Taxon Scaffold Gene1 Gene2 Consecutive Sep Code Strand1 Strand2 GNScore GNWithin GNAll GNMinus GOScore CAI CAI.Alm CBI COG COGanno COGfun Description nCAI nCAI.Alm nCBI nCOG nCOGanno nCOGfun nDescription COGsim forward forwardplus sumBias same bbfGNScore bbfGNMinus bbfGNWithin bbfGNAll bbfGOScore COGsimClass cfCOG pSame groupIndexD pSameD pOpLogistic pOpDistance pOp1 bOp1 pCAI pOp bOp pOp2 pSame pOpLogisticLike pOpLogisticM 187272 4479 2155829 2155830 1 221 Same + + 155.4084949 415.774028086 0 8.634631e+02 192.4 1.822085 2.484292 0.8343785 593 ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] L chromosomal replication initiator protein DnaA 2.181720 3.011615 0.9412031 592 DNA polymerase sliding clamp subunit (PCNA homolog) [DNA replication, recombination, and repair] L DNA polymerase III, beta subunit L FALSE FALSE 1 TRUE 4.5811623 3.8705685 4.0504461 1.082041 0.9479597 Y 2.5510465 0.9930045 36.88793103 0.10499909 0.9925750 0.1745085 0.94005884 TRUE 0.5 0.94005884 TRUE 0.49675520 0.9930045 0.8937749 0.9885863 187272 4479 2155830 2155831 1 65 Same + + 113.2858032 309.291089020 0 7.348471e+02 192.4 2.181720 3.011615 0.9412031 592 DNA polymerase sliding clamp subunit (PCNA homolog) [DNA replication, recombination, and repair] L DNA polymerase III, beta subunit 2.183745 3.050690 0.9655941 1195 Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair] L DNA replication and repair protein RecF L FALSE FALSE 2 TRUE 4.2780718 3.7826625 3.9101412 1.082041 0.9479597 Y 2.5510465 0.9914859 27.02586207 0.49069922 0.9909493 0.6345207 0.99060947 TRUE 0.5 0.99060947 TRUE 0.88678104 0.9914859 0.8904633 0.9861219 187272 4479 2155831 2155832 1 72 Same + + 67.9143161 216.721003185 0 3.847856e+02 14.0 2.183745 3.050690 0.9655941 1195 Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair] L DNA replication and repair protein RecF 1.616284 2.173513 0.7416733 187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] L DNA gyrase, B subunit L FALSE FALSE 3 TRUE 3.7593472 3.4197347 3.6643080 1.082041 3.0494695 Y 2.5510465 0.9938752 27.95689655 0.44966389 0.9935049 0.5955215 0.99206229 TRUE 0.5 0.99206229 TRUE 0.87523349 0.9938752 0.8956758 0.9900014 187272 4479 2155832 2155833 1 28 Same + + 0.0000000 -10.556176408 0 -2.043145e+01 192.4 1.616284 2.173513 0.7416733 187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] L DNA gyrase, B subunit 1.984312 2.791974 0.9115109 1877 Trehalose-6-phosphatase [Carbohydrate transport and metabolism] G HAD-superfamily hydrolase, subfamily IIB - FALSE FALSE 4 TRUE 0.6028627 0.2831904 0.4022408 1.082041 0.9479597 N 0.9181581 0.5772730 21.15517241 0.71167998 0.2281971 0.8164420 0.42190404 FALSE 0.5 0.42190404 FALSE 0.27604890 0.5772730 0.1338077 0.4545209 187272 4479 2155833 2155834 1 -7 Same + + 16.5821965 21.875088917 0 5.549464e+01 192.4 1.984312 2.791974 0.9115109 1877 Trehalose-6-phosphatase [Carbohydrate transport and metabolism] G HAD-superfamily hydrolase, subfamily IIB 1.917357 2.600724 0.8445739 3387 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism] G glycoside hydrolase 15-related G FALSE FALSE 5 TRUE 2.2681099 2.1324230 2.1226109 1.082041 0.9479597 Y 2.5510465 0.9404610 1.75862069 0.94277797 0.9332750 0.9674145 0.99567932 TRUE 0.5 0.99567932 TRUE 0.98334721 0.9404610 0.7818522 0.9059987 187272 4479 2155834 2155835 1 55 Same + + 15.2322697 13.901128825 0 6.081606e+01 192.4 1.917357 2.600724 0.8445739 3387 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism] G glycoside hydrolase 15-related 1.934466 2.654307 0.8785158 380 Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism] G Alpha,alpha-trehalose-phosphate synthase (UDP-forming) G FALSE FALSE 6 TRUE 2.1766983 2.1542238 1.9858485 1.082041 0.9479597 Y 2.5510465 0.9364626 25.57758621 0.53031236 0.9284901 0.6704600 0.93614297 TRUE 0.5 0.93614297 TRUE 0.79411121 0.9364626 0.7735540 0.8999323 187272 4479 2155835 2155836 1 6 Same + + 0.0000000 -1.063371495 0 -4.873504e+00 192.4 1.934466 2.654307 0.8785158 380 Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism] G Alpha,alpha-trehalose-phosphate synthase (UDP-forming) 2.212694 3.111866 1.0104269 837 Glucokinase [Carbohydrate transport and metabolism] G Glucokinase G FALSE FALSE 7 TRUE 0.6028627 0.3117096 0.4152003 1.082041 0.9479597 Y 2.5510465 0.7017317 15.20689655 0.70828963 0.5520147 0.8139615 0.74949224 TRUE 0.5 0.74949224 TRUE 0.54921531 0.7017317 0.3341241 0.5894152 187272 4479 2155837 2155838 1 -3 Same - - 14.0421564 16.662999878 0 1.209922e+02 192.4 1.939644 2.708469 0.9230747 204 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism] I phospholipid/glycerol acyltransferase 1.861339 2.594936 0.8653511 241 Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism] E histidinol-phosphate phosphatase family protein - TRUE FALSE 7 TRUE 2.0914175 2.5222042 2.0320421 1.082041 0.9479597 N 0.9181581 0.9078913 4.87068966 0.71360060 0.8930713 0.8178434 0.95414976 TRUE 0.5 0.95414976 TRUE 0.86215835 0.9078913 0.7151231 0.8574349 187272 4479 2155838 2155839 1 -25 Same - - 10.9957081 -6.247672005 0 9.313766e+01 192.4 1.861339 2.594936 0.8653511 241 Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism] E histidinol-phosphate phosphatase family protein 1.664178 2.293008 0.8032648 751 Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] J Glycine--tRNA ligase - TRUE FALSE 6 TRUE 1.8323658 2.3750416 0.3915129 1.082041 0.9479597 N 0.9181581 0.8358464 0.12068966 0.97901327 0.7930089 0.9882435 0.99443575 TRUE 0.5 0.99443575 TRUE 0.98435380 0.8358464 0.5742230 0.7565087 187272 4479 2155839 2155840 1 -7 Same - - 160.4417973 289.364718824 0 7.999181e+02 2.0 1.664178 2.293008 0.8032648 751 Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] J Glycine--tRNA ligase 1.536695 2.091774 0.7283825 752 Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis] J Glycine--tRNA ligase J TRUE FALSE 5 TRUE 4.6399388 3.8358981 3.8696191 1.082041 3.2284294 Y 2.5510465 0.9967674 1.75862069 0.94277797 0.9965819 0.9674145 0.99979187 TRUE 0.5 0.99979187 TRUE 0.99344891 0.9967674 0.9020011 0.9947132 187272 4479 2155841 2155842 1 110 Same + + 2.5070635 30.096210189 0 3.982621e+01 NA 1.408799 1.902996 0.6614045 174 Glutamine synthetase [Amino acid transport and metabolism] E glutamine synthetase, type I 1.844703 2.511636 0.9018858 - - - hypothetical protein FALSE FALSE 5 TRUE 0.9160922 2.0237936 2.2598863 1.082041 0.9952947 U 0.8785504 0.8451316 31.98275862 0.21964190 0.8068627 0.3365098 0.54041114 TRUE 0.5 0.54041114 TRUE 0.28987539 0.8451316 0.5918854 0.7690416 187272 4479 2155842 2155843 1 149 Same + + 0.0000000 69.598500538 0 7.250534e+01 NA 1.844703 2.511636 0.9018858 - - - hypothetical protein 1.699416 2.325331 0.8078282 3852 Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] T signal transduction histidine kinase, nitrogen specific, NtrB FALSE FALSE 6 TRUE 0.6028627 2.2348629 2.6737983 1.082041 0.9952947 U 0.8785504 0.8559816 34.75862069 0.13591016 0.8226703 0.2208337 0.42186119 FALSE 0.5 0.42186119 FALSE 0.19925127 0.8559816 0.6127062 0.7838590 187272 4479 2155843 2155844 1 -3 Same + + 46.1331967 237.774164699 0 4.003952e+02 192.4 1.699416 2.325331 0.8078282 3852 Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] T signal transduction histidine kinase, nitrogen specific, NtrB 1.898422 2.621362 0.8416232 2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] T nitrogen metabolism transcriptional regulator, NtrC, Fis Family T FALSE FALSE 7 TRUE 3.3419286 3.4431865 3.7330764 1.082041 0.9479597 Y 2.5510465 0.9851815 4.87068966 0.71360060 0.9841468 0.8178434 0.99357646 TRUE 0.5 0.99357646 TRUE 0.94660083 0.9851815 0.8767650 0.9759421 187272 4479 2155845 2155846 1 -3 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 1.604350 2.214089 0.8393169 602 Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones] O Radical SAM domain protein 1.723517 2.427160 0.8351430 - - - hypothetical protein TRUE FALSE 7 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 4.87068966 0.71360060 0.4896175 0.8178434 0.70503692 TRUE 0.5 0.70503692 TRUE 0.50111387 0.6737417 0.2873109 0.5575311 187272 4479 2155846 2155847 1 110 Same - - 0.0000000 -0.045120435 0 -4.872922e-01 NA 1.723517 2.427160 0.8351430 - - - hypothetical protein 1.262955 1.703130 0.5275326 459 Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] O chaperonin GroEL TRUE FALSE 6 TRUE 0.6028627 0.4639188 0.5165574 1.082041 0.9952947 U 0.8785504 0.6040551 31.98275862 0.21964190 0.3091467 0.3365098 0.11186151 FALSE 0.5 0.11186151 FALSE 0.05643337 0.6040551 0.1752521 0.4821029 187272 4479 2155847 2155848 1 43 Same - - 259.8708446 468.204558800 0 1.177403e+03 12.0 1.262955 1.703130 0.5275326 459 Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] O chaperonin GroEL 1.273953 1.733940 0.8106688 234 Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones] O chaperonin Cpn10 O TRUE FALSE 5 TRUE 5.0033555 3.9756027 4.1478724 1.082041 3.1454153 Y 2.5510465 0.9974922 23.65517241 0.58947741 0.9973502 0.7212505 0.99815317 TRUE 0.5 0.99815317 TRUE 0.93083313 0.9974922 0.9035888 0.9958966 187272 4479 2155849 2155850 1 10 Same + + 8.2415365 79.606723388 0 1.563188e+02 NA 1.854070 2.534925 0.8872372 1324 Uncharacterized protein involved in tolerance to divalent cations [Inorganic ion transport and metabolism] P CutA1 divalent ion tolerance protein 1.977625 2.759567 0.9346336 4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] OC cytochrome c biogenesis protein, transmembrane region - FALSE FALSE 5 TRUE 1.5109369 2.6936729 2.7642113 1.082041 0.9952947 N 0.9181581 0.9141629 16.40517241 0.82280922 0.9010355 0.8932489 0.97689389 TRUE 0.5 0.97689389 TRUE 0.92546924 0.9141629 0.7278203 0.8666372 187272 4479 2155850 2155851 1 -3 Same + + 3.5048565 -0.093873398 0 3.028680e-01 192.4 1.977625 2.759567 0.9346336 4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] OC cytochrome c biogenesis protein, transmembrane region 1.720100 2.354479 0.8683536 1225 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] O Redoxin domain protein O FALSE FALSE 6 TRUE 1.0386387 1.4006294 0.5034319 1.082041 0.9479597 Y 2.5510465 0.8157872 4.87068966 0.71360060 0.7620034 0.8178434 0.88861096 TRUE 0.5 0.88861096 TRUE 0.74257417 0.8157872 0.5365485 0.7298875 187272 4479 2155851 2155852 1 128 Same + + 4.1866181 -2.958827334 0 3.790109e+01 192.4 1.720100 2.354479 0.8683536 1225 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] O Redoxin domain protein 1.774335 2.422109 0.8421111 757 3-dehydroquinate dehydratase II [Amino acid transport and metabolism] E 3-dehydroquinate dehydratase, type II - FALSE FALSE 7 TRUE 1.1178746 1.9934443 0.3916773 1.082041 0.9479597 N 0.9181581 0.7671581 33.42241379 0.16919577 0.6801076 0.2684561 0.30215196 FALSE 0.5 0.30215196 FALSE 0.14177130 0.7671581 0.4478608 0.6678161 187272 4479 2155852 2155853 1 0 Same + + 56.5149380 186.197096248 0 3.561660e+02 192.4 1.774335 2.422109 0.8421111 757 3-dehydroquinate dehydratase II [Amino acid transport and metabolism] E 3-dehydroquinate dehydratase, type II 1.506766 2.090971 0.7872328 511 Biotin carboxyl carrier protein [Lipid metabolism] I acetyl-CoA carboxylase, biotin carboxyl carrier protein - FALSE FALSE 8 TRUE 3.5439260 3.3529399 3.5451250 1.082041 0.9479597 N 0.9181581 0.9748012 8.25000000 0.15996687 0.9727547 0.2554779 0.87177854 TRUE 0.5 0.87177854 TRUE 0.52770626 0.9748012 0.8543847 0.9593567 187272 4479 2155853 2155854 1 20 Same + + 167.0303446 439.005453105 0 9.692076e+02 2.0 1.506766 2.090971 0.7872328 511 Biotin carboxyl carrier protein [Lipid metabolism] I acetyl-CoA carboxylase, biotin carboxyl carrier protein 1.411637 1.921954 0.6913565 439 Biotin carboxylase [Lipid metabolism] I acetyl-CoA carboxylase, biotin carboxylase I FALSE FALSE 9 TRUE 4.6873265 3.9213053 4.0955202 1.082041 3.2284294 Y 2.5510465 0.9971362 19.42241379 0.79645330 0.9969729 0.8757887 0.99922464 TRUE 0.5 0.99922464 TRUE 0.97322386 0.9971362 0.9028087 0.9953151 187272 4479 2155854 2155855 1 48 Same + + 0.0000000 -9.420754499 0 -9.907410e+00 NA 1.411637 1.921954 0.6913565 439 Biotin carboxylase [Lipid metabolism] I acetyl-CoA carboxylase, biotin carboxylase 1.804448 2.534069 0.9176561 - - - YfaZ family protein FALSE FALSE 10 TRUE 0.6028627 0.2896685 0.3989868 1.082041 0.9952947 U 0.8785504 0.5786890 24.56896552 0.56551060 0.2326646 0.7010757 0.28297162 FALSE 0.5 0.28297162 FALSE 0.17001025 0.5786890 0.1359772 0.4559605 187272 4479 2155857 2155858 1 4 Same + + 6.9821276 -0.605236355 0 6.647082e+01 192.4 1.468957 2.059306 0.7613444 702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] MG NAD-dependent epimerase/dehydratase 1.568257 2.177877 0.7931766 617 tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis] J metal dependent phosphohydrolase - FALSE FALSE 11 TRUE 1.4170584 2.2023456 0.4506682 1.082041 0.9479597 N 0.9181581 0.8040960 14.00000000 0.47070846 0.7432189 0.6157547 0.72020245 TRUE 0.5 0.72020245 TRUE 0.48557251 0.8040960 0.5148892 0.7146516 187272 4479 2155859 2155860 1 105 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 2.075308 2.971789 0.9675279 - - - hypothetical protein 1.463550 1.987797 0.7059472 667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion] C aldo/keto reductase TRUE FALSE 11 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 31.42241379 0.25106430 0.4896175 0.3765832 0.24333526 FALSE 0.5 0.24333526 FALSE 0.11905343 0.6737417 0.2873109 0.5575311 187272 4479 2155860 2155861 1 34 Same - - 3.7376696 -27.160560673 0 -4.161064e+01 192.4 1.463550 1.987797 0.7059472 667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion] C aldo/keto reductase 1.763284 2.436888 0.8556662 220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] R tRNA (guanine-N(7)-)-methyltransferase TRUE FALSE 10 TRUE 1.0641105 0.2873100 0.4370730 1.082041 0.9479597 U 0.8785504 0.6210923 22.29310345 0.63983060 0.3570089 0.7619675 0.49656476 FALSE 0.5 0.49656476 FALSE 0.31029444 0.6210923 0.2020756 0.5000444 187272 4479 2155861 2155862 1 2 Same - - 3.8654526 2.465075198 0 5.719161e+00 192.4 1.763284 2.436888 0.8556662 220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] R tRNA (guanine-N(7)-)-methyltransferase 1.553238 2.136971 0.7703999 2022 Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] F thiazole biosynthesis family protein TRUE FALSE 9 TRUE 1.0843401 1.5978387 1.6892221 1.082041 0.9479597 U 0.8785504 0.8027923 12.56896552 0.14363233 0.7410903 0.2320850 0.32436141 FALSE 0.5 0.32436141 FALSE 0.14988759 0.8027923 0.5124874 0.7129652 187272 4479 2155862 2155863 1 58 Same - - 122.7471967 329.135337376 0 6.046925e+02 192.4 1.553238 2.136971 0.7703999 2022 Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] F thiazole biosynthesis family protein 1.554956 2.111821 0.8630640 2104 Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism] H thiamine biosynthesis protein ThiS - TRUE FALSE 8 TRUE 4.3511108 3.6867000 3.9475043 1.082041 0.9479597 N 0.9181581 0.9856710 26.15517241 0.51468481 0.9846782 0.6564748 0.98553983 TRUE 0.5 0.98553983 TRUE 0.88398870 0.9856710 0.8778258 0.9767296 187272 4479 2155863 1386878 1 843 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 1.554956 2.111821 0.8630640 2104 Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism] H thiamine biosynthesis protein ThiS NA NA NA TRUE FALSE 7 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 40.10344828 0.08988330 0.4896175 0.1510752 0.08654286 FALSE 0.5 0.08654286 FALSE 0.03828937 0.6737417 0.2873109 0.5575311 187272 4479 1386878 2155864 1 171 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA NA NA NA 3.063233 4.390181 1.0494208 - - - hypothetical protein TRUE FALSE 6 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 35.61206897 0.12139464 0.4896175 0.1993405 0.11703369 FALSE 0.5 0.11703369 FALSE 0.05276147 0.6737417 0.2873109 0.5575311 187272 4479 2155864 2155865 1 0 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 3.063233 4.390181 1.0494208 - - - hypothetical protein 1.801225 2.450108 0.7352427 - - - hypothetical protein TRUE FALSE 5 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 8.25000000 0.15996687 0.4896175 0.2554779 0.15446387 FALSE 0.5 0.15446387 FALSE 0.07129565 0.6737417 0.2873109 0.5575311 187272 4479 2155865 2155866 1 3 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 1.801225 2.450108 0.7352427 - - - hypothetical protein 1.786855 2.515760 0.9083711 - - - hypothetical protein TRUE FALSE 4 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 13.23275862 0.23027279 0.4896175 0.3502584 0.22299324 FALSE 0.5 0.22299324 FALSE 0.10762321 0.6737417 0.2873109 0.5575311 187272 4479 2155866 2155867 1 99 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 1.786855 2.515760 0.9083711 - - - hypothetical protein 2.345150 3.299045 0.9763439 - - - hypothetical protein TRUE FALSE 3 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 30.91379310 0.28345064 0.4896175 0.4161639 0.27509080 FALSE 0.5 0.27509080 FALSE 0.13753814 0.6737417 0.2873109 0.5575311 187272 4479 2155867 2155868 1 21 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 2.345150 3.299045 0.9763439 - - - hypothetical protein 2.176101 2.992956 0.9538468 - - - hypothetical protein TRUE FALSE 2 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 19.66379310 0.78143991 0.4896175 0.8656399 0.77426304 TRUE 0.5 0.77426304 TRUE 0.59039456 0.6737417 0.2873109 0.5575311 187272 4479 2155868 2155869 1 -3 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 2.176101 2.992956 0.9538468 - - - hypothetical protein 2.367727 3.287609 0.9842397 - - - hypothetical protein TRUE FALSE 1 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 4.87068966 0.71360060 0.4896175 0.8178434 0.70503692 TRUE 0.5 0.70503692 TRUE 0.50111387 0.6737417 0.2873109 0.5575311 187272 4479 2155869 2155870 1 -3 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 2.367727 3.287609 0.9842397 - - - hypothetical protein 1.641038 2.289338 0.8199415 - - - Rhs element Vgr protein TRUE FALSE 0 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 4.87068966 0.71360060 0.4896175 0.8178434 0.70503692 TRUE 0.5 0.70503692 TRUE 0.50111387 0.6737417 0.2873109 0.5575311 187272 4479 2155870 1386886 1 48 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 1.641038 2.289338 0.8199415 - - - Rhs element Vgr protein NA NA NA TRUE FALSE -1 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 24.56896552 0.56551060 0.4896175 0.7010757 0.55527847 TRUE 0.5 0.55527847 TRUE 0.34413452 0.6737417 0.2873109 0.5575311 187272 4479 2155871 2155872 1 35 Same + + 40.8994860 109.200549840 0 2.320705e+02 NA 1.871115 2.623285 0.9127503 3516 Uncharacterized protein conserved in bacteria [Function unknown] S Uncharacterised conserved protein UCP028301 1.560950 2.133701 0.7598971 3517 Uncharacterized protein conserved in bacteria [Function unknown] S protein of unknown function DUF877 TRUE TRUE -1 TRUE 3.1935207 2.9915170 2.9868967 1.082041 0.9952947 U 0.8785504 0.9610991 22.46551724 0.63064880 0.9573402 0.7547057 0.97456592 TRUE 0.5 0.97456592 TRUE 0.88961069 0.9610991 0.8251692 0.9377924 187272 4479 2155872 2155873 1 7 Same + + 9.4013171 48.494450359 0 8.331460e+01 NA 1.560950 2.133701 0.7598971 3517 Uncharacterized protein conserved in bacteria [Function unknown] S protein of unknown function DUF877 1.884983 2.659562 0.9785304 3518 Uncharacterized protein conserved in bacteria [Function unknown] S protein of unknown function DUF1316 TRUE TRUE 0 TRUE 1.6612588 2.3030759 2.4463315 1.082041 0.9952947 U 0.8785504 0.8966499 15.56896552 0.74884036 0.8785169 0.8430772 0.95567618 TRUE 0.5 0.95567618 TRUE 0.87039605 0.8966499 0.6925415 0.8411131 187272 4479 2155873 2155874 1 20 Same + + 9.4013171 44.666136237 0 8.373345e+01 NA 1.884983 2.659562 0.9785304 3518 Uncharacterized protein conserved in bacteria [Function unknown] S protein of unknown function DUF1316 1.989161 2.783640 0.9162250 3519 Uncharacterized protein conserved in bacteria [Function unknown] S protein of unknown function DUF879 TRUE TRUE 1 TRUE 1.6612588 2.3093557 2.4112832 1.082041 0.9952947 U 0.8785504 0.8958903 19.42241379 0.79645330 0.8775204 0.8757887 0.96555796 TRUE 0.5 0.96555796 TRUE 0.89744787 0.8958903 0.6910240 0.8400182 187272 4479 2155874 2155875 1 -3 Same + + 35.2713949 109.439516864 0 1.974314e+02 NA 1.989161 2.783640 0.9162250 3519 Uncharacterized protein conserved in bacteria [Function unknown] S protein of unknown function DUF879 2.002257 2.818550 0.9336516 3520 Uncharacterized protein conserved in bacteria [Function unknown] S protein of unknown function DUF1305 TRUE TRUE 2 TRUE 2.9927346 2.8754139 2.9897048 1.082041 0.9952947 U 0.8785504 0.9561461 4.87068966 0.71360060 0.9516595 0.8178434 0.98002063 TRUE 0.5 0.98002063 TRUE 0.91635111 0.9561461 0.8146987 0.9300878 187272 4479 2155875 2155876 1 5 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA 2.002257 2.818550 0.9336516 3520 Uncharacterized protein conserved in bacteria [Function unknown] S protein of unknown function DUF1305 1.946346 2.767934 0.9330348 - - - FHA domain containing protein TRUE TRUE 3 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 14.70689655 0.64829100 0.4896175 0.7685965 0.63876305 TRUE 0.5 0.63876305 TRUE 0.42630446 0.6737417 0.2873109 0.5575311 187272 4479 2155876 2155877 1 -3 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA 1.946346 2.767934 0.9330348 - - - FHA domain containing protein 1.814908 2.545547 0.9110989 3521 Uncharacterized protein conserved in bacteria [Function unknown] S hypothetical protein TRUE TRUE 4 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 4.87068966 0.71360060 0.4896175 0.8178434 0.70503692 TRUE 0.5 0.70503692 TRUE 0.50111387 0.6737417 0.2873109 0.5575311 187272 4479 2155877 2155878 1 0 Same + + 4.3932776 31.508755874 0 3.898478e+01 NA 1.814908 2.545547 0.9110989 3521 Uncharacterized protein conserved in bacteria [Function unknown] S hypothetical protein 2.005936 2.793276 0.9204809 3522 Uncharacterized protein conserved in bacteria [Function unknown] S protein of unknown function DUF876 TRUE TRUE 5 TRUE 1.1482729 2.0066861 2.2797498 1.082041 0.9952947 U 0.8785504 0.8567281 8.25000000 0.15996687 0.8237433 0.2554779 0.47089366 FALSE 0.5 0.47089366 FALSE 0.23259780 0.8567281 0.6141462 0.7848854 187272 4479 2155878 2155879 1 3 Same + + 8.2889868 36.895363788 0 4.237228e+01 NA 2.005936 2.793276 0.9204809 3522 Uncharacterized protein conserved in bacteria [Function unknown] S protein of unknown function DUF876 1.781228 2.491597 0.8809215 3455 Uncharacterized protein conserved in bacteria [Function unknown] S hypothetical protein TRUE TRUE 6 TRUE 1.5187688 2.0314271 2.3402091 1.082041 0.9952947 U 0.8785504 0.8769378 13.23275862 0.23027279 0.8520947 0.3502584 0.63282475 TRUE 0.5 0.63282475 TRUE 0.36068980 0.8769378 0.6534865 0.8130173 187272 4479 2155879 2155880 1 -3 Same + + 1.3424917 -4.227466953 0 -4.890470e+00 NA 1.781228 2.491597 0.8809215 3455 Uncharacterized protein conserved in bacteria [Function unknown] S hypothetical protein 2.001961 2.812264 0.9334124 2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] T sigma54 specific transcriptional regulator, Fis family TRUE TRUE 7 TRUE 0.7711093 0.3114884 0.3898342 1.082041 0.9952947 U 0.8785504 0.5963062 4.87068966 0.71360060 0.2864728 0.8178434 0.50008982 TRUE 0.5 0.50008982 TRUE 0.32697819 0.5963062 0.1631711 0.4740454 187272 4479 2155880 2155881 1 -3 Same + + 1.3424917 17.376537092 0 1.991463e+01 NA 2.001961 2.812264 0.9334124 2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] T sigma54 specific transcriptional regulator, Fis family 2.051513 2.891513 0.9861038 - - - hypothetical protein TRUE TRUE 8 TRUE 0.7711093 1.8188362 2.0482906 1.082041 0.9952947 U 0.8785504 0.8166077 4.87068966 0.71360060 0.7633016 0.8178434 0.88931890 TRUE 0.5 0.88931890 TRUE 0.74374764 0.8166077 0.5380769 0.7309646 187272 4479 2155881 2155882 1 -12 Same + + 1.3424917 44.264817049 0 4.680291e+01 NA 2.051513 2.891513 0.9861038 - - - hypothetical protein 2.035287 2.874141 0.9393875 - - - ImpA domain protein TRUE TRUE 9 TRUE 0.7711093 2.0640807 2.4043256 1.082041 0.9952947 U 0.8785504 0.8454419 0.87931034 0.96629914 0.8073204 0.9810128 0.99174496 TRUE 0.5 0.99174496 TRUE 0.97657320 0.8454419 0.5924781 0.7694627 187272 4479 2155882 2155883 1 36 Same + + 5.5676914 33.111118377 0 3.585986e+01 NA 2.035287 2.874141 0.9393875 - - - ImpA domain protein 1.860064 2.627062 0.8924534 3523 Uncharacterized protein conserved in bacteria [Function unknown] S ImcF domain protein TRUE TRUE 10 TRUE 1.2708173 1.9840198 2.2930718 1.082041 0.9952947 U 0.8785504 0.8620111 22.67241379 0.62110800 0.8312829 0.7470843 0.88982952 TRUE 0.5 0.88982952 TRUE 0.73152251 0.8620111 0.6243626 0.7921749 187272 4479 2155883 2155884 1 243 Same + + 10.1728616 -14.964866015 0 -1.371960e+01 NA 1.860064 2.627062 0.8924534 3523 Uncharacterized protein conserved in bacteria [Function unknown] S ImcF domain protein 1.550097 2.107133 0.7684126 3157 Hemolysin-coregulated protein (uncharacterized) [Function unknown] S protein of unknown function DUF796 TRUE TRUE 11 TRUE 1.7517559 0.2852952 0.4101750 1.082041 0.9952947 U 0.8785504 0.6846773 37.22413793 0.10168419 0.5146031 0.1694146 0.10714693 FALSE 0.5 0.10714693 FALSE 0.04742509 0.6846773 0.3054735 0.5698751 187272 4479 2155884 2155885 1 87 Same + + 1.1956046 -6.781396434 0 -6.064588e+00 NA 1.550097 2.107133 0.7684126 3157 Hemolysin-coregulated protein (uncharacterized) [Function unknown] S protein of unknown function DUF796 1.697456 2.451339 0.9243176 4104 Uncharacterized conserved protein [Function unknown] S PAAR repeat-containing protein TRUE TRUE 12 TRUE 0.7462122 0.3036616 0.3923802 1.082041 0.9952947 U 0.8785504 0.5933604 29.63793103 0.35731679 0.2776981 0.5004597 0.17610861 FALSE 0.5 0.17610861 FALSE 0.09485658 0.5933604 0.1585978 0.4709989 187272 4479 2155885 2155886 1 143 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA 1.697456 2.451339 0.9243176 4104 Uncharacterized conserved protein [Function unknown] S PAAR repeat-containing protein 4.125076 5.646918 1.1161698 - - - hypothetical protein TRUE TRUE 13 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 34.44827586 0.14249457 0.4896175 0.2304351 0.13749426 FALSE 0.5 0.13749426 FALSE 0.06278455 0.6737417 0.2873109 0.5575311 187272 4479 2155886 2155887 1 85 Same + + 0.0000000 0.000000000 0 0.000000e+00 192.4 4.125076 5.646918 1.1161698 - - - hypothetical protein 1.603084 2.251085 0.8394129 253 Diaminopimelate epimerase [Amino acid transport and metabolism] E Diaminopimelate epimerase TRUE TRUE 14 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9479597 U 0.8785504 0.6699838 29.43965517 0.36828476 0.4808430 0.5123189 0.35063527 FALSE 0.5 0.35063527 FALSE 0.18564473 0.6699838 0.2811065 0.5533220 187272 4479 2155887 2155888 1 58 Same + + 14.8468784 133.185479544 0 2.275553e+02 NA 1.603084 2.251085 0.8394129 253 Diaminopimelate epimerase [Amino acid transport and metabolism] E Diaminopimelate epimerase 1.637203 2.253175 0.8471139 3159 Uncharacterized protein conserved in bacteria [Function unknown] S protein of unknown function DUF484 TRUE TRUE 15 TRUE 2.1491309 2.9731725 3.2093952 1.082041 0.9952947 U 0.8785504 0.9454574 26.15517241 0.51468481 0.9391975 0.6564748 0.94246747 TRUE 0.5 0.94246747 TRUE 0.80176851 0.9454574 0.7922643 0.9136215 187272 4479 2155888 2155889 1 7 Same + + 13.6823701 146.794498322 0 2.505695e+02 NA 1.637203 2.253175 0.8471139 3159 Uncharacterized protein conserved in bacteria [Function unknown] S protein of unknown function DUF484 1.745594 2.478735 0.8992088 4973 Site-specific recombinase XerC [DNA replication, recombination, and repair] L tyrosine recombinase XerC TRUE TRUE 16 TRUE 2.0513847 3.0659144 3.3543358 1.082041 0.9952947 U 0.8785504 0.9475893 15.56896552 0.74884036 0.9417055 0.8430772 0.97966012 TRUE 0.5 0.97966012 TRUE 0.92117101 0.9475893 0.7967214 0.9168884 187272 4479 2155889 2155890 1 61 Same + + 0.0000000 -12.777361963 0 -1.808831e+01 192.4 1.745594 2.478735 0.8992088 4973 Site-specific recombinase XerC [DNA replication, recombination, and repair] L tyrosine recombinase XerC 1.781552 2.470144 0.8494722 1309 Transcriptional regulator [Transcription] K transcriptional regulator, TetR family - TRUE TRUE 17 TRUE 0.6028627 0.2834637 0.4070243 1.082041 0.9479597 N 0.9181581 0.5776547 26.50862069 0.50575145 0.2294033 0.6483683 0.23349570 FALSE 0.5 0.23349570 FALSE 0.13709116 0.5776547 0.1343922 0.4549087 187272 4479 2155890 2155891 1 47 Same + + 8.6066142 13.400401342 0 3.418058e+01 192.4 1.781552 2.470144 0.8494722 1309 Transcriptional regulator [Transcription] K transcriptional regulator, TetR family 1.521159 2.090189 0.7687994 604 NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] CR Alcohol dehydrogenase GroES domain protein - TRUE TRUE 18 TRUE 1.5826266 1.9708723 1.9838573 1.082041 0.9479597 N 0.9181581 0.8644089 24.43103448 0.56946594 0.8346745 0.7044419 0.86975544 TRUE 0.5 0.86975544 TRUE 0.69161207 0.8644089 0.6290152 0.7954983 187272 4479 2155891 2155892 1 182 Same + + 0.0000000 -24.757278785 0 -2.851424e+01 192.4 1.521159 2.090189 0.7687994 604 NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] CR Alcohol dehydrogenase GroES domain protein 1.587125 2.156648 0.7999753 5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones] O 20S proteasome, A and B subunits - TRUE TRUE 19 TRUE 0.6028627 0.2840092 0.4304373 1.082041 0.9479597 N 0.9181581 0.5794445 35.99137931 0.11590497 0.2350393 0.1910926 0.03872163 FALSE 0.5 0.03872163 FALSE 0.02041058 0.5794445 0.1371357 0.4567295 187272 4479 2155892 2155893 1 15 Same + + 158.7653409 428.666066109 0 8.710262e+02 192.4 1.587125 2.156648 0.7999753 5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones] O 20S proteasome, A and B subunits 1.371348 1.849120 0.6466479 1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] O heat shock protein HslVU, ATPase subunit HslU O TRUE TRUE 20 TRUE 4.6281429 3.8768909 4.0677493 1.082041 0.9479597 Y 2.5510465 0.9931858 18.12068966 0.86657998 0.9927687 0.9212839 0.99887981 TRUE 0.5 0.99887981 TRUE 0.98210399 0.9931858 0.8941705 0.9888807 187272 4479 2155893 2155894 1 72 Same + + 6.7678821 38.479229953 0 3.834864e+01 NA 1.371348 1.849120 0.6466479 1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] O heat shock protein HslVU, ATPase subunit HslU 1.388382 1.893820 0.8218876 3536 Uncharacterized protein conserved in bacteria [Function unknown] S protein of unknown function DUF971 TRUE TRUE 21 TRUE 1.3949765 1.9972220 2.3629393 1.082041 0.9952947 U 0.8785504 0.8707841 27.95689655 0.44966389 0.8436012 0.5955215 0.81506177 TRUE 0.5 0.81506177 TRUE 0.59376739 0.8707841 0.6414333 0.8043803 187272 4479 2155894 2155895 1 4 Same + + 8.1562266 -5.207599548 0 8.580732e+01 NA 1.388382 1.893820 0.8218876 3536 Uncharacterized protein conserved in bacteria [Function unknown] S protein of unknown function DUF971 1.587322 2.190346 0.8015449 2226 Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] H ubiquinone/menaquinone biosynthesis methyltransferases TRUE TRUE 22 TRUE 1.5005459 2.3240608 0.3905005 1.082041 0.9952947 U 0.8785504 0.8144999 14.00000000 0.47070846 0.7599615 0.6157547 0.73791660 TRUE 0.5 0.73791660 TRUE 0.50488095 0.8144999 0.5341530 0.7282000 187272 4479 2155895 2155896 1 2 Same + + 13.3617415 131.516433071 0 1.488556e+02 NA 1.587322 2.190346 0.8015449 2226 Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] H ubiquinone/menaquinone biosynthesis methyltransferases 1.389297 1.943494 0.7507050 3165 Uncharacterized protein conserved in bacteria [Function unknown] S protein of unknown function DUF1243 TRUE TRUE 23 TRUE 2.0184678 2.6510550 3.1916086 1.082041 0.9952947 U 0.8785504 0.9350764 12.56896552 0.14363233 0.9268215 0.2320850 0.67992264 TRUE 0.5 0.67992264 TRUE 0.36048360 0.9350764 0.7706840 0.8978359 187272 4479 2155896 2155897 1 -3 Same + + 15.8350169 129.499753851 0 1.755241e+02 NA 1.389297 1.943494 0.7507050 3165 Uncharacterized protein conserved in bacteria [Function unknown] S protein of unknown function DUF1243 1.391775 1.930189 0.6728164 661 Predicted unusual protein kinase [General function prediction only] R 2-polyprenylphenol 6-hydroxylase TRUE TRUE 24 TRUE 2.2326214 2.7782905 3.1709520 1.082041 0.9952947 U 0.8785504 0.9424988 4.87068966 0.71360060 0.9356981 0.8178434 0.97315961 TRUE 0.5 0.97315961 TRUE 0.90154147 0.9424988 0.7860931 0.9091021 187272 4479 2155899 2155900 1 75 Same + + 0.0000000 -0.379888266 0 -1.015700e+00 192.4 1.362443 1.881584 0.6793775 421 Spermidine synthase [Amino acid transport and metabolism] E spermidine synthase 1.670447 2.306845 0.7983902 5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms] T diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) - TRUE TRUE 25 TRUE 0.6028627 0.4078776 0.4702678 1.082041 0.9479597 N 0.9181581 0.5943122 28.32758621 0.43010811 0.2805428 0.5762646 0.22737720 FALSE 0.5 0.22737720 FALSE 0.12574840 0.5943122 0.1600743 0.4719823 187272 4479 2155900 2155901 1 32 Same + + 0.0000000 -0.379888266 0 -3.798883e-01 NA 1.670447 2.306845 0.7983902 5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms] T diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 1.455442 2.017622 0.8093153 1714 Predicted membrane protein/domain [Function unknown] S RDD domain containing protein TRUE TRUE 26 TRUE 0.6028627 0.4803990 0.4702678 1.082041 0.9952947 U 0.8785504 0.6022509 21.93965517 0.66111275 0.3039195 0.7785308 0.45997451 FALSE 0.5 0.45997451 FALSE 0.28900391 0.6022509 0.1724327 0.4802211 187272 4479 2155902 2155903 1 -3 Same - - 16.3168448 10.410430307 0 5.458245e+01 NA 1.552282 2.162955 0.7793448 390 ABC-type uncharacterized transport system, permease component [General function prediction only] R conserved hypothetical protein 245 1.661487 2.369486 0.8838859 1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] PH ABC transporter related FALSE TRUE 26 TRUE 2.2574198 2.1265045 1.9208701 1.082041 0.9952947 U 0.8785504 0.8972728 4.87068966 0.71360060 0.8793330 0.8178434 0.94780020 TRUE 0.5 0.94780020 TRUE 0.84951729 0.8972728 0.6937870 0.8420118 187272 4479 2155905 2155906 1 63 Same - - 62.4477233 85.304052502 0 2.682584e+02 192.4 1.408507 1.935052 0.6938974 4 Ammonia permease [Inorganic ion transport and metabolism] P ammonium transporter 1.645480 2.179266 0.8553001 347 Nitrogen regulatory protein PII [Amino acid transport and metabolism] E nitrogen regulatory protein P-II - FALSE TRUE 25 TRUE 3.6731296 3.1391658 2.7985000 1.082041 0.9479597 N 0.9181581 0.9675369 26.79310345 0.49794771 0.9646369 0.6412189 0.96435581 TRUE 0.5 0.96435581 TRUE 0.83773704 0.9675369 0.8388499 0.9478781 187272 4479 2155907 2155908 1 64 Same + + 5.1125465 -6.639313447 0 7.554754e+00 NA 1.571169 2.103949 0.8247073 2960 Uncharacterized protein conserved in bacteria [Function unknown] S protein of unknown function DUF526 1.777327 2.525959 0.8570123 606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] O Mg chelatase, subunit ChlI TRUE TRUE 25 TRUE 1.2309047 1.6332218 0.3919227 1.082041 0.9952947 U 0.8785504 0.7499635 26.90517241 0.49457801 0.6486088 0.6381120 0.64364977 TRUE 0.5 0.64364977 TRUE 0.41210178 0.7499635 0.4173662 0.6466642 187272 4479 2155909 2155910 1 169 Same - - 0.0000000 -1.598084214 0 -2.967989e+00 192.4 1.331423 1.806808 0.6970288 3245 Cytochrome c5 [Energy production and conversion] C putative cytochrome c 1.435660 1.931638 0.6196917 548 Acetylglutamate kinase [Amino acid transport and metabolism] E acetylglutamate kinase - FALSE TRUE 25 TRUE 0.6028627 0.3341756 0.4024117 1.082041 0.9479597 N 0.9181581 0.5822205 35.56034483 0.12218207 0.2437117 0.2005181 0.04292762 FALSE 0.5 0.04292762 FALSE 0.02240851 0.5822205 0.1413983 0.4595600 187272 4479 2155910 2155911 1 286 Same - - 0.0000000 -4.035546750 0 -1.267586e+01 NA 1.435660 1.931638 0.6196917 548 Acetylglutamate kinase [Amino acid transport and metabolism] E acetylglutamate kinase 1.529699 2.101733 0.9520309 - - - hypothetical protein FALSE TRUE 24 TRUE 0.6028627 0.2860545 0.3898625 1.082041 0.9952947 U 0.8785504 0.5776618 37.82758621 0.09683586 0.2294258 0.1619189 0.03093500 FALSE 0.5 0.03093500 FALSE 0.01637542 0.5776618 0.1344031 0.4549159 187272 4479 2155911 2155912 1 17 Same - - 0.0000000 -0.919149015 0 -8.303392e+00 NA 1.529699 2.101733 0.9520309 - - - hypothetical protein 1.327267 1.818543 0.7126354 120 Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism] G ribose 5-phosphate isomerase FALSE TRUE 23 TRUE 0.6028627 0.2934556 0.4192522 1.082041 0.9952947 U 0.8785504 0.5805581 18.65517241 0.84470488 0.2385280 0.9074196 0.63015774 TRUE 0.5 0.63015774 TRUE 0.46723186 0.5805581 0.1388445 0.4578640 187272 4479 2155913 2155914 1 38 Same + + 0.0000000 -0.739427933 0 -1.888540e+00 192.4 1.526947 2.068943 0.7056936 1171 Threonine dehydratase [Amino acid transport and metabolism] E threonine dehydratase, biosynthetic 1.777098 2.515988 0.8967822 - - - transcriptional regulator, TetR family TRUE TRUE 23 TRUE 0.6028627 0.3582099 0.4422810 1.082041 0.9479597 U 0.8785504 0.5843727 23.02586207 0.60784760 0.2503789 0.7363613 0.34111740 FALSE 0.5 0.34111740 FALSE 0.20776699 0.5843727 0.1447096 0.4617600 187272 4479 2155914 2155915 1 36 Same + + 4.0979075 0.648913926 0 4.746821e+00 NA 1.777098 2.515988 0.8967822 - - - transcriptional regulator, TetR family 1.779510 2.505088 0.9000863 1988 Predicted membrane-bound metal-dependent hydrolases [General function prediction only] R membrane-bound metal-dependent hydrolase TRUE TRUE 24 TRUE 1.1118862 1.5771573 1.5776463 1.082041 0.9952947 U 0.8785504 0.8005379 22.67241379 0.62110800 0.7373930 0.7470843 0.82152534 TRUE 0.5 0.82152534 TRUE 0.62892742 0.8005379 0.5083403 0.7100547 187272 4479 2155915 1386932 1 76 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA 1.779510 2.505088 0.9000863 1988 Predicted membrane-bound metal-dependent hydrolases [General function prediction only] R membrane-bound metal-dependent hydrolase NA NA NA TRUE TRUE 25 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 28.43103448 0.42449302 0.4896175 0.5706521 0.41437898 FALSE 0.5 0.41437898 FALSE 0.22919957 0.6737417 0.2873109 0.5575311 187272 4479 1386932 2155916 1 986 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA NA NA NA 1.642672 2.286812 0.8035462 4097 Predicted ferric reductase [Inorganic ion transport and metabolism] P oxidoreductase FAD/NAD(P)-binding domain protein TRUE TRUE 26 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 40.13793103 0.08986625 0.4896175 0.1510485 0.08652638 FALSE 0.5 0.08652638 FALSE 0.03828170 0.6737417 0.2873109 0.5575311 187272 4479 2155917 2155918 1 33 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 1.642648 2.297312 0.7930777 2814 Arabinose efflux permease [Carbohydrate transport and metabolism] G major facilitator superfamily MFS_1 1.808859 2.467778 0.8957170 - - - hypothetical protein FALSE TRUE 26 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 22.10344828 0.65092448 0.4896175 0.7706479 0.64142841 TRUE 0.5 0.64142841 TRUE 0.42913646 0.6737417 0.2873109 0.5575311 187272 4479 2155923 2155924 1 177 Same + + 0.0000000 -0.328925031 0 -7.707578e-01 NA 1.781235 2.576103 0.8595605 265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones] O peptidase S1 and S6, chymotrypsin/Hap 3.259651 4.523669 1.0872572 - - - PEP motif putative anchor-like protein TRUE TRUE 26 TRUE 0.6028627 0.4388763 0.4785160 1.082041 0.9952947 U 0.8785504 0.5988960 35.81896552 0.11833755 0.2941160 0.1947556 0.05296299 FALSE 0.5 0.05296299 FALSE 0.02624033 0.5988960 0.1672005 0.4767312 187272 4479 2155925 2155926 1 38 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 2.711354 3.787100 1.0186795 - - - hypothetical protein 1.433194 1.971284 0.6944308 836 Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] M mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase FALSE TRUE 26 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 23.02586207 0.60784760 0.4896175 0.7363613 0.59790358 TRUE 0.5 0.59790358 TRUE 0.38456727 0.6737417 0.2873109 0.5575311 187272 4479 2155926 2155927 1 54 Same - - 1.5074387 0.560600525 0 3.275524e-01 NA 1.433194 1.971284 0.6944308 836 Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] M mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 1.784978 2.489273 0.8402388 - - - hypothetical protein FALSE TRUE 25 TRUE 0.8162003 1.4029314 1.5272017 1.082041 0.9952947 U 0.8785504 0.7663230 25.39655172 0.53613397 0.6786103 0.6756071 0.70934006 TRUE 0.5 0.70934006 TRUE 0.48236670 0.7663230 0.4463694 0.6667793 187272 4479 2155927 2155928 1 -3 Same - - 8.2989812 4.532632578 0 2.168191e+01 NA 1.784978 2.489273 0.8402388 - - - hypothetical protein 1.632437 2.305000 0.8025715 - - - HPr kinase FALSE TRUE 24 TRUE 1.5240086 1.8324203 1.7821469 1.082041 0.9952947 U 0.8785504 0.8477377 4.87068966 0.71360060 0.8106965 0.8178434 0.91431350 TRUE 0.5 0.91431350 TRUE 0.78673730 0.8477377 0.5968684 0.7725835 187272 4479 2155928 2155929 1 4 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 1.632437 2.305000 0.8025715 - - - HPr kinase 2.509879 3.361100 1.0222256 - - - hypothetical protein FALSE TRUE 23 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 14.00000000 0.47070846 0.4896175 0.6157547 0.46037414 FALSE 0.5 0.46037414 FALSE 0.26390285 0.6737417 0.2873109 0.5575311 187272 4479 2155929 2155930 1 85 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 2.509879 3.361100 1.0222256 - - - hypothetical protein 1.683812 2.291645 0.7769599 - - - hypothetical protein FALSE TRUE 22 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 29.43965517 0.36828476 0.4896175 0.5123189 0.35867530 FALSE 0.5 0.35867530 FALSE 0.19029987 0.6737417 0.2873109 0.5575311 187272 4479 2155930 2155931 1 331 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 1.683812 2.291645 0.7769599 - - - hypothetical protein 2.081835 2.944193 0.9827454 2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] H Methyltransferase type 11 FALSE TRUE 21 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 38.53448276 0.09306791 0.4896175 0.1560561 0.08962077 FALSE 0.5 0.08962077 FALSE 0.03972578 0.6737417 0.2873109 0.5575311 187272 4479 2155934 2155935 1 137 Same + + 0.0000000 0.000000000 0 -2.958454e-01 NA 2.263979 3.130654 0.9536841 - - - PEP motif putative anchor-like protein 1.432344 1.980087 0.7081268 381 UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane] M UDP-N-acetylglucosamine 2-epimerase TRUE TRUE 21 TRUE 0.6028627 0.4953588 0.9003919 1.082041 0.9952947 U 0.8785504 0.6345231 34.04310345 0.15220585 0.3929280 0.2444313 0.10410482 FALSE 0.5 0.10410482 FALSE 0.04912970 0.6345231 0.2234784 0.5144113 187272 4479 2155935 2155936 1 13 Same + + 0.0000000 -3.590394719 0 -6.137153e+00 192.4 1.432344 1.980087 0.7081268 381 UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane] M UDP-N-acetylglucosamine 2-epimerase 1.494311 2.113902 0.7820900 - - - polysaccharide deacetylase TRUE TRUE 22 TRUE 0.6028627 0.3029039 0.3903859 1.082041 0.9479597 U 0.8785504 0.5751730 17.44827586 0.86972311 0.2215311 0.9232524 0.65514822 TRUE 0.5 0.65514822 TRUE 0.50070040 0.5751730 0.1305947 0.4523896 187272 4479 2155938 2155939 1 108 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA 2.005117 2.783503 0.9012316 - - - polysaccharide deacetylase 3.961588 5.519361 1.1630352 - - - hypothetical protein TRUE TRUE 23 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 31.69827586 0.23478983 0.4896175 0.3560404 0.22740967 FALSE 0.5 0.22740967 FALSE 0.11007842 0.6737417 0.2873109 0.5575311 187272 4479 2155940 2155941 1 139 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 6.897006 9.533873 1.1385965 - - - hypothetical protein 5.857168 8.004328 1.1588043 463 Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] M glycosyl transferase, family 2 FALSE TRUE 23 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 34.15517241 0.14940012 0.4896175 0.2404076 0.14419823 FALSE 0.5 0.14419823 FALSE 0.06612509 0.6737417 0.2873109 0.5575311 187272 4479 2155941 2155942 1 287 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 5.857168 8.004328 1.1588043 463 Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] M glycosyl transferase, family 2 1.893368 2.606926 0.8447748 3464 Transposase and inactivated derivatives [DNA replication, recombination, and repair] L transposase, IS204/IS1001/IS1096/IS1165 family protein - FALSE TRUE 22 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 N 0.9181581 0.6765544 37.86206897 0.09660556 0.4961209 0.1615615 0.09525983 FALSE 0.5 0.09525983 FALSE 0.04223418 0.6765544 0.2919669 0.5606923 187272 4479 2155942 1386960 1 65 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 1.893368 2.606926 0.8447748 3464 Transposase and inactivated derivatives [DNA replication, recombination, and repair] L transposase, IS204/IS1001/IS1096/IS1165 family protein NA NA NA FALSE TRUE 21 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 27.02586207 0.49069922 0.4896175 0.6345207 0.48032429 FALSE 0.5 0.48032429 FALSE 0.27975283 0.6737417 0.2873109 0.5575311 187272 4479 2155943 2155944 1 6 Same + + 0.0000000 -0.845986385 0 -1.141832e+00 NA 4.018729 5.495714 1.1409762 3307 Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane] M O-antigen polymerase 2.590807 3.698901 1.0796149 - - - hypothetical protein TRUE TRUE 21 TRUE 0.6028627 0.3989660 0.4286292 1.082041 0.9952947 U 0.8785504 0.5914186 15.20689655 0.70828963 0.2718661 0.8139615 0.47549874 FALSE 0.5 0.47549874 FALSE 0.30910006 0.5914186 0.1555890 0.4689957 187272 4479 2155944 2155945 1 1 Same + + 0.0000000 -0.845986385 0 -8.459864e-01 NA 2.590807 3.698901 1.0796149 - - - hypothetical protein 2.447293 3.422681 1.0172861 - - - hypothetical protein TRUE TRUE 22 TRUE 0.6028627 0.4251958 0.4286292 1.082041 0.9952947 U 0.8785504 0.5939342 10.62931034 0.06473109 0.2794139 0.1108858 0.02613587 FALSE 0.5 0.02613587 FALSE 0.01296263 0.5939342 0.1594877 0.4715915 187272 4479 2155945 2155946 1 0 Same + + 0.0000000 0.560600525 0 5.606005e-01 NA 2.447293 3.422681 1.0172861 - - - hypothetical protein 2.330328 3.215910 0.9927593 2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] V ABC transporter related TRUE TRUE 23 TRUE 0.6028627 1.4232985 1.5272017 1.082041 0.9952947 U 0.8785504 0.7523204 8.25000000 0.15996687 0.6530115 0.2554779 0.26382701 FALSE 0.5 0.26382701 FALSE 0.12185171 0.7523204 0.4215202 0.6495398 187272 4479 2155946 2155947 1 25 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA 2.330328 3.215910 0.9927593 2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] V ABC transporter related 3.814220 5.197896 1.0847092 - - - hypothetical protein TRUE TRUE 24 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 20.49137931 0.74741058 0.4896175 0.8420708 0.73948880 TRUE 0.5 0.73948880 TRUE 0.54397825 0.6737417 0.2873109 0.5575311 187272 4479 2155947 2155948 1 57 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA 3.814220 5.197896 1.0847092 - - - hypothetical protein 7.088595 9.997324 1.1904544 - - - galactosyltransferase protein TRUE TRUE 25 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 25.97413793 0.51927891 0.4896175 0.6606118 0.50890351 TRUE 0.5 0.50890351 TRUE 0.30336462 0.6737417 0.2873109 0.5575311 187272 4479 2155948 2155949 1 1083 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA 7.088595 9.997324 1.1904544 - - - galactosyltransferase protein 2.106316 2.963195 0.9504450 318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] IQ AMP-dependent synthetase and ligase TRUE TRUE 26 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 40.15517241 0.08985830 0.4896175 0.1510360 0.08651869 FALSE 0.5 0.08651869 FALSE 0.03827812 0.6737417 0.2873109 0.5575311 187272 4479 2155949 2155950 1 -3 Same + + 15.5761772 10.416718122 0 5.007336e+01 192.4 2.106316 2.963195 0.9504450 318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] IQ AMP-dependent synthetase and ligase 1.909122 2.656628 0.8754991 19 Diaminopimelate decarboxylase [Amino acid transport and metabolism] E Orn/DAP/Arg decarboxylase 2 - TRUE TRUE 27 TRUE 2.2115267 2.0931829 1.9228174 1.082041 0.9479597 N 0.9181581 0.8939927 4.87068966 0.71360060 0.8750232 0.8178434 0.94578504 TRUE 0.5 0.94578504 TRUE 0.84555688 0.8939927 0.6872370 0.8372872 187272 4479 2155950 2155951 1 218 Same + + 0.0000000 -0.845986385 0 -1.523447e+00 192.4 1.909122 2.656628 0.8754991 19 Diaminopimelate decarboxylase [Amino acid transport and metabolism] E Orn/DAP/Arg decarboxylase 2 8.288945 11.529401 1.0603947 3919 Predicted ATP-grasp enzyme [General function prediction only] R protein of unknown function DUF201 TRUE TRUE 28 TRUE 0.6028627 0.3743873 0.4286292 1.082041 0.9479597 U 0.8785504 0.5849247 36.82758621 0.10563942 0.2520807 0.1754896 0.03828636 FALSE 0.5 0.03828636 FALSE 0.01972515 0.5849247 0.1455596 0.4623249 187272 4479 2155951 2155952 1 131 Same + + 0.0000000 0.560600525 0 -9.916096e-02 NA 8.288945 11.529401 1.0603947 3919 Predicted ATP-grasp enzyme [General function prediction only] R protein of unknown function DUF201 2.837660 3.964000 1.0554925 - - - esterase/lipase/thioesterase family TRUE TRUE 29 TRUE 0.6028627 0.5251905 1.5272017 1.082041 0.9952947 U 0.8785504 0.6801024 33.58620690 0.16449568 0.5042481 0.2618677 0.16684444 FALSE 0.5 0.16684444 FALSE 0.07708118 0.6801024 0.2978555 0.5646935 187272 4479 2155952 2155953 1 217 Same + + 0.0000000 -0.845986385 0 -8.459864e-01 NA 2.837660 3.964000 1.0554925 - - - esterase/lipase/thioesterase family 2.343679 3.228168 0.9980251 5421 Transposase [DNA replication, recombination, and repair] L transposase, IS4 family protein TRUE TRUE 30 TRUE 0.6028627 0.4251958 0.4286292 1.082041 0.9952947 U 0.8785504 0.5939342 36.80172414 0.10591804 0.2794139 0.1759163 0.04391872 FALSE 0.5 0.04391872 FALSE 0.02198474 0.5939342 0.1594877 0.4715915 187272 4479 2155954 2155955 1 -3 Same - - 0.0000000 -0.465363250 0 -5.313212e-01 NA 1.672627 2.269995 0.7574258 1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism] E amidinotransferase 1.921686 2.698608 0.9127797 318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] IQ amino acid adenylation domain - FALSE TRUE 30 TRUE 0.6028627 0.4586163 0.4608169 1.082041 0.9952947 N 0.9181581 0.6025611 4.87068966 0.71360060 0.3048205 0.8178434 0.52210781 TRUE 0.5 0.52210781 TRUE 0.34250377 0.6025611 0.1729171 0.4805444 187272 4479 2155955 2155956 1 158 Same - - 0.0000000 0.000000000 0 0.000000e+00 192.4 1.921686 2.698608 0.9127797 318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] IQ amino acid adenylation domain 1.867937 2.596653 0.8808661 463 Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] M glycosyl transferase, family 2 - FALSE TRUE 29 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9479597 N 0.9181581 0.6728131 35.17241379 0.12837502 0.4874582 0.2097330 0.12286431 FALSE 0.5 0.12286431 FALSE 0.05565117 0.6728131 0.2857759 0.5564894 187272 4479 2155956 2155957 1 14 Same - - 0.0000000 0.000000000 0 0.000000e+00 192.4 1.867937 2.596653 0.8808661 463 Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] M glycosyl transferase, family 2 2.049563 2.856103 0.9684703 - - - hypothetical protein FALSE TRUE 28 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9479597 U 0.8785504 0.6699838 17.79310345 0.87212466 0.4808430 0.9247526 0.86332800 TRUE 0.5 0.86332800 TRUE 0.72728613 0.6699838 0.2811065 0.5533220 187272 4479 2155959 2155960 1 -3 Same - - 8.1693760 0.366708754 0 6.767960e+00 NA 1.380640 1.944275 0.6716681 1541 Coenzyme F390 synthetase [Coenzyme metabolism] H CoA ligase 1.446954 2.029994 0.7232810 438 Glycosyltransferase [Cell envelope biogenesis, outer membrane] M glycosyl transferase, group 1 - FALSE TRUE 27 TRUE 1.5057340 1.6160928 1.4743813 1.082041 0.9952947 N 0.9181581 0.8238931 4.87068966 0.71360060 0.7747145 0.8178434 0.89548756 TRUE 0.5 0.89548756 TRUE 0.75407296 0.8238931 0.5516942 0.7405713 187272 4479 2155960 2155961 1 -10 Same - - 8.7229246 0.000000000 0 8.333640e+00 33.0 1.446954 2.029994 0.7232810 438 Glycosyltransferase [Cell envelope biogenesis, outer membrane] M glycosyl transferase, group 1 1.435557 1.979069 0.7106495 438 Glycosyltransferase [Cell envelope biogenesis, outer membrane] M glycosyl transferase, group 1 M FALSE TRUE 26 TRUE 1.6016565 1.6491636 0.9003919 1.082041 2.7823752 Y 2.5510465 0.9303307 1.12931034 0.96073492 0.9210719 0.9778221 0.99651002 TRUE 0.5 0.99651002 TRUE 0.98731924 0.9303307 0.7608862 0.8906864 187272 4479 2155961 2155962 1 7 Same - - 4.0023808 -0.355846616 0 3.555039e+00 192.4 1.435557 1.979069 0.7106495 438 Glycosyltransferase [Cell envelope biogenesis, outer membrane] M glycosyl transferase, group 1 1.351529 1.885908 0.6429726 367 Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] E asparagine synthase (glutamine-hydrolyzing) - FALSE TRUE 25 TRUE 1.1009861 1.5501986 0.4745363 1.082041 0.9479597 N 0.9181581 0.7378364 15.56896552 0.74884036 0.6255101 0.8430772 0.83277727 TRUE 0.5 0.83277727 TRUE 0.66167886 0.7378364 0.3961214 0.6319854 187272 4479 2155962 2155963 1 4 Same - - 9.0803286 1.478785890 0 8.853798e+00 192.4 1.351529 1.885908 0.6429726 367 Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] E asparagine synthase (glutamine-hydrolyzing) 1.521087 2.143646 0.7622309 438 Glycosyltransferase [Cell envelope biogenesis, outer membrane] M glycosyl transferase, group 1 - FALSE TRUE 24 TRUE 1.6319327 1.6609047 1.6520967 1.082041 0.9479597 N 0.9181581 0.8386071 14.00000000 0.47070846 0.7971599 0.6157547 0.77753122 TRUE 0.5 0.77753122 TRUE 0.55063940 0.8386071 0.5794595 0.7602209 187272 4479 2155963 2155964 1 -3 Same - - 4.0023808 0.753228720 0 9.219910e+00 NA 1.521087 2.143646 0.7622309 438 Glycosyltransferase [Cell envelope biogenesis, outer membrane] M glycosyl transferase, group 1 1.491482 2.090223 0.7255307 - - - eight transmembrane protein EpsH FALSE TRUE 23 TRUE 1.1009861 1.6683067 1.5971401 1.082041 0.9952947 U 0.8785504 0.8065071 4.87068966 0.71360060 0.7471374 0.8178434 0.88041217 TRUE 0.5 0.88041217 TRUE 0.72915267 0.8065071 0.5193383 0.7177772 187272 4479 2155964 2155965 1 -10 Same - - 5.7889010 -0.470552667 0 1.416481e+01 NA 1.491482 2.090223 0.7255307 - - - eight transmembrane protein EpsH 1.492375 2.118766 0.7411546 438 Glycosyltransferase [Cell envelope biogenesis, outer membrane] M glycosyl transferase, group 1 FALSE TRUE 22 TRUE 1.3049453 1.7467102 0.4599240 1.082041 0.9952947 U 0.8785504 0.7673841 1.12931034 0.96073492 0.6805122 0.9778221 0.98117361 TRUE 0.5 0.98117361 TRUE 0.95210563 0.7673841 0.4482646 0.6680968 187272 4479 2155965 2155966 1 5 Same - - 22.5866741 1.150325579 0 3.899281e+01 NA 1.492375 2.118766 0.7411546 438 Glycosyltransferase [Cell envelope biogenesis, outer membrane] M glycosyl transferase, group 1 1.348824 1.857727 0.6685602 - - - hypothetical protein FALSE TRUE 21 TRUE 2.6341653 2.0085823 1.6130066 1.082041 0.9952947 U 0.8785504 0.8981092 14.70689655 0.64829100 0.8804269 0.7685965 0.93137559 TRUE 0.5 0.93137559 TRUE 0.80803734 0.8981092 0.6954602 0.8432195 187272 4479 2155966 2155967 1 15 Same - - 30.2358754 7.060496674 0 6.218441e+01 NA 1.348824 1.857727 0.6685602 - - - hypothetical protein 1.560713 2.180740 0.7857852 - - - polysaccharide deacetylase FALSE TRUE 20 TRUE 2.8893781 2.1661821 1.8573409 1.082041 0.9952947 U 0.8785504 0.9179415 18.12068966 0.86657998 0.9057815 0.9212839 0.98423751 TRUE 0.5 0.98423751 TRUE 0.94753851 0.9179415 0.7355052 0.8722156 187272 4479 2155967 2155968 1 -10 Same - - 13.0310685 3.371950296 0 1.586587e+01 192.4 1.560713 2.180740 0.7857852 - - - polysaccharide deacetylase 1.560442 2.103492 0.7381121 3267 Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] U AAA ATPase FALSE TRUE 19 TRUE 1.9924233 1.7724404 1.7419227 1.082041 0.9479597 U 0.8785504 0.8641139 1.12931034 0.96073492 0.8342583 0.9778221 0.99194581 TRUE 0.5 0.99194581 TRUE 0.97640639 0.8641139 0.6284423 0.7950890 187272 4479 2155968 2155969 1 4 Same - - 3.6308804 0.560600525 0 1.019878e+01 NA 1.560442 2.103492 0.7381121 3267 Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] U AAA ATPase 1.649513 2.279086 0.7819843 - - - hypothetical protein FALSE TRUE 18 TRUE 1.0480024 1.6862743 1.5272017 1.082041 0.9952947 U 0.8785504 0.8009570 14.00000000 0.47070846 0.7380820 0.6157547 0.71478186 TRUE 0.5 0.71478186 TRUE 0.47979770 0.8009570 0.5091108 0.7105953 187272 4479 2155969 2155970 1 -10 Same - - 7.4810280 1.209514450 0 1.082618e+01 NA 1.649513 2.279086 0.7819843 - - - hypothetical protein 1.765751 2.483152 0.8492145 489 ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] D hypothetical protein FALSE TRUE 17 TRUE 1.4519917 1.6968895 1.6299310 1.082041 0.9952947 U 0.8785504 0.8303639 1.12931034 0.96073492 0.7846833 0.9778221 0.98890971 TRUE 0.5 0.98890971 TRUE 0.96935643 0.8303639 0.5638609 0.7491715 187272 4479 2155970 2155971 1 15 Same - - 27.2914364 11.751555003 0 6.771799e+01 NA 1.765751 2.483152 0.8492145 489 ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] D hypothetical protein 1.635025 2.271639 0.7967641 3206 Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane] M lipopolysaccharide biosynthesis - FALSE TRUE 16 TRUE 2.7802981 2.2124692 1.9502206 1.082041 0.9952947 N 0.9181581 0.9191499 18.12068966 0.86657998 0.9072910 0.9212839 0.98451154 TRUE 0.5 0.98451154 TRUE 0.94816622 0.9191499 0.7379683 0.8740050 187272 4479 2155972 2155973 1 180 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA 2.130705 2.922879 0.9072866 - - - type IV pilus assembly PilZ 2.675887 3.844963 1.0831623 3916 N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism] TQ hypothetical protein TRUE TRUE 16 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 35.88793103 0.11735186 0.4896175 0.1932729 0.11311745 FALSE 0.5 0.11311745 FALSE 0.05087203 0.6737417 0.2873109 0.5575311 187272 4479 2155973 2155974 1 45 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA 2.675887 3.844963 1.0831623 3916 N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism] TQ hypothetical protein 2.129649 2.921770 0.9447166 3916 N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism] TQ hypothetical protein TQ TRUE TRUE 17 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 Y 2.5510465 0.7801735 24.03448276 0.57987298 0.7030273 0.7132293 0.76566758 TRUE 0.5 0.76566758 TRUE 0.55158624 0.7801735 0.4712392 0.6840978 187272 4479 2155974 2155975 1 687 Same + + 0.0000000 0.503442111 0 2.075967e-01 NA 2.129649 2.921770 0.9447166 3916 N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism] TQ hypothetical protein 1.776664 2.443415 0.8698093 476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism] H UBA/THIF-type NAD/FAD binding protein - TRUE TRUE 18 TRUE 0.6028627 1.3960410 1.4827487 1.082041 0.9952947 N 0.9181581 0.7501657 39.93103448 0.08999315 0.6489876 0.1512474 0.15457937 FALSE 0.5 0.15457937 FALSE 0.06624530 0.7501657 0.4177223 0.6469106 187272 4479 2155975 2155976 1 -3 Same + + 0.0000000 -0.903144799 0 -1.199638e+00 NA 1.776664 2.443415 0.8698093 476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism] H UBA/THIF-type NAD/FAD binding protein 1.718099 2.412503 0.8502637 - - - hypothetical protein TRUE TRUE 19 TRUE 0.6028627 0.3952366 0.4203681 1.082041 0.9952947 U 0.8785504 0.5904529 4.87068966 0.71360060 0.2689513 0.8178434 0.47826027 FALSE 0.5 0.47826027 FALSE 0.31218851 0.5904529 0.1540942 0.4680009 187272 4479 2155976 2155977 1 29 Same + + 1.3603189 0.560600525 0 5.326721e+00 NA 1.718099 2.412503 0.8502637 - - - hypothetical protein 1.551683 2.169316 0.7993367 - - - hypothetical protein TRUE TRUE 20 TRUE 0.7825954 1.5881372 1.5272017 1.082041 0.9952947 U 0.8785504 0.7769348 21.36206897 0.69864746 0.6973958 0.8068598 0.84234666 TRUE 0.5 0.84234666 TRUE 0.66868312 0.7769348 0.4653978 0.6800242 187272 4479 2155977 2155978 1 0 Same + + 1.0599975 0.161000536 0 2.731045e+00 NA 1.551683 2.169316 0.7993367 - - - hypothetical protein 1.448115 2.013602 0.7104430 1033 Predicted exporters of the RND superfamily [General function prediction only] R exporter of the RND superfamily TRUE TRUE 21 TRUE 0.7126597 1.5200347 1.4619697 1.082041 0.9952947 U 0.8785504 0.7637255 8.25000000 0.15996687 0.6739327 0.2554779 0.28242830 FALSE 0.5 0.28242830 FALSE 0.13094979 0.7637255 0.4417378 0.6635612 187272 4479 2155978 2155979 1 371 Same + + 0.0000000 -0.845986385 0 -8.459864e-01 NA 1.448115 2.013602 0.7104430 1033 Predicted exporters of the RND superfamily [General function prediction only] R exporter of the RND superfamily 2.160574 2.947230 0.9299068 - - - hypothetical protein TRUE TRUE 22 TRUE 0.6028627 0.4251958 0.4286292 1.082041 0.9952947 U 0.8785504 0.5939342 38.86206897 0.09190967 0.2794139 0.1542473 0.03776383 FALSE 0.5 0.03776383 FALSE 0.01884316 0.5939342 0.1594877 0.4715915 187272 4479 2155980 2155981 1 9 Same - - 7.6488696 0.775960817 0 8.684216e+00 192.4 1.642432 2.242441 0.7806419 5010 Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] U Tetratricopeptide TPR_2 repeat protein 1.639362 2.244035 0.7620153 2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] T two component, sigma54 specific, transcriptional regulator, Fis family - FALSE TRUE 22 TRUE 1.4697262 1.6579577 1.5987158 1.082041 0.9479597 N 0.9181581 0.8272220 16.12931034 0.80191709 0.7798625 0.8794453 0.93481900 TRUE 0.5 0.93481900 TRUE 0.83632648 0.8272220 0.5579449 0.7449878 187272 4479 2155981 2155982 1 25 Same - - 28.0638036 20.328663834 0 6.125785e+01 192.4 1.639362 2.244035 0.7620153 2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] T two component, sigma54 specific, transcriptional regulator, Fis family 1.533100 2.121687 0.7225024 642 Signal transduction histidine kinase [Signal transduction mechanisms] T periplasmic sensor signal transduction histidine kinase T FALSE TRUE 21 TRUE 2.8177184 2.1582046 2.0996894 1.082041 0.9479597 Y 2.5510465 0.9517215 20.49137931 0.74741058 0.9465348 0.8420708 0.98126825 TRUE 0.5 0.98126825 TRUE 0.92450198 0.9517215 0.8053854 0.9232451 187272 4479 2155982 2155983 1 20 Same - - 11.6563500 1.414565528 0 3.134182e+01 192.4 1.533100 2.121687 0.7225024 642 Signal transduction histidine kinase [Signal transduction mechanisms] T periplasmic sensor signal transduction histidine kinase 1.547418 2.134110 0.7429952 2148 Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane] M Undecaprenyl-phosphate galactose phosphotransferase - FALSE TRUE 20 TRUE 1.9095413 1.9373170 1.6487837 1.082041 0.9479597 N 0.9181581 0.8661055 19.42241379 0.79645330 0.8370630 0.8757887 0.95261064 TRUE 0.5 0.95261064 TRUE 0.87061711 0.8661055 0.6323131 0.7978555 187272 4479 2155983 2155984 1 33 Same - - 10.6939465 6.341060523 0 4.196487e+00 192.4 1.547418 2.134110 0.7429952 2148 Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane] M Undecaprenyl-phosphate galactose phosphotransferase 1.754573 2.420859 0.8838133 1596 Periplasmic protein involved in polysaccharide export [Cell envelope biogenesis, outer membrane] M polysaccharide export protein M FALSE TRUE 19 TRUE 1.7961900 1.5676428 1.8383618 1.082041 0.9479597 Y 2.5510465 0.9056343 22.10344828 0.65092448 0.8901781 0.7706479 0.93794480 TRUE 0.5 0.93794480 TRUE 0.82072453 0.9056343 0.7105709 0.8541401 187272 4479 2155985 2155986 1 53 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA 1.849416 2.615419 0.8836717 - - - type IV pilus assembly PilZ 2.005101 2.860559 0.9587954 1434 Uncharacterized conserved protein [Function unknown] S protein of unknown function DUF218 TRUE TRUE 19 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 25.25000000 0.54135477 0.4896175 0.6801945 0.53102553 TRUE 0.5 0.53102553 TRUE 0.32241778 0.6737417 0.2873109 0.5575311 187272 4479 2155986 2155987 1 22 Same + + 0.0000000 -7.345296538 0 -1.527987e+01 NA 2.005101 2.860559 0.9587954 1434 Uncharacterized conserved protein [Function unknown] S protein of unknown function DUF218 1.738025 2.422169 0.8483667 1087 UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] M UDP-glucose 4-epimerase TRUE TRUE 20 TRUE 0.6028627 0.2842087 0.3934368 1.082041 0.9952947 U 0.8785504 0.5777482 19.88793103 0.76975306 0.2296987 0.8576351 0.49922608 FALSE 0.5 0.49922608 FALSE 0.34197143 0.5777482 0.1345355 0.4550038 187272 4479 2155988 2155989 1 437 Same - - 0.0000000 -0.492305511 0 -4.923055e-01 192.4 1.772142 2.441907 0.8341102 3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms] T diguanylate cyclase 1.490082 2.032193 0.7183627 1281 Disulfide bond chaperones of the HSP33 family [Posttranslational modification, protein turnover, chaperones] O Hsp33 protein - FALSE TRUE 20 TRUE 0.6028627 0.4633842 0.4557225 1.082041 0.9479597 N 0.9181581 0.5985545 39.19827586 0.09103391 0.2931121 0.1528776 0.03987199 FALSE 0.5 0.03987199 FALSE 0.01963718 0.5985545 0.1666688 0.4763767 187272 4479 2155989 2155990 1 27 Same - - 0.0000000 -12.284158259 0 -2.937296e+01 192.4 1.490082 2.032193 0.7183627 1281 Disulfide bond chaperones of the HSP33 family [Posttranslational modification, protein turnover, chaperones] O Hsp33 protein 1.278575 1.722059 0.5789091 64 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) [Translation, ribosomal structure and biogenesis] J glutamyl-tRNA(Gln) amidotransferase, B subunit - FALSE TRUE 19 TRUE 0.6028627 0.2842699 0.4064947 1.082041 0.9479597 N 0.9181581 0.5776935 20.96551724 0.72300539 0.2295259 0.8246661 0.43743678 FALSE 0.5 0.43743678 FALSE 0.28848775 0.5776935 0.1344516 0.4549481 187272 4479 2155990 2155991 1 67 Same - - 198.2562075 223.822759908 0 7.899740e+02 3.0 1.278575 1.722059 0.5789091 64 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) [Translation, ribosomal structure and biogenesis] J glutamyl-tRNA(Gln) amidotransferase, B subunit 1.301485 1.809577 0.6365870 154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] J glutamyl-tRNA(Gln) amidotransferase, A subunit J FALSE TRUE 18 TRUE 4.8557634 3.8264728 3.6773447 1.082041 3.2709203 Y 2.5510465 0.9968900 27.22413793 0.48364677 0.9967119 0.6279498 0.99649034 TRUE 0.5 0.99649034 TRUE 0.89634552 0.9968900 0.9022695 0.9949132 187272 4479 2155991 2155992 1 46 Same - - 192.1163822 317.114120318 0 9.540810e+02 3.0 1.301485 1.809577 0.6365870 154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] J glutamyl-tRNA(Gln) amidotransferase, A subunit 1.465441 1.993843 0.8875283 721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis] J glutamyl-tRNA(Gln) amidotransferase, C subunit J FALSE TRUE 17 TRUE 4.8375239 3.9149436 3.9237038 1.082041 3.2709203 Y 2.5510465 0.9971931 24.25000000 0.57434836 0.9970333 0.7085769 0.99779969 TRUE 0.5 0.99779969 TRUE 0.92620930 0.9971931 0.9029335 0.9954081 187272 4479 2155993 2155994 1 145 Same + + 91.6246075 273.951690340 0 5.143411e+02 192.4 1.549471 2.140648 0.7715780 1077 Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] D cell shape determining protein, MreB/Mrl family 1.716264 2.462921 0.8762752 1792 Cell shape-determining protein [Cell envelope biogenesis, outer membrane] M rod shape-determining protein MreC - TRUE TRUE 17 TRUE 4.0585913 3.6073658 3.8326940 1.082041 0.9479597 N 0.9181581 0.9828492 34.54310345 0.14040087 0.9816082 0.2273920 0.89709195 TRUE 0.5 0.89709195 TRUE 0.52604365 0.9828492 0.8717178 0.9721967 187272 4479 2155994 2155995 1 -3 Same + + 24.1060226 139.673605485 0 2.589227e+02 9.0 1.716264 2.462921 0.8762752 1792 Cell shape-determining protein [Cell envelope biogenesis, outer membrane] M rod shape-determining protein MreC 1.830493 2.597017 0.9451066 2891 Cell shape-determining protein [Cell envelope biogenesis, outer membrane] M Rod shape-determining protein MreD M TRUE TRUE 18 TRUE 2.6822483 3.1010012 3.2873251 1.082041 3.2297347 Y 2.5510465 0.9888498 4.87068966 0.71360060 0.9881155 0.8178434 0.99519604 TRUE 0.5 0.99519604 TRUE 0.95030597 0.9888498 0.8847257 0.9818554 187272 4479 2155995 2155996 1 9 Same + + 13.9312846 -26.918599066 0 7.527856e+01 192.4 1.830493 2.597017 0.9451066 2891 Cell shape-determining protein [Cell envelope biogenesis, outer membrane] M Rod shape-determining protein MreD 1.566837 2.180974 0.7674113 768 Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane] M Peptidoglycan glycosyltransferase M TRUE TRUE 19 TRUE 2.0746664 2.2430480 0.4362184 1.082041 0.9479597 Y 2.5510465 0.9014762 16.12931034 0.80191709 0.8848101 0.8794453 0.96884442 TRUE 0.5 0.96884442 TRUE 0.90518037 0.9014762 0.7022088 0.8480936 187272 4479 2155996 2155997 1 -13 Same + + 124.1235776 228.524871033 0 5.232964e+02 192.4 1.566837 2.180974 0.7674113 768 Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane] M Peptidoglycan glycosyltransferase 1.792110 2.509173 0.8586226 772 Bacterial cell division membrane protein [Cell division and chromosome partitioning] D rod shape-determining protein RodA - TRUE TRUE 20 TRUE 4.3737541 3.6134302 3.6969547 1.082041 0.9479597 N 0.9181581 0.9842446 0.67241379 0.97034030 0.9831284 0.9833200 0.99947572 TRUE 0.5 0.99947572 TRUE 0.99564193 0.9842446 0.8747361 0.9744361 187272 4479 2155997 2155998 1 25 Same + + 4.6858042 32.988636040 0 2.477721e+01 NA 1.792110 2.509173 0.8586226 772 Bacterial cell division membrane protein [Cell division and chromosome partitioning] D rod shape-determining protein RodA 1.530338 2.105979 0.7677621 2951 Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane] M lytic murein transglycosylase B - TRUE TRUE 21 TRUE 1.1878765 1.8652827 2.2908470 1.082041 0.9952947 N 0.9181581 0.8537264 20.49137931 0.74741058 0.8194178 0.8420708 0.93068486 TRUE 0.5 0.93068486 TRUE 0.82131512 0.8537264 0.6083624 0.7807637 187272 4479 2155998 2155999 1 -3 Same + + 2.1335088 24.551555186 0 2.320542e+01 NA 1.530338 2.105979 0.7677621 2951 Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane] M lytic murein transglycosylase B 1.646597 2.344035 0.8422595 797 Lipoproteins [Cell envelope biogenesis, outer membrane] M rare lipoprotein A M TRUE TRUE 22 TRUE 0.8691300 1.8513420 2.1861092 1.082041 0.9952947 Y 2.5510465 0.8936738 4.87068966 0.71360060 0.8746024 0.8178434 0.94558770 TRUE 0.5 0.94558770 TRUE 0.84517036 0.8936738 0.6866011 0.8368288 187272 4479 2155999 2156000 1 72 Same + + 17.5740668 57.160400563 0 9.629058e+01 NA 1.646597 2.344035 0.8422595 797 Lipoproteins [Cell envelope biogenesis, outer membrane] M rare lipoprotein A 1.605396 2.204156 0.7890316 1686 D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane] M Serine-type D-Ala-D-Ala carboxypeptidase M TRUE TRUE 23 TRUE 2.3366829 2.3987054 2.5346859 1.082041 0.9952947 Y 2.5510465 0.9541386 27.95689655 0.44966389 0.9493402 0.5955215 0.93869366 TRUE 0.5 0.93869366 TRUE 0.77747774 0.9541386 0.8104684 0.9269785 187272 4479 2156000 2156001 1 12 Same + + 9.6824253 -3.418732621 0 6.394874e+01 192.4 1.605396 2.204156 0.7890316 1686 D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane] M Serine-type D-Ala-D-Ala carboxypeptidase 1.603286 2.229913 0.8002539 115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism] EH aminotransferase, class IV - TRUE TRUE 24 TRUE 1.6938580 2.1701787 0.3906941 1.082041 0.9479597 N 0.9181581 0.8162282 17.12068966 0.86030624 0.7627016 0.9173371 0.95190945 TRUE 0.5 0.95190945 TRUE 0.87735253 0.8162282 0.5373699 0.7304664 187272 4479 2156001 2156002 1 2 Same + + 6.7114006 0.506022841 0 7.165357e+01 NA 1.603286 2.229913 0.8002539 115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism] EH aminotransferase, class IV 1.554300 2.117851 0.9232233 2921 Uncharacterized conserved protein [Function unknown] S protein of unknown function DUF493 TRUE TRUE 25 TRUE 1.3876808 2.2307787 1.4841506 1.082041 0.9952947 U 0.8785504 0.8494640 12.56896552 0.14363233 0.8132232 0.2320850 0.42205286 FALSE 0.5 0.42205286 FALSE 0.20113007 0.8494640 0.6001756 0.7749357 187272 4479 2156002 2156003 1 444 Same + + 19.4432499 92.261723074 0 1.539621e+02 NA 1.554300 2.117851 0.9232233 2921 Uncharacterized conserved protein [Function unknown] S protein of unknown function DUF493 1.427886 2.020100 0.7722755 321 Lipoate-protein ligase B [Coenzyme metabolism] H lipoate-protein ligase B TRUE TRUE 26 TRUE 2.4329707 2.6889079 2.8763811 1.082041 0.9952947 U 0.8785504 0.9399789 39.24137931 0.09094203 0.9327002 0.1527338 0.58096611 TRUE 0.5 0.58096611 TRUE 0.26278186 0.9399789 0.7808501 0.9052657 187272 4479 2156003 2156004 1 184 Same + + 0.0000000 -7.113546710 0 -1.175009e+01 NA 1.427886 2.020100 0.7722755 321 Lipoate-protein ligase B [Coenzyme metabolism] H lipoate-protein ligase B 1.889188 2.691961 0.9696413 2370 Hydrogenase/urease accessory protein [Posttranslational modification, protein turnover, chaperones] O HupE/UreJ protein - TRUE TRUE 27 TRUE 0.6028627 0.2875028 0.3931945 1.082041 0.9952947 N 0.9181581 0.5811742 36.07758621 0.11472845 0.2404527 0.1893163 0.03941009 FALSE 0.5 0.03941009 FALSE 0.02062609 0.5811742 0.1397906 0.4584922 187272 4479 2156004 2156005 1 11 Same + + 10.1544951 -10.105397972 0 9.738819e+00 NA 1.889188 2.691961 0.9696413 2370 Hydrogenase/urease accessory protein [Posttranslational modification, protein turnover, chaperones] O HupE/UreJ protein 1.898625 2.736007 0.9109781 829 Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones] O Urease accessory protein UreD O TRUE TRUE 28 TRUE 1.7488245 1.6772545 0.4013455 1.082041 0.9952947 Y 2.5510465 0.8659939 16.78448276 0.84564244 0.8369062 0.9080198 0.96565040 TRUE 0.5 0.96565040 TRUE 0.90396214 0.8659939 0.6320962 0.7977004 187272 4479 2156005 2156006 1 11 Same + + 30.9604241 107.768822929 0 2.640357e+02 12.0 1.898625 2.736007 0.9109781 829 Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones] O Urease accessory protein UreD 1.604889 2.183990 0.9299413 831 Urea amidohydrolase (urease) gamma subunit [Amino acid transport and metabolism] E urease, gamma subunit - TRUE TRUE 29 TRUE 2.9064257 3.1200347 2.9840908 1.082041 3.1454153 N 0.9181581 0.9807414 16.78448276 0.84564244 0.9793034 0.9080198 0.99615718 TRUE 0.5 0.99615718 TRUE 0.97279974 0.9807414 0.8671656 0.9688212 187272 4479 2156006 2156007 1 12 Same + + 48.4275275 131.899702438 0 4.411210e+02 3.0 1.604889 2.183990 0.9299413 831 Urea amidohydrolase (urease) gamma subunit [Amino acid transport and metabolism] E urease, gamma subunit 1.784025 2.434972 0.8833779 832 Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism] E urease, beta subunit E TRUE TRUE 30 TRUE 3.3988018 3.5171846 3.1975292 1.082041 3.2709203 Y 2.5510465 0.9927718 17.12068966 0.86030624 0.9923262 0.9173371 0.99874589 TRUE 0.5 0.99874589 TRUE 0.98096752 0.9927718 0.8932671 0.9882083 187272 4479 2156007 2156008 1 -3 Same + + 51.4720500 98.845942298 0 4.272418e+02 3.0 1.784025 2.434972 0.8833779 832 Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism] E urease, beta subunit 1.325780 1.788938 0.5950526 804 Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism] E urease, alpha subunit E TRUE TRUE 31 TRUE 3.4902239 3.4963578 2.9229166 1.082041 3.2709203 Y 2.5510465 0.9923623 4.87068966 0.71360060 0.9918881 0.8178434 0.99672845 TRUE 0.5 0.99672845 TRUE 0.95383008 0.9923623 0.8923738 0.9875435 187272 4479 2156008 2156009 1 691 Same + + 33.2584744 79.388120387 0 2.014435e+02 3.0 1.325780 1.788938 0.5950526 804 Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism] E urease, alpha subunit 1.719168 2.363358 0.8281498 2371 Urease accessory protein UreE [Posttranslational modification, protein turnover, chaperones] O UreE urease accessory domain protein - TRUE TRUE 32 TRUE 2.9753295 2.8906417 2.7615897 1.082041 3.2709203 N 0.9181581 0.9790426 39.94827586 0.08998023 0.9774387 0.1512272 0.81073953 TRUE 0.5 0.81073953 TRUE 0.38481047 0.9790426 0.8635033 0.9661072 187272 4479 2156009 2156010 1 -10 Same + + 41.3686012 142.891324352 0 3.588545e+02 12.0 1.719168 2.363358 0.8281498 2371 Urease accessory protein UreE [Posttranslational modification, protein turnover, chaperones] O UreE urease accessory domain protein 1.478266 2.054347 0.7265520 830 Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones] O Urease accessory protein UreF O TRUE TRUE 33 TRUE 3.2072340 3.3587106 3.3329089 1.082041 3.1454153 Y 2.5510465 0.9916695 1.12931034 0.96073492 0.9911462 0.9778221 0.99963505 TRUE 0.5 0.99963505 TRUE 0.99501812 0.9916695 0.8908634 0.9864196 187272 4479 2156010 2156011 1 332 Same + + 73.0669636 201.747817198 0 4.688018e+02 12.0 1.478266 2.054347 0.7265520 830 Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones] O Urease accessory protein UreF 1.560897 2.142981 0.7486484 378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] OK urease accessory protein UreG O TRUE TRUE 34 TRUE 3.8210402 3.5560809 3.6092311 1.082041 3.1454153 Y 2.5510465 0.9944353 38.56034483 0.09296439 0.9941021 0.1558946 0.94528171 TRUE 0.5 0.94528171 TRUE 0.47134960 0.9944353 0.8968993 0.9909124 187272 4479 2156011 2156012 1 194 Same + + 10.4710715 -12.791234751 0 4.781716e+01 NA 1.560897 2.142981 0.7486484 378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] OK urease accessory protein UreG 1.298738 1.781066 0.6147417 683 ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism] E branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative - TRUE TRUE 35 TRUE 1.7842558 2.0776273 0.4072026 1.082041 0.9952947 N 0.9181581 0.8193875 36.34482759 0.11125216 0.7676803 0.1840499 0.29260710 FALSE 0.5 0.29260710 FALSE 0.12959661 0.8193875 0.5432626 0.7346207 187272 4479 2156012 2156013 1 123 Same + + 18.2226239 90.826247339 0 1.808745e+02 NA 1.298738 1.781066 0.6147417 683 ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism] E branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative 1.426857 1.975571 0.6955841 559 Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism] E inner-membrane translocator E TRUE TRUE 36 TRUE 2.3696915 2.8177635 2.8628174 1.082041 0.9952947 Y 2.5510465 0.9649267 33.07758621 0.17949256 0.9616902 0.2827378 0.84595187 TRUE 0.5 0.84595187 TRUE 0.52232520 0.9649267 0.8332933 0.9437791 187272 4479 2156013 2156014 1 11 Same + + 18.2667580 94.339246196 0 1.917741e+02 81.0 1.426857 1.975571 0.6955841 559 Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism] E inner-membrane translocator 1.433754 1.988591 0.7052930 4177 ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism] E inner-membrane translocator E TRUE TRUE 37 TRUE 2.3733801 2.8577480 2.8900009 1.082041 1.8622503 Y 2.5510465 0.9747273 16.78448276 0.84564244 0.9726728 0.9080198 0.99489790 TRUE 0.5 0.99489790 TRUE 0.96979171 0.9747273 0.8542262 0.9592394 187272 4479 2156014 2156015 1 -3 Same + + 70.9393512 151.769559805 0 4.063860e+02 192.4 1.433754 1.988591 0.7052930 4177 ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism] E inner-membrane translocator 1.436746 1.939553 0.7164843 4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] R ABC transporter related TRUE TRUE 38 TRUE 3.8003989 3.4608484 3.3851146 1.082041 0.9479597 U 0.8785504 0.9767665 4.87068966 0.71360060 0.9749302 0.8178434 0.98978508 TRUE 0.5 0.98978508 TRUE 0.93800446 0.9767665 0.8586055 0.9624802 187272 4479 2156015 2156016 1 2 Same + + 64.5692141 142.112661033 0 4.096764e+02 68.0 1.436746 1.939553 0.7164843 4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] R ABC transporter related 1.562770 2.112669 0.7467674 410 ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] E ABC transporter related TRUE TRUE 39 TRUE 3.7034017 3.4667495 3.3207090 1.082041 2.0301283 U 0.8785504 0.9832519 12.56896552 0.14363233 0.9820474 0.2320850 0.90171787 TRUE 0.5 0.90171787 TRUE 0.53459434 0.9832519 0.8725885 0.9728426 187272 4479 2156016 2156017 1 165 Same + + 0.0000000 -10.319140531 0 -1.866316e+01 192.4 1.562770 2.112669 0.7467674 410 ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] E ABC transporter related 1.630091 2.220024 0.7840136 2223 Nitrate/nitrite transporter [Inorganic ion transport and metabolism] P major facilitator superfamily MFS_1 - TRUE TRUE 40 TRUE 0.6028627 0.2832999 0.4019387 1.082041 0.9479597 N 0.9181581 0.5772612 35.39655172 0.12473568 0.2281598 0.2043279 0.04042429 FALSE 0.5 0.04042429 FALSE 0.02153747 0.5772612 0.1337896 0.4545089 187272 4479 2156018 2156019 1 480 Same - - 0.0000000 0.000000000 0 0.000000e+00 192.4 1.504704 2.060052 0.7199924 2358 TRAP-type uncharacterized transport system, periplasmic component [General function prediction only] R TRAP transporter solute receptor, TAXI family 1.517354 2.081915 0.7410591 - - - Succinylglutamate desuccinylase/aspartoacylase FALSE TRUE 40 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9479597 U 0.8785504 0.6699838 39.31896552 0.09078745 0.4808430 0.1524918 0.08465448 FALSE 0.5 0.08465448 FALSE 0.03757788 0.6699838 0.2811065 0.5533220 187272 4479 2156019 2156020 1 20 Same - - 4.7963069 17.559200151 0 2.596643e+01 NA 1.517354 2.081915 0.7410591 - - - Succinylglutamate desuccinylase/aspartoacylase 1.490283 2.046217 0.7202768 2170 Uncharacterized conserved protein [Function unknown] S hypothetical protein FALSE TRUE 39 TRUE 1.2070682 1.8811491 2.0544084 1.082041 0.9952947 U 0.8785504 0.8446565 19.42241379 0.79645330 0.8061612 0.8757887 0.94210742 TRUE 0.5 0.94210742 TRUE 0.84970429 0.8446565 0.5909782 0.7683970 187272 4479 2156020 2156021 1 40 Same - - 0.0000000 0.180712258 0 -2.081135e-01 NA 1.490283 2.046217 0.7202768 2170 Uncharacterized conserved protein [Function unknown] S hypothetical protein 1.668118 2.312586 0.8490057 1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure an MJ Nucleotidyl transferase FALSE TRUE 38 TRUE 0.6028627 0.5121492 1.4647135 1.082041 0.9952947 U 0.8785504 0.6748158 23.25000000 0.60070849 0.4921075 0.7305246 0.59311200 TRUE 0.5 0.59311200 TRUE 0.37956357 0.6748158 0.2890877 0.5587372 187272 4479 2156021 2156022 1 -3 Same - - 42.5433837 142.089333079 0 2.727840e+02 NA 1.668118 2.312586 0.8490057 1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure an MJ Nucleotidyl transferase 1.417458 1.976923 0.7282094 3178 Predicted phosphotransferase related to Ser/Thr protein kinases [General function prediction only] R aminoglycoside phosphotransferase FALSE TRUE 37 TRUE 3.2347843 3.1583936 3.3176640 1.082041 0.9952947 U 0.8785504 0.9674027 4.87068966 0.71360060 0.9644858 0.8178434 0.98543696 TRUE 0.5 0.98543696 TRUE 0.92827689 0.9674027 0.8385638 0.9476670 187272 4479 2156023 2156024 1 21 Same + + 31.6547694 133.907732687 0 2.741005e+02 192.4 1.596600 2.229224 0.7613627 1452 Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane] M Organic solvent tolerance protein 1.510341 2.045172 0.7123967 760 Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones] O PpiC-type peptidyl-prolyl cis-trans isomerase - TRUE TRUE 37 TRUE 2.9321306 3.1639049 3.2212942 1.082041 0.9479597 N 0.9181581 0.9622696 19.66379310 0.78143991 0.9586741 0.8656399 0.98808700 TRUE 0.5 0.98808700 TRUE 0.94496323 0.9622696 0.8276506 0.9396201 187272 4479 2156024 2156025 1 -3 Same + + 33.3043553 168.250988375 0 2.967133e+02 192.4 1.510341 2.045172 0.7123967 760 Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones] O PpiC-type peptidyl-prolyl cis-trans isomerase 1.644798 2.313636 0.8216595 1995 Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism] H 4-hydroxythreonine-4-phosphate dehydrogenase - TRUE TRUE 38 TRUE 2.9796741 3.2138564 3.4691994 1.082041 0.9479597 N 0.9181581 0.9662025 4.87068966 0.71360060 0.9631325 0.8178434 0.98486948 TRUE 0.5 0.98486948 TRUE 0.92701751 0.9662025 0.8360075 0.9457809 187272 4479 2156026 2156027 1 17 Same - - 0.0000000 -5.204145471 0 -1.055218e+01 192.4 1.862250 2.577395 0.9726597 - - - thiamineS protein 1.658134 2.297281 0.8036620 2271 Sugar phosphate permease [Carbohydrate transport and metabolism] G major facilitator superfamily MFS_1 FALSE TRUE 38 TRUE 0.6028627 0.2889608 0.3904674 1.082041 0.9479597 U 0.8785504 0.5738251 18.65517241 0.84470488 0.2172266 0.9074196 0.60150926 TRUE 0.5 0.60150926 TRUE 0.44514311 0.5738251 0.1285350 0.4510238 187272 4479 2156027 2156028 1 64 Same - - 2.2246236 -2.541060117 0 -2.443170e+00 192.4 1.658134 2.297281 0.8036620 2271 Sugar phosphate permease [Carbohydrate transport and metabolism] G major facilitator superfamily MFS_1 1.624049 2.267420 0.8102526 3608 Predicted deacylase [General function prediction only] R Succinylglutamate desuccinylase/aspartoacylase FALSE TRUE 37 TRUE 0.8831683 0.3431610 0.3937226 1.082041 0.9479597 U 0.8785504 0.6061893 26.90517241 0.49457801 0.3152895 0.6381120 0.31062618 FALSE 0.5 0.31062618 FALSE 0.17543287 0.6061893 0.1785924 0.4843332 187272 4479 2156028 2156029 1 3 Same - - 0.0000000 -7.601132245 0 -1.104136e+01 192.4 1.624049 2.267420 0.8102526 3608 Predicted deacylase [General function prediction only] R Succinylglutamate desuccinylase/aspartoacylase 1.408938 1.940997 0.7583513 663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] R transferase hexapeptide repeat containing protein FALSE TRUE 36 TRUE 0.6028627 0.2883882 0.3938596 1.082041 0.9479597 U 0.8785504 0.5740219 13.23275862 0.23027279 0.2178562 0.3502584 0.07691823 FALSE 0.5 0.07691823 FALSE 0.04236818 0.5740219 0.1288355 0.4512231 187272 4479 2156029 2156030 1 63 Same - - 0.0000000 0.000000000 0 -1.736865e+00 192.4 1.408938 1.940997 0.7583513 663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] R transferase hexapeptide repeat containing protein 1.763032 2.499268 0.8634961 589 Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] T UspA domain protein FALSE TRUE 35 TRUE 0.6028627 0.3659413 0.9003919 1.082041 0.9479597 U 0.8785504 0.6185061 26.79310345 0.49794771 0.3499131 0.6412189 0.34804804 FALSE 0.5 0.34804804 FALSE 0.19668013 0.6185061 0.1979804 0.4973006 187272 4479 2156030 2156031 1 125 Same - - 0.0000000 0.000000000 0 -1.280659e-01 NA 1.763032 2.499268 0.8634961 589 Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] T UspA domain protein 1.862709 2.506702 0.8976820 - - - hypothetical protein FALSE TRUE 34 TRUE 0.6028627 0.5186226 0.9003919 1.082041 0.9952947 U 0.8785504 0.6366636 33.19827586 0.17583420 0.3985126 0.2776873 0.12384667 FALSE 0.5 0.12384667 FALSE 0.05892993 0.6366636 0.2269107 0.5167195 187272 4479 2156031 2156032 1 159 Same - - 0.0000000 0.000000000 0 -1.280659e-01 NA 1.862709 2.506702 0.8976820 - - - hypothetical protein 1.676268 2.279165 0.8327816 1309 Transcriptional regulator [Transcription] K transcriptional regulator, TetR family FALSE TRUE 33 TRUE 0.6028627 0.5186226 0.9003919 1.082041 0.9952947 U 0.8785504 0.6366636 35.22413793 0.12752057 0.3985126 0.2084665 0.08828735 FALSE 0.5 0.08828735 FALSE 0.04113466 0.6366636 0.2269107 0.5167195 187272 4479 2156032 2156033 1 128 Same - - 0.0000000 -8.943721447 0 -1.233530e+01 192.4 1.676268 2.279165 0.8327816 1309 Transcriptional regulator [Transcription] K transcriptional regulator, TetR family 1.695610 2.346333 0.8181148 19 Diaminopimelate decarboxylase [Amino acid transport and metabolism] E diaminopimelate decarboxylase - FALSE TRUE 32 TRUE 0.6028627 0.2865527 0.3967791 1.082041 0.9479597 N 0.9181581 0.5771935 33.42241379 0.16919577 0.2279454 0.2684561 0.05671729 FALSE 0.5 0.05671729 FALSE 0.03046929 0.5771935 0.1336858 0.4544400 187272 4479 2156033 2156034 1 24 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 1.695610 2.346333 0.8181148 19 Diaminopimelate decarboxylase [Amino acid transport and metabolism] E diaminopimelate decarboxylase 1.760619 2.389518 1.0810951 - - - hypothetical protein FALSE TRUE 31 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 20.25000000 0.75705864 0.4896175 0.8488344 0.74933796 TRUE 0.5 0.74933796 TRUE 0.55678891 0.6737417 0.2873109 0.5575311 187272 4479 2156036 2156037 1 578 Same - - 0.0000000 0.000000000 0 -2.958454e-01 192.4 1.472887 1.986535 0.7736274 1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones] O peptidylprolyl isomerase, FKBP-type 1.384852 1.908587 0.6670674 3381 Uncharacterized component of anaerobic dehydrogenases [General function prediction only] R cytoplasmic chaperone TorD family protein FALSE TRUE 30 TRUE 0.6028627 0.4953588 0.9003919 1.082041 0.9479597 U 0.8785504 0.6305611 39.60344828 0.09033098 0.3824912 0.1517768 0.05794397 FALSE 0.5 0.05794397 FALSE 0.02680471 0.6305611 0.2171408 0.5101524 187272 4479 2156037 2156038 1 342 Same - - 0.0000000 0.560600525 0 1.777438e-01 192.4 1.384852 1.908587 0.6670674 3381 Uncharacterized component of anaerobic dehydrogenases [General function prediction only] R cytoplasmic chaperone TorD family protein 1.348945 1.831969 0.6416874 5557 Polysulphide reductase [Energy production and conversion] C Polysulphide reductase, NrfD FALSE TRUE 29 TRUE 0.6028627 1.3926130 1.5272017 1.082041 0.9479597 U 0.8785504 0.7468326 38.65517241 0.09260309 0.6427172 0.1553306 0.15510889 FALSE 0.5 0.15510889 FALSE 0.06669913 0.7468326 0.4118608 0.6428558 187272 4479 2156038 2156039 1 15 Same - - 11.2537982 8.380080572 0 1.916134e+01 192.4 1.348945 1.831969 0.6416874 5557 Polysulphide reductase [Energy production and conversion] C Polysulphide reductase, NrfD 1.272617 1.736700 0.6241791 437 Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion] C 4Fe-4S ferredoxin, iron-sulfur binding domain protein C FALSE TRUE 28 TRUE 1.8752816 1.8070710 1.8860440 1.082041 0.9479597 Y 2.5510465 0.9170173 18.12068966 0.86657998 0.9046243 0.9212839 0.98402691 TRUE 0.5 0.98402691 TRUE 0.94705658 0.9170173 0.7336230 0.8708488 187272 4479 2156039 2156040 1 26 Same - - 19.4038872 0.560600525 0 2.154044e+01 192.4 1.272617 1.736700 0.6241791 437 Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion] C 4Fe-4S ferredoxin, iron-sulfur binding domain protein 1.343610 1.805865 0.5940719 243 Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion] C molybdopterin oxidoreductase C FALSE TRUE 27 TRUE 2.4292146 1.8307141 1.5272017 1.082041 0.9479597 Y 2.5510465 0.9257178 20.77586207 0.73352658 0.9154266 0.8322219 0.96752780 TRUE 0.5 0.96752780 TRUE 0.89270723 0.9257178 0.7514028 0.8837765 187272 4479 2156040 2156041 1 -3 Same - - 6.5681643 0.510590104 0 2.855415e+00 192.4 1.343610 1.805865 0.5940719 243 Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion] C molybdopterin oxidoreductase 1.764130 2.493596 0.8424767 1146 Ferredoxin [Energy production and conversion] C 4Fe-4S ferredoxin, iron-sulfur binding domain protein C FALSE TRUE 26 TRUE 1.3731866 1.5239195 1.4869607 1.082041 0.9479597 Y 2.5510465 0.8775218 4.87068966 0.71360060 0.8528945 0.8178434 0.93525860 TRUE 0.5 0.93525860 TRUE 0.82526100 0.8775218 0.6546337 0.8138402 187272 4479 2156042 2156043 1 -3 Same + + 8.6572995 2.890371758 0 1.290799e+01 192.4 1.878012 2.606093 0.8853270 3221 ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism] P phosphonate ABC transporter, periplasmic phosphonate-binding protein 1.830309 2.529244 0.8395854 642 Signal transduction histidine kinase [Signal transduction mechanisms] T periplasmic sensor signal transduction histidine kinase - TRUE TRUE 26 TRUE 1.5907598 1.7403643 1.7205491 1.082041 0.9479597 N 0.9181581 0.8434259 4.87068966 0.71360060 0.8043406 0.8178434 0.91105486 TRUE 0.5 0.91105486 TRUE 0.78095511 0.8434259 0.5886300 0.7667291 187272 4479 2156043 2156044 1 -3 Same + + 5.8008293 0.000000000 0 7.161148e+00 192.4 1.830309 2.529244 0.8395854 642 Signal transduction histidine kinase [Signal transduction mechanisms] T periplasmic sensor signal transduction histidine kinase 1.796318 2.443807 0.8382780 2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] T two component, sigma54 specific, transcriptional regulator, Fis family T TRUE TRUE 27 TRUE 1.3072487 1.6217724 0.9003919 1.082041 0.9479597 Y 2.5510465 0.8585596 4.87068966 0.71360060 0.8263675 0.8178434 0.92222972 TRUE 0.5 0.92222972 TRUE 0.80101643 0.8585596 0.6176825 0.7874073 187272 4479 2156044 2156045 1 123 Same + + 0.0000000 0.000000000 0 -5.923381e-01 192.4 1.796318 2.443807 0.8382780 2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] T two component, sigma54 specific, transcriptional regulator, Fis family 1.706982 2.365513 0.8033984 176 Transaldolase [Carbohydrate transport and metabolism] G transaldolase - TRUE TRUE 28 TRUE 0.6028627 0.4518687 0.9003919 1.082041 0.9479597 N 0.9181581 0.6295232 33.07758621 0.17949256 0.3797354 0.2827378 0.11810898 FALSE 0.5 0.11810898 FALSE 0.05668076 0.6295232 0.2154839 0.5090396 187272 4479 2156045 2156046 1 -3 Same + + 0.0000000 0.000000000 0 -2.870445e+00 NA 1.706982 2.365513 0.8033984 176 Transaldolase [Carbohydrate transport and metabolism] G transaldolase 1.430907 1.968976 0.8029815 2967 Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism] P ApaG domain protein - TRUE TRUE 29 TRUE 0.6028627 0.3359197 0.9003919 1.082041 0.9952947 N 0.9181581 0.6227309 4.87068966 0.71360060 0.3614740 0.8178434 0.58515307 TRUE 0.5 0.58515307 TRUE 0.39069432 0.6227309 0.2046745 0.5017865 187272 4479 2156046 2156047 1 48 Same + + 5.7843683 127.131444226 0 1.344737e+02 NA 1.430907 1.968976 0.8029815 2967 Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism] P ApaG domain protein 1.478776 2.050087 0.7573481 - - - bis(5'nucleosyl)-tetraphosphatase, ApaH TRUE TRUE 30 TRUE 1.3026454 2.6067133 3.1445437 1.082041 0.9952947 U 0.8785504 0.9130286 24.56896552 0.56551060 0.8996032 0.7010757 0.92102679 TRUE 0.5 0.92102679 TRUE 0.77479026 0.9130286 0.7255185 0.8649677 187272 4479 2156049 2156050 1 87 Same + + 0.0000000 -0.723321147 0 -3.089352e+00 NA 1.776585 2.464828 0.8594740 1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] O protein of unknown function DUF255 1.653231 2.324677 0.9186554 1959 Predicted transcriptional regulator [Transcription] K transcriptional regulator, BadM/Rrf2 family - TRUE TRUE 31 TRUE 0.6028627 0.3321747 0.4461505 1.082041 0.9952947 N 0.9181581 0.5893926 29.63793103 0.35731679 0.2657400 0.5004597 0.16751061 FALSE 0.5 0.16751061 FALSE 0.09091545 0.5893926 0.1524544 0.4669098 187272 4479 2156053 2156054 1 226 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 1.934744 2.679986 0.9436340 2331 Uncharacterized protein conserved in bacteria [Function unknown] S putative regulatory protein, FmdB family 1.909004 2.632509 0.8997490 - - - OmpA domain protein transmembrane region-containing protein FALSE TRUE 31 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 37.01724138 0.10367330 0.4896175 0.1724742 0.09987660 FALSE 0.5 0.09987660 FALSE 0.04455125 0.6737417 0.2873109 0.5575311 187272 4479 2156055 2156056 1 -3 Same + + 0.0000000 -0.379888266 0 -6.047111e-01 NA 2.604514 3.401041 1.0603173 - - - hypothetical protein 1.700297 2.367430 0.8207790 654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] HC Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family TRUE TRUE 31 TRUE 0.6028627 0.4508453 0.4702678 1.082041 0.9952947 U 0.8785504 0.5994352 4.87068966 0.71360060 0.2956990 0.8178434 0.51126621 TRUE 0.5 0.51126621 TRUE 0.33478036 0.5994352 0.1680405 0.4772913 187272 4479 2156056 2156057 1 137 Same + + 0.0000000 -0.845986385 0 -8.459864e-01 NA 1.700297 2.367430 0.8207790 654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] HC Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 1.420658 1.888299 0.7976094 - - - hypothetical protein TRUE TRUE 32 TRUE 0.6028627 0.4251958 0.4286292 1.082041 0.9952947 U 0.8785504 0.5939342 34.04310345 0.15220585 0.2794139 0.2444313 0.06508421 FALSE 0.5 0.06508421 FALSE 0.03294395 0.5939342 0.1594877 0.4715915 187272 4479 2156058 2156059 1 44 Same - - 0.0000000 0.000000000 0 0.000000e+00 192.4 2.052722 2.796392 0.8383817 - - - hypothetical protein 1.768982 2.484618 0.8605140 69 Glutamate synthase domain 2 [Amino acid transport and metabolism] E ferredoxin-dependent glutamate synthase FALSE TRUE 32 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9479597 U 0.8785504 0.6699838 23.82758621 0.58507593 0.4808430 0.7175850 0.56635144 TRUE 0.5 0.56635144 TRUE 0.35541202 0.6699838 0.2811065 0.5533220 187272 4479 2156059 2156060 1 36 Same - - 0.0000000 -0.328925031 0 -3.530226e-01 NA 1.768982 2.484618 0.8605140 69 Glutamate synthase domain 2 [Amino acid transport and metabolism] E ferredoxin-dependent glutamate synthase 2.059993 2.851715 0.9269261 - - - hypothetical protein FALSE TRUE 31 TRUE 0.6028627 0.4855073 0.4785160 1.082041 0.9952947 U 0.8785504 0.6033377 22.67241379 0.62110800 0.3070719 0.7470843 0.42077557 FALSE 0.5 0.42077557 FALSE 0.25685533 0.6033377 0.1741305 0.4813542 187272 4479 2156060 2156061 1 149 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 2.059993 2.851715 0.9269261 - - - hypothetical protein 2.085413 2.844459 0.9363015 - - - hypothetical protein FALSE TRUE 30 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 34.75862069 0.13591016 0.4896175 0.2208337 0.13110558 FALSE 0.5 0.13110558 FALSE 0.05962727 0.6737417 0.2873109 0.5575311 187272 4479 2156061 2156062 1 100 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 2.085413 2.844459 0.9363015 - - - hypothetical protein 2.701201 3.666677 1.0269465 - - - DoxX family protein FALSE TRUE 29 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 31.04310345 0.27507657 0.4896175 0.4060910 0.26687172 FALSE 0.5 0.26687172 FALSE 0.13267663 0.6737417 0.2873109 0.5575311 187272 4479 2156062 2156063 1 230 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 2.701201 3.666677 1.0269465 - - - DoxX family protein 1.759386 2.442550 0.8479332 - - - Tubulin-tyrosine ligase FALSE TRUE 28 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 37.06034483 0.10324546 0.4896175 0.1718169 0.09946269 FALSE 0.5 0.09946269 FALSE 0.04435532 0.6737417 0.2873109 0.5575311 187272 4479 2156063 1387082 1 217 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 1.759386 2.442550 0.8479332 - - - Tubulin-tyrosine ligase NA NA NA FALSE TRUE 27 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 36.80172414 0.10591804 0.4896175 0.1759163 0.10204850 FALSE 0.5 0.10204850 FALSE 0.04558097 0.6737417 0.2873109 0.5575311 187272 4479 1387082 2156064 1 336 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA NA NA NA 1.477545 2.009990 0.7431692 1729 Uncharacterized protein conserved in bacteria [Function unknown] S hypothetical protein FALSE TRUE 26 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 38.59482759 0.09282972 0.4896175 0.1556844 0.08939053 FALSE 0.5 0.08939053 FALSE 0.03961814 0.6737417 0.2873109 0.5575311 187272 4479 2156064 2156065 1 -3 Same - - 13.4125612 39.744818115 0 8.647041e+01 192.4 1.477545 2.009990 0.7431692 1729 Uncharacterized protein conserved in bacteria [Function unknown] S hypothetical protein 1.488364 2.036355 0.7755369 - - - OmpA/MotB domain protein FALSE TRUE 25 TRUE 2.0315863 2.3303855 2.3720834 1.082041 0.9479597 U 0.8785504 0.9071087 4.87068966 0.71360060 0.8920697 0.8178434 0.95369060 TRUE 0.5 0.95369060 TRUE 0.86123587 0.9071087 0.7135435 0.8562913 187272 4479 2156065 2156066 1 65 Same - - 20.6693641 54.212818268 0 1.164918e+02 192.4 1.488364 2.036355 0.7755369 - - - OmpA/MotB domain protein 1.494723 2.110150 0.7321375 823 Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] U TolB, N-terminal domain protein FALSE TRUE 24 TRUE 2.4974735 2.5020055 2.4937495 1.082041 0.9479597 U 0.8785504 0.9288436 27.02586207 0.49069922 0.9192581 0.6345207 0.91645298 TRUE 0.5 0.91645298 TRUE 0.75093069 0.9288436 0.7578246 0.8884544 187272 4479 2156066 2156067 1 18 Same - - 11.2191108 43.843503984 0 7.890391e+01 19.0 1.494723 2.110150 0.7321375 823 Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] U TolB, N-terminal domain protein 1.623574 2.221692 0.7929614 3064 Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] M TonB family protein - FALSE TRUE 23 TRUE 1.8598664 2.2553682 2.4020103 1.082041 2.9704492 N 0.9181581 0.9493619 18.90517241 0.83025879 0.9437822 0.8981037 0.98796853 TRUE 0.5 0.98796853 TRUE 0.95149976 0.9493619 0.8004339 0.9196111 187272 4479 2156067 2156068 1 2 Same - - 15.9304134 51.367049780 0 9.019262e+01 192.4 1.623574 2.221692 0.7929614 3064 Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] M TonB family protein 1.773381 2.546673 0.9346874 848 Biopolymer transport protein [Intracellular trafficking and secretion] U Biopolymer transport protein ExbD/TolR - FALSE TRUE 22 TRUE 2.2467671 2.3515661 2.4652036 1.082041 0.9479597 N 0.9181581 0.9178785 12.56896552 0.14363233 0.9057026 0.2320850 0.61699544 TRUE 0.5 0.61699544 TRUE 0.31791563 0.9178785 0.7353767 0.8721223 187272 4479 2156068 2156069 1 13 Same - - 107.1704262 329.611776159 0 6.284591e+02 113.0 1.773381 2.546673 0.9346874 848 Biopolymer transport protein [Intracellular trafficking and secretion] U Biopolymer transport protein ExbD/TolR 1.635565 2.236824 0.8430352 811 Biopolymer transport proteins [Intracellular trafficking and secretion] U MotA/TolQ/ExbB proton channel U FALSE TRUE 21 TRUE 4.2279990 3.7205835 3.9509112 1.082041 1.4575438 Y 2.5510465 0.9926731 17.44827586 0.86972311 0.9922206 0.9232524 0.99882696 TRUE 0.5 0.99882696 TRUE 0.98237773 0.9926731 0.8930518 0.9880480 187272 4479 2156069 2156070 1 369 Same - - 0.0000000 -15.361419882 0 -3.147963e+01 192.4 1.635565 2.236824 0.8430352 811 Biopolymer transport proteins [Intracellular trafficking and secretion] U MotA/TolQ/ExbB proton channel 1.418004 1.933213 0.6633654 281 Malic enzyme [Energy production and conversion] C Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) - FALSE TRUE 20 TRUE 0.6028627 0.2847473 0.4109531 1.082041 0.9479597 N 0.9181581 0.5780707 38.82758621 0.09201657 0.2307164 0.1544144 0.02949694 FALSE 0.5 0.02949694 FALSE 0.01557394 0.5780707 0.1350295 0.4553316 187272 4479 2156070 2156071 1 268 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 1.418004 1.933213 0.6633654 281 Malic enzyme [Energy production and conversion] C Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) 2.558905 3.599782 1.0645220 - - - hypothetical protein FALSE TRUE 19 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 37.50862069 0.09921713 0.4896175 0.1656072 0.09556622 FALSE 0.5 0.09556622 FALSE 0.04251577 0.6737417 0.2873109 0.5575311 187272 4479 2156072 2156073 1 289 Same + + 0.0000000 -9.693501530 0 -1.858223e+01 192.4 1.305171 1.740992 0.6399974 492 Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] O thioredoxin reductase 5.950650 8.295375 1.1232347 4969 Tfp pilus assembly protein, major pilin PilA [Cell motility and secretion / Intracellular trafficking and secretion] NU Fimbrial protein pilin - TRUE TRUE 19 TRUE 0.6028627 0.2833309 0.4002026 1.082041 0.9479597 N 0.9181581 0.5771353 37.93103448 0.09616052 0.2277614 0.1608705 0.03042398 FALSE 0.5 0.03042398 FALSE 0.01614042 0.5771353 0.1335968 0.4543810 187272 4479 2156075 2156076 1 10 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA 2.736794 3.804315 1.0610046 - - - hypothetical protein 2.474387 3.330604 0.9897020 - - - Fimbrial protein pilin TRUE TRUE 20 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 16.40517241 0.82280922 0.4896175 0.8932489 0.81667209 TRUE 0.5 0.81667209 TRUE 0.65181271 0.6737417 0.2873109 0.5575311 187272 4479 2156076 2156077 1 309 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA 2.474387 3.330604 0.9897020 - - - Fimbrial protein pilin 3.830218 5.488731 1.1256239 4970 Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion] NU putative type-4 fimbrial pilin related signal peptide protein TRUE TRUE 21 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 38.25862069 0.09431332 0.4896175 0.1579976 0.09082467 FALSE 0.5 0.09082467 FALSE 0.04028908 0.6737417 0.2873109 0.5575311 187272 4479 2156077 2156078 1 44 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA 3.830218 5.488731 1.1256239 4970 Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion] NU putative type-4 fimbrial pilin related signal peptide protein 4.058045 5.428156 1.0974482 - - - pilus assembly protein TRUE TRUE 22 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 23.82758621 0.58507593 0.4896175 0.7175850 0.57495824 TRUE 0.5 0.57495824 TRUE 0.36242959 0.6737417 0.2873109 0.5575311 187272 4479 2156078 2156079 1 9 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA 4.058045 5.428156 1.0974482 - - - pilus assembly protein 3.500407 4.796881 1.0863575 - - - Prepilin-type cleavage/methylation-like protein TRUE TRUE 23 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 16.12931034 0.80191709 0.4896175 0.8794453 0.79523643 TRUE 0.5 0.79523643 TRUE 0.62006849 0.6737417 0.2873109 0.5575311 187272 4479 2156079 2156080 1 65 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA 3.500407 4.796881 1.0863575 - - - Prepilin-type cleavage/methylation-like protein 3.557655 4.921557 1.1041250 - - - hypothetical protein TRUE TRUE 24 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 27.02586207 0.49069922 0.4896175 0.6345207 0.48032429 FALSE 0.5 0.48032429 FALSE 0.27975283 0.6737417 0.2873109 0.5575311 187272 4479 2156081 2156082 1 93 Same - - 0.0000000 -5.101734375 0 -6.302343e+00 NA 2.294678 3.136621 0.9326560 - - - hypothetical protein 1.460444 2.002929 0.6734253 2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] T two component, sigma54 specific, transcriptional regulator, Fis family FALSE TRUE 24 TRUE 0.6028627 0.3017927 0.3902074 1.082041 0.9952947 U 0.8785504 0.5792119 30.37931034 0.31697826 0.2343089 0.4554123 0.12435371 FALSE 0.5 0.12435371 FALSE 0.06849773 0.5792119 0.1367790 0.4564927 187272 4479 2156082 2156083 1 122 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 1.460444 2.002929 0.6734253 2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] T two component, sigma54 specific, transcriptional regulator, Fis family 1.766360 2.462067 0.9136319 - - - hypothetical protein FALSE TRUE 23 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 32.92241379 0.18426553 0.4896175 0.2892883 0.17810386 FALSE 0.5 0.17810386 FALSE 0.08346356 0.6737417 0.2873109 0.5575311 187272 4479 2156083 2156084 1 0 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 1.766360 2.462067 0.9136319 - - - hypothetical protein 1.302369 1.769931 0.6868385 461 Orotate phosphoribosyltransferase [Nucleotide transport and metabolism] F orotate phosphoribosyltransferase FALSE TRUE 22 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 8.25000000 0.15996687 0.4896175 0.2554779 0.15446387 FALSE 0.5 0.15446387 FALSE 0.07129565 0.6737417 0.2873109 0.5575311 187272 4479 2156084 2156085 1 6 Same - - 0.0000000 -22.635661093 0 -3.651904e+01 192.4 1.302369 1.769931 0.6868385 461 Orotate phosphoribosyltransferase [Nucleotide transport and metabolism] F orotate phosphoribosyltransferase 1.404456 1.927624 0.6439592 2352 Phosphoenolpyruvate carboxylase [Energy production and conversion] C Phosphoenolpyruvate carboxylase - FALSE TRUE 21 TRUE 0.6028627 0.2861341 0.4242686 1.082041 0.9479597 N 0.9181581 0.5791928 15.20689655 0.70828963 0.2342488 0.8139615 0.42619764 FALSE 0.5 0.42619764 FALSE 0.27778786 0.5791928 0.1367497 0.4564733 187272 4479 2156085 2156086 1 627 Same - - 0.0000000 1.209514450 0 6.846319e-01 12.0 1.404456 1.927624 0.6439592 2352 Phosphoenolpyruvate carboxylase [Energy production and conversion] C Phosphoenolpyruvate carboxylase 1.343851 1.815362 0.5826286 538 Isocitrate dehydrogenases [Energy production and conversion] C isocitrate dehydrogenase, NADP-dependent C FALSE TRUE 20 TRUE 0.6028627 1.4476874 1.6299310 1.082041 3.1454153 Y 2.5510465 0.9218519 39.80172414 0.09010485 0.9106519 0.1514225 0.50231645 TRUE 0.5 0.50231645 TRUE 0.22301335 0.9218519 0.7434854 0.8780154 187272 4479 2156086 2156087 1 275 Same - - 0.0000000 0.000000000 0 0.000000e+00 192.4 1.343851 1.815362 0.5826286 538 Isocitrate dehydrogenases [Energy production and conversion] C isocitrate dehydrogenase, NADP-dependent 2.431604 3.369844 0.9664904 - - - Sel1 domain protein repeat-containing protein FALSE TRUE 19 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9479597 U 0.8785504 0.6699838 37.65517241 0.09806845 0.4808430 0.1638297 0.09149312 FALSE 0.5 0.09149312 FALSE 0.04078298 0.6699838 0.2811065 0.5533220 187272 4479 2156087 2156088 1 55 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 2.431604 3.369844 0.9664904 - - - Sel1 domain protein repeat-containing protein 1.733193 2.406591 0.8235692 - - - hypothetical protein FALSE TRUE 18 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 25.57758621 0.53031236 0.4896175 0.6704600 0.51995496 TRUE 0.5 0.51995496 TRUE 0.31279551 0.6737417 0.2873109 0.5575311 187272 4479 2156088 2156089 1 5 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 1.733193 2.406591 0.8235692 - - - hypothetical protein 2.847509 3.823518 0.9914614 790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] R Sel1 domain protein repeat-containing protein FALSE TRUE 17 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 14.70689655 0.64829100 0.4896175 0.7685965 0.63876305 TRUE 0.5 0.63876305 TRUE 0.42630446 0.6737417 0.2873109 0.5575311 187272 4479 2156089 2156090 1 11 Same - - 0.0000000 0.000000000 0 0.000000e+00 NA 2.847509 3.823518 0.9914614 790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] R Sel1 domain protein repeat-containing protein 1.642387 2.279087 0.7800331 - - - hypothetical protein FALSE TRUE 16 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 16.78448276 0.84564244 0.4896175 0.9080198 0.84014251 TRUE 0.5 0.84014251 TRUE 0.68833448 0.6737417 0.2873109 0.5575311 187272 4479 2156090 2156091 1 255 Same - - 0.0000000 -0.472475818 0 -4.724758e-01 NA 1.642387 2.279087 0.7800331 - - - hypothetical protein 1.827059 2.570837 0.8385467 30 Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] J dimethyladenosine transferase FALSE TRUE 15 TRUE 0.6028627 0.4671466 0.4592141 1.082041 0.9952947 U 0.8785504 0.6001823 37.37068966 0.10037433 0.2978878 0.1673948 0.04519811 FALSE 0.5 0.04519811 FALSE 0.02221886 0.6001823 0.1692050 0.4780679 187272 4479 2156092 2156093 1 266 Same + + 0.0000000 -2.269144210 0 -1.778684e+01 NA 1.854193 2.570695 0.9107631 2928 Uncharacterized conserved protein [Function unknown] S protein of unknown function DUF502 1.526094 2.056137 0.7011978 2609 Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] C 2-oxo-acid dehydrogenase E1 subunit, homodimeric type TRUE TRUE 15 TRUE 0.6028627 0.2835322 0.3948426 1.082041 0.9952947 U 0.8785504 0.5777870 37.45689655 0.09964246 0.2298212 0.1662646 0.03196816 FALSE 0.5 0.03196816 FALSE 0.01692103 0.5777870 0.1345949 0.4550432 187272 4479 2156093 2156094 1 79 Same + + 45.6946809 164.018591550 0 3.245706e+02 192.4 1.526094 2.056137 0.7011978 2609 Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] C 2-oxo-acid dehydrogenase E1 subunit, homodimeric type 1.620902 2.293894 0.8033433 508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] C pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase C TRUE TRUE 16 TRUE 3.3231193 3.2757492 3.4535209 1.082041 0.9479597 Y 2.5510465 0.9826711 28.76724138 0.40592395 0.9814138 0.5518198 0.97303120 TRUE 0.5 0.97303120 TRUE 0.82229200 0.9826711 0.8713329 0.9719111 187272 4479 2156094 2156095 1 20 Same + + 65.0112531 227.556422394 0 4.455106e+02 192.4 1.620902 2.293894 0.8033433 508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] C pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 1.563863 2.144057 0.7409538 1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] C dihydrolipoamide dehydrogenase C TRUE TRUE 17 TRUE 3.7236786 3.5261356 3.6936818 1.082041 0.9479597 Y 2.5510465 0.9875010 19.42241379 0.79645330 0.9866597 0.8757887 0.99655647 TRUE 0.5 0.99655647 TRUE 0.96687617 0.9875010 0.8817955 0.9796780 187272 4479 2156096 2156097 1 -3 Same - - 0.0000000 -9.065217848 0 -2.294034e+01 NA 1.849651 2.627992 0.8509661 2890 Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] J modification methylase, HemK family 1.455418 1.981590 0.8180803 2835 Uncharacterized conserved protein [Function unknown] S protein of unknown function DUF343 FALSE TRUE 17 TRUE 0.6028627 0.2832684 0.3973622 1.082041 0.9952947 U 0.8785504 0.5779484 4.87068966 0.71360060 0.2303308 0.8178434 0.42714519 FALSE 0.5 0.42714519 FALSE 0.27971607 0.5779484 0.1348422 0.4552073 187272 4479 2156098 2156099 1 120 Same + + 0.0000000 0.560600525 0 5.606005e-01 192.4 1.862090 2.592754 0.8677685 1219 ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] O ATP-dependent Clp protease, ATP-binding subunit ClpX 1.558152 2.128868 0.7738060 722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] E phospho-2-dehydro-3-deoxyheptonate aldolase - TRUE TRUE 17 TRUE 0.6028627 1.4232985 1.5272017 1.082041 0.9479597 N 0.9181581 0.7515329 32.68103448 0.19180212 0.6515435 0.2995430 0.30735548 FALSE 0.5 0.30735548 FALSE 0.14671809 0.7515329 0.4201313 0.6485781 187272 4479 2156099 2156100 1 134 Same + + 0.0000000 -28.737852700 0 -3.679130e+01 NA 1.558152 2.128868 0.7738060 722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] E phospho-2-dehydro-3-deoxyheptonate aldolase 1.583071 2.058438 0.7860888 1734 DnaK suppressor protein [Signal transduction mechanisms] T transcriptional regulators, TraR/DksA family - TRUE TRUE 18 TRUE 0.6028627 0.2862628 0.4426512 1.082041 0.9952947 N 0.9181581 0.5847130 33.74137931 0.16017792 0.2514284 0.2557766 0.06020458 FALSE 0.5 0.06020458 FALSE 0.03138947 0.5847130 0.1452335 0.4621082 187272 4479 2156100 2156101 1 122 Same + + 1.6094379 -23.520441482 0 -2.298132e+01 NA 1.583071 2.058438 0.7860888 1734 DnaK suppressor protein [Signal transduction mechanisms] T transcriptional regulators, TraR/DksA family 1.874394 2.673112 0.9443877 1409 Predicted phosphohydrolases [General function prediction only] R metallophosphoesterase TRUE TRUE 19 TRUE 0.8270602 0.2832955 0.4260190 1.082041 0.9952947 U 0.8785504 0.6015982 32.92241379 0.18426553 0.3020209 0.2892883 0.08904074 FALSE 0.5 0.08904074 FALSE 0.04464451 0.6015982 0.1714137 0.4795413 187272 4479 2156102 2156103 1 -73 Same - - 26.2718834 135.275212045 0 2.583885e+02 151.0 1.597202 2.160989 0.7559168 216 Protein chain release factor A [Translation, ribosomal structure and biogenesis] J peptide chain release factor 1 1.832311 2.500091 0.8434085 373 Glutamyl-tRNA reductase [Coenzyme metabolism] H Shikimate/quinate 5-dehydrogenase - FALSE TRUE 19 TRUE 2.7514397 3.0955810 3.2392045 1.082041 1.2264770 N 0.9181581 0.9625173 0.00000000 0.98056160 0.9589559 0.9891184 0.99915225 TRUE 0.5 0.99915225 TRUE 0.99590396 0.9625173 0.8281759 0.9400072 187272 4479 2156104 2156105 1 -3 Same + + 15.7444760 27.214034606 0 1.140581e+02 192.4 1.775284 2.433928 0.8433712 5010 Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] U Tetratricopeptide TPR_4 1.681167 2.422712 0.8847392 3017 Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane] M outer membrane lipoprotein LolB - TRUE TRUE 19 TRUE 2.2255733 2.4863900 2.2423488 1.082041 0.9479597 N 0.9181581 0.9161537 4.87068966 0.71360060 0.9035409 0.8178434 0.95891419 TRUE 0.5 0.95891419 TRUE 0.87180875 0.9161537 0.7318660 0.8695731 187272 4479 2156105 2156106 1 -3 Same + + 21.7680387 123.146356627 0 2.394324e+02 192.4 1.681167 2.422712 0.8847392 3017 Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane] M outer membrane lipoprotein LolB 1.875622 2.656933 0.9080429 1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism] I 4-diphosphocytidyl-2C-methyl-D-erythritol kinase - TRUE TRUE 20 TRUE 2.5788564 3.0046831 3.1154007 1.082041 0.9479597 N 0.9181581 0.9527118 4.87068966 0.71360060 0.9476859 0.8178434 0.97832522 TRUE 0.5 0.97832522 TRUE 0.91266100 0.9527118 0.8074665 0.9247733 187272 4479 2156106 1387126 1 28 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA 1.875622 2.656933 0.9080429 1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism] I 4-diphosphocytidyl-2C-methyl-D-erythritol kinase NA NA NA TRUE TRUE 21 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 21.15517241 0.71167998 0.4896175 0.8164420 0.70308277 TRUE 0.5 0.70308277 TRUE 0.49876918 0.6737417 0.2873109 0.5575311 187272 4479 1387126 2156107 1 60 Same + + 0.0000000 0.000000000 0 0.000000e+00 NA NA NA NA 1.451287 2.007820 0.7394481 462 Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism] FE ribose-phosphate pyrophosphokinase TRUE TRUE 22 TRUE 0.6028627 0.9320657 0.9003919 1.082041 0.9952947 U 0.8785504 0.6737417 26.37068966 0.50928335 0.4896175 0.6515832 0.49890040 FALSE 0.5 0.49890040 FALSE 0.29497495 0.6737417 0.2873109 0.5575311 187272 4479 2156107 2156108 1 100 Same + + 110.6016133 153.684181111 0 4.529624e+02 192.4 1.451287 2.007820 0.7394481 462 Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism] FE ribose-phosphate pyrophosphokinase 1.557641 2.112427 0.7558790 1825 Ribosomal protein L25 (general stress protein Ctc) [Translation, ribosomal structure and biogenesis] J ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 - TRUE TRUE 23 TRUE 4.2446453 3.5321114 3.3912942 1.082041 0.9479597 N 0.9181581 0.9812587 31.04310345 0.27507657 0.9798699 0.4060910 0.94864095 TRUE 0.5 0.94864095 TRUE 0.71439699 0.9812587 0.8682819 0.9696487 187272 4479 2156108 2156109 1 33 Same + + 169.8523045 145.288051040 0 7.244427e+02 67.0 1.557641 2.112427 0.7558790 1825 Ribosomal protein L25 (general stress protein Ctc) [Translation, ribosomal structure and biogenesis] J ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 1.790992 2.495812 0.9078738 193 Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis] J Aminoacyl-tRNA hydrolase J TRUE TRUE 24 TRUE 4.7111429 3.7701985 3.3482039 1.082041 2.0570837 Y 2.5510465 0.9942509 22.10344828 0.65092448 0.9939056 0.7706479 0.99672247 TRUE 0.5 0.99672247 TRUE 0.94169508 0.9942509 0.8964966 0.9906125 187272 4479 2156109 2156110 1 12 Same + + 76.5071819 172.695475245 0 3.603327e+02 192.4 1.790992 2.495812 0.9078738 193 Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis] J Aminoacyl-tRNA hydrolase 1.441447 1.939382 0.6965012 12 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] J GTP-binding protein YchF J TRUE TRUE 25 TRUE 3.8677648 3.3644885 3.4975422 1.082041 0.9479597 Y 2.5510465 0.9866508 17.12068966 0.86030624 0.9857400 0.9173371 0.99765651 TRUE 0.5 0.99765651 TRUE 0.97832740 0.9866508 0.8799503 0.9783073 187272 4479 2156112 2156113 1 205 Same + + 0.0000000 -3.375348208 0 -4.214347e+00 NA 1.709847 2.315264 0.9168858 2900 Uncharacterized protein conserved in bacteria [Function unknown] S SlyX protein, putative 1.610707 2.181521 0.7536654 1004 Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] M UDP-glucose 6-dehydrogenase TRUE TRUE 26 TRUE 0.6028627 0.3196913 0.3907325 1.082041 0.9952947 U 0.8785504 0.5809828 36.56034483 0.10863938 0.2398554 0.1800738 0.03703379 FALSE 0.5 0.03703379 FALSE 0.01937529 0.5809828 0.1394967 0.4582971 187272 4479 2156113 2156114 1 8 Same + + 2.2630116 -24.316264720 0 -3.444159e+01 192.4 1.610707 2.181521 0.7536654 1004 Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] M UDP-glucose 6-dehydrogenase 1.808109 2.516447 0.8286782 166 Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism] G Glucose-6-phosphate isomerase - TRUE TRUE 27 TRUE 0.8855326 0.2856454 0.4285894 1.082041 0.9479597 N 0.9181581 0.6065529 15.89655172 0.78152198 0.3163319 0.8656957 0.62337003 TRUE 0.5 0.62337003 TRUE 0.43844462 0.6065529 0.1791621 0.4847137 187272 4479 2156116 2156117 1 207 Same + + 2.5649494 -18.313072906 0 -2.443068e+01 192.4 1.803975 2.544163 0.8855977 132 Dethiobiotin synthetase [Coenzyme metabolism] H dethiobi