0.834439963 TRUE 0.5 0.834439963 TRUE 0.684201136 0.7190713 0.37621001 0.5966906 107806 66 62275 62276 1 105 Same - - 0.0000000 -19.131991048 0 -1.785599e+01 NA 1.397429 2.185719 0.8121857 - - - hypothetical protein 1.220448 1.875879 0.6453914 159 Tryptophan synthase alpha chain [Amino acid transport and metabolism] E tryptophan synthase alpha chain FALSE TRUE 48 TRUE 0.3916026 0.13408490 0.1231819 1.015497 0.5877867 U 0.3764776 0.4886233 6.19 0.2088387 0.02536026 0.2971976 0.006821544 FALSE 0.5 0.006821544 FALSE 0.005818819 0.4886233 0.02169197 0.3557909 107806 66 62276 62277 1 19 Same - - 259.1066630 452.047899277 0 1.287055e+03 2.0 1.220448 1.875879 0.6453914 159 Tryptophan synthase alpha chain [Amino acid transport and metabolism] E tryptophan synthase alpha chain 1.389413 2.203919 0.7846526 133 Tryptophan synthase beta chain [Amino acid transport and metabolism] E tryptophan synthase beta chain E FALSE TRUE 47 TRUE 4.1101264 4.22337289 4.3342948 1.015497 2.8627840 Y 2.2813077 0.9974162 2.44 0.8732163 0.99724066 0.9169006 0.999598420 TRUE 0.5 0.999598420 TRUE 0.984775661 0.9974162 0.90376859 0.9955382 107806 66 62277 62278 1 38 Same - - 10.7140977 127.835842292 0 1.585841e+02 3.0 1.389413 2.203919 0.7846526 133 Tryptophan synthase beta chain [Amino acid transport and metabolism] E tryptophan synthase beta chain 1.354539 2.067438 0.7189369 134 Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] E indole-3-glycerol phosphate synthase E FALSE TRUE 46 TRUE 1.1336789 1.80302819 2.0615757 1.015497 2.7824945 Y 2.2813077 0.9433265 3.57 0.6176140 0.93600598 0.7212548 0.959389293 TRUE 0.5 0.959389293 TRUE 0.861795108 0.9433265 0.79426810 0.9058463 107806 66 62278 62279 1 -19 Same - - 15.9098285 91.930384915 0 1.395427e+02 51.7 1.354539 2.067438 0.7189369 134 Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] E indole-3-glycerol phosphate synthase 1.298487 1.994966 0.6917061 547 Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism] E anthranilate phosphoribosyltransferase E FALSE TRUE 45 TRUE 1.3059879 1.74339274 1.7530768 1.015497 0.8617829 Y 2.2813077 0.8993529 0.16 0.9144490 0.88079546 0.9448240 0.987496854 TRUE 0.5 0.987496854 TRUE 0.962825042 0.8993529 0.70786304 0.8377920 107806 66 62280 62281 1 29 Same + + 1.6094379 -11.058106560 0 -1.302406e+01 51.7 1.387107 2.254720 0.8082541 - - - hypothetical protein 1.412202 2.194175 0.7761733 1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis] J hypothetical protein TRUE TRUE 45 TRUE 0.3258150 0.20937113 0.2339690 1.015497 0.8617829 U 0.3764776 0.5237545 3.04 0.7637622 0.03144364 0.8381706 0.094988468 FALSE 0.5 0.094988468 FALSE 0.153866868 0.5237545 0.05325154 0.3886297 107806 66 62281 369943 1 75 Same + + 0.0000000 -20.301616966 0 -2.038960e+01 51.7 1.412202 2.194175 0.7761733 1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis] J hypothetical protein 1.454711 2.223092 0.7897902 616 Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] OU possible protease SohB - TRUE TRUE 46 TRUE 0.3916026 0.09224207 0.1096948 1.015497 0.8617829 N 0.7691331 0.5179447 5.16 0.3288006 0.02536026 0.4397065 0.012586063 FALSE 0.5 0.012586063 FALSE 0.022133597 0.5179447 0.04416462 0.3831131 107806 66 369943 62283 1 87 Same + + 0.0000000 -24.044337419 0 4.372289e+01 51.7 1.454711 2.223092 0.7897902 616 Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] OU possible protease SohB 1.397140 2.110810 0.7310089 550 Topoisomerase IA [DNA replication, recombination, and repair] L DNA topoisomerase I - TRUE TRUE 47 TRUE 0.3916026 1.19057753 0.1298360 1.015497 0.8617829 N 0.7691331 0.6738587 5.57 0.2730915 0.48446426 0.3757253 0.260926916 FALSE 0.5 0.260926916 FALSE 0.137715075 0.6738587 0.29830019 0.5442649 107806 66 62285 62286 1 51 Same + + 40.7948753 -37.045727877 0 -1.162143e+01 51.7 1.327154 2.070244 0.7111386 820 Predicted Fe-S-cluster redox enzyme [General function prediction only] R hypothetical protein 1.303244 2.092396 0.7367995 821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis [Lipid metabolism] I GcpE protein TRUE TRUE 48 TRUE 2.3948089 0.22018266 0.5530997 1.015497 0.8617829 U 0.3764776 0.6939311 4.31 0.4532364 0.53018738 0.5704429 0.483329613 FALSE 0.5 0.483329613 FALSE 0.292379082 0.6939311 0.33264317 0.5671904 107806 66 62286 62287 1 26 Same + + 48.8852679 200.309311688 0 4.289975e+02 51.7 1.303244 2.092396 0.7367995 821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis [Lipid metabolism] I GcpE protein 1.363500 2.046749 0.7103435 124 Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] J histidyl-tRNA synthetase - TRUE TRUE 49 TRUE 2.5760666 2.77798699 3.0637795 1.015497 0.8617829 N 0.7691331 0.9667649 2.85 0.8089814 0.96338175 0.8715425 0.991104796 TRUE 0.5 0.991104796 TRUE 0.957349587 0.9667649 0.84127250 0.9438629 107806 66 62287 62288 1 60 Same + + 2.8033604 -31.027754193 0 -5.222060e+01 51.7 1.363500 2.046749 0.7103435 124 Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] J histidyl-tRNA synthetase 1.329390 2.086919 0.7308536 112 Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] E serine hydroxymethyltransferase - TRUE TRUE 50 TRUE 0.4606451 0.28402704 0.3581170 1.015497 0.8617829 N 0.7691331 0.5734386 4.58 0.4074329 0.20765117 0.5241496 0.152680550 FALSE 0.5 0.152680550 FALSE 0.094766898 0.5734386 0.13213816 0.4372647 107806 66 62289 62290 1 365 Same - - 81.2239101 -21.111610521 0 1.051635e+02 3.0 1.462773 2.286058 0.8287150 132 Dethiobiotin synthetase [Coenzyme metabolism] H dethiobiotin synthetase 1.295057 1.968329 0.6869055 502 Biotin synthase and related enzymes [Coenzyme metabolism] H biotin synthetase H FALSE TRUE 50 TRUE 2.9600768 1.61572574 0.1084070 1.015497 2.7824945 Y 2.2813077 0.9251607 8.56 0.1937418 0.91383429 0.2779574 0.718189665 TRUE 0.5 0.718189665 TRUE 0.429835633 0.9251607 0.75829522 0.8772302 107806 66 62292 62293 1 124 Same - - 0.0000000 -5.235850772 0 1.645036e-02 51.7 1.444976 2.146131 0.7574673 2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] G hypothetical protein 1.416040 2.139495 0.7413709 1197 Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] LK transcription-repair coupling factor - FALSE TRUE 49 TRUE 0.3916026 0.89131052 0.2755733 1.015497 0.8617829 N 0.7691331 0.6463489 6.66 0.1890444 0.41718622 0.2719068 0.143003332 FALSE 0.5 0.143003332 FALSE 0.072765206 0.6463489 0.25185603 0.5137124 107806 66 62294 62295 1 -7 Same + + 86.4366263 226.824515474 0 5.502847e+02 14.0 1.438695 2.204351 0.7883670 4591 ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane] M hypothetical protein 1.452774 2.203321 0.7790265 1136 ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] V hypothetical ABC transporter ATP-binding protein YcfV - TRUE TRUE 49 TRUE 3.0552691 3.02950255 3.2643029 1.015497 1.5241092 N 0.7691331 0.9803828 0.31 0.9198057 0.97868614 0.9483861 0.998104856 TRUE 0.5 0.998104856 TRUE 0.987015374 0.9803828 0.86889334 0.9665400 107806 66 62295 62296 1 1325 Same + + 3.0910425 -29.090180702 0 -3.583446e+01 51.7 1.452774 2.203321 0.7790265 1136 ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] V hypothetical ABC transporter ATP-binding protein YcfV 1.302546 2.122331 0.7361599 57 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism] G glyceraldehyde 3-phosphate dehydrogenase A - TRUE TRUE 50 TRUE 0.4786545 0.15546863 0.2996182 1.015497 0.8617829 N 0.7691331 0.5508179 8.90 0.2020724 0.13136741 0.2886129 0.036886915 FALSE 0.5 0.036886915 FALSE 0.026176818 0.5508179 0.09595813 0.4147922 107806 66 62298 62299 1 -3 Same + + 0.0000000 -17.165774726 0 -2.104173e+01 NA 1.426328 2.110655 0.7309428 415 Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] L deoxyribodipyrimidine photolyase 1.358106 2.063272 0.7224159 327 Uncharacterized conserved protein [Function unknown] S hypothetical protein TRUE TRUE 51 TRUE 0.3916026 0.08780986 0.1601657 1.015497 0.5877867 U 0.3764776 0.4852097 0.54 0.9256581 0.02536026 0.9522610 0.244705092 FALSE 0.5 0.244705092 FALSE 0.216352186 0.4852097 0.02169197 0.3526653 107806 66 62299 62300 1 125 Same + + 0.0000000 -34.519844520 0 -3.426564e+01 NA 1.358106 2.063272 0.7224159 327 Uncharacterized conserved protein [Function unknown] S hypothetical protein 1.332254 2.010226 0.6794553 567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] C 2-oxoglutarate dehydrogenase E1 component TRUE TRUE 52 TRUE 0.3916026 0.13622501 0.4482381 1.015497 0.5877867 U 0.3764776 0.5187535 6.69 0.1881720 0.02536026 0.2707796 0.005994997 FALSE 0.5 0.005994997 FALSE 0.010910401 0.5187535 0.04542793 0.3838790 107806 66 62300 62301 1 16 Same + + 79.6148282 428.495360084 0 6.468348e+02 51.7 1.332254 2.010226 0.6794553 567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] C 2-oxoglutarate dehydrogenase E1 component 1.377963 2.098826 0.7214733 508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] C dihydrolipoamide succinyltransferase C TRUE TRUE 53 TRUE 2.9326391 3.23117637 4.1467594 1.015497 0.8617829 Y 2.2813077 0.9880621 2.13 0.9013884 0.98713038 0.9360764 0.998575743 TRUE 0.5 0.998575743 TRUE 0.985925212 0.9880621 0.88457108 0.9795250 107806 66 62301 62302 1 98 Same + + 3.3322045 -24.174097486 0 -2.661741e+01 51.7 1.377963 2.098826 0.7214733 508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] C dihydrolipoamide succinyltransferase 1.424945 2.131707 0.7599045 588 Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism] G phosphoglycerate mutase - TRUE TRUE 54 TRUE 0.5207346 0.06467584 0.1340900 1.015497 0.8617829 N 0.7691331 0.5254740 5.95 0.2298472 0.03809841 0.3234607 0.011682476 FALSE 0.5 0.011682476 FALSE 0.017378939 0.5254740 0.05594634 0.3902691 107806 66 62302 62303 1 184 Same + + 0.0000000 -16.702498037 0 -2.060773e+01 9.0 1.424945 2.131707 0.7599045 588 Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism] G phosphoglycerate mutase 1.428604 2.365057 0.8577910 205 6-phosphofructokinase [Carbohydrate transport and metabolism] G 6-phosphofructokinase isozyme I G TRUE TRUE 55 TRUE 0.3916026 0.09073406 0.1681013 1.015497 1.9481131 Y 2.2813077 0.6607400 7.71 0.1826239 0.45308007 0.2635867 0.156183444 FALSE 0.5 0.156183444 FALSE 0.078511524 0.6607400 0.27606315 0.5295726 107806 66 62303 62304 1 66 Same + + 0.0000000 -24.615858288 0 -2.897653e+01 51.7 1.428604 2.365057 0.8577910 205 6-phosphofructokinase [Carbohydrate transport and metabolism] G 6-phosphofructokinase isozyme I 1.553290 2.470073 0.8572003 580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] G glycerol uptake facilitator protein G TRUE TRUE 56 TRUE 0.3916026 0.08642364 0.1439113 1.015497 0.8617829 Y 2.2813077 0.5887950 4.79 0.3786838 0.25609755 0.4940310 0.173432953 FALSE 0.5 0.173432953 FALSE 0.101908475 0.5887950 0.15695537 0.4528458 107806 66 62305 62306 1 99 Same - - 0.0000000 -19.689577991 0 -2.616277e+01 51.7 1.454305 2.243402 0.8015730 149 Triosephosphate isomerase [Carbohydrate transport and metabolism] G triosephosphate isomerase 1.399309 2.206535 0.9026884 776 Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair] L integration host factor beta-subunit - FALSE TRUE 56 TRUE 0.3916026 0.06290789 0.1124248 1.015497 0.8617829 N 0.7691331 0.5138828 6.00 0.2246416 0.02536026 0.3170076 0.007482306 FALSE 0.5 0.007482306 FALSE 0.011262459 0.5138828 0.03782833 0.3792766 107806 66 62306 62307 1 96 Same - - 80.4225617 191.420200376 0 4.838102e+02 51.7 1.399309 2.206535 0.9026884 776 Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair] L integration host factor beta-subunit 1.318468 2.082126 0.7147018 539 Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] J 30S ribosomal protein S1 - FALSE TRUE 55 TRUE 2.9463703 2.88864752 3.0279847 1.015497 0.8617829 N 0.7691331 0.9715220 5.85 0.2410783 0.96877666 0.3372629 0.907885953 TRUE 0.5 0.907885953 TRUE 0.644479468 0.9715220 0.85089486 0.9517343 107806 66 62307 62308 1 839 Same - - 74.7785258 -38.815651189 0 3.105842e+02 51.7 1.318468 2.082126 0.7147018 539 Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] J 30S ribosomal protein S1 1.403475 2.276294 0.8044431 128 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism] E 3-phosphoshikimate 1-carboxyvinyltransferase - FALSE TRUE 54 TRUE 2.9051054 2.52280881 0.5772995 1.015497 0.8617829 N 0.7691331 0.9170529 8.74 0.1977938 0.90365512 0.2831521 0.698122421 TRUE 0.5 0.698122421 TRUE 0.415364188 0.9170529 0.74236691 0.8646893 107806 66 62308 62309 1 67 Same - - 23.5350333 65.370573532 0 6.448665e+01 51.7 1.403475 2.276294 0.8044431 128 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism] E 3-phosphoshikimate 1-carboxyvinyltransferase 1.448929 2.244700 0.7929023 1932 Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] HE phosphoserine aminotransferase E FALSE TRUE 53 TRUE 1.8033337 1.40914602 1.6003492 1.015497 0.8617829 Y 2.2813077 0.8890904 4.86 0.3699308 0.86712452 0.4846917 0.793024944 TRUE 0.5 0.793024944 TRUE 0.564239781 0.8890904 0.68802473 0.8224913 107806 66 62309 62310 1 39 Same - - 2.2437446 -28.110662384 0 -3.532691e+01 51.7 1.448929 2.244700 0.7929023 1932 Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] HE phosphoserine aminotransferase 1.410559 2.118762 0.7526801 172 Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] J seryl-tRNA synthetase - FALSE TRUE 52 TRUE 0.3809382 0.15045061 0.2371352 1.015497 0.8617829 N 0.7691331 0.5373684 3.66 0.5921020 0.08296721 0.6992908 0.116085232 FALSE 0.5 0.116085232 FALSE 0.104836359 0.5373684 0.07465648 0.4016939 107806 66 62311 62312 1 107 Same + + 4.5893311 -31.340669299 0 -4.364376e+01 51.7 1.477986 2.372812 0.8306213 492 Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] O thioredoxin reductase 1.528131 2.488576 0.9776657 361 Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis] J translation initiation factor IF-1 - TRUE TRUE 52 TRUE 0.6495880 0.24881720 0.3625351 1.015497 0.8617829 N 0.7691331 0.5821443 6.26 0.2047433 0.23542958 0.2920090 0.073453593 FALSE 0.5 0.073453593 FALSE 0.042217873 0.5821443 0.14618162 0.4460649 107806 66 62312 62313 1 169 Same + + 0.0000000 -26.640202690 0 -4.206348e+01 51.7 1.528131 2.488576 0.9776657 361 Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis] J translation initiation factor IF-1 1.304852 1.979317 0.6720160 173 Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] J aspartyl-tRNA synthetase J TRUE TRUE 53 TRUE 0.3916026 0.23785981 0.1914567 1.015497 0.8617829 Y 2.2813077 0.6143354 7.53 0.1819605 0.33130828 0.2627237 0.099267055 FALSE 0.5 0.099267055 FALSE 0.052273274 0.6143354 0.19869674 0.4793637 107806 66 62314 62315 1 58 Same - - 159.2000345 355.331118812 0 6.385059e+02 51.7 1.495520 2.566024 0.9430849 1108 ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism] P high-affinity zinc uptake system membrane protein ZnuB 1.288916 2.022417 0.72308