VIMSS Operon Predictions for Archaeoglobus fulgidus

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 3290324 3330884 FALSE 0.047 1 0
 3330884 3290325 FALSE 0.047 1 0
 3290325 3330885 FALSE 0.047 1 0
 3330885 3290326 FALSE 0.047 1 0
 3290326 3330886 FALSE 0.047 1 0
 3330886 3290327 FALSE 0.047 1 0
 3290327 3330887 FALSE 0.047 1 0
 3290328 3330888 FALSE 0.047 1 0
 3330888 3290329 FALSE 0.047 1 0
 3290329 3330889 FALSE 0.047 1 0
 3330889 3290330 FALSE 0.047 1 0
 3290330 3330890 FALSE 0.047 1 0
 3330890 3290331 FALSE 0.047 1 0
 3290331 3330891 FALSE 0.047 1 0
 3330891 3290332 FALSE 0.047 1 0
 3290332 3330892 FALSE 0.047 1 0
 3330892 3290333 FALSE 0.047 1 0
 3290333 3330893 FALSE 0.047 1 0
 3330893 3290334 FALSE 0.047 1 0
 3290334 3330894 FALSE 0.047 1 0
 3330894 3290335 FALSE 0.047 1 0
 3290335 3330895 FALSE 0.047 1 0
 3330895 3290336 FALSE 0.047 1 0
 3290336 3330896 FALSE 0.047 1 0
 3330896 3290337 FALSE 0.047 1 0
 3290337 3330897 FALSE 0.047 1 0
 3330897 3290338 FALSE 0.047 1 0
 3290338 3330898 FALSE 0.047 1 0
 3330898 3290339 FALSE 0.047 1 0
 3290339 3330899 FALSE 0.047 1 0
 3330899 3290340 FALSE 0.047 1 0
 3290340 3330900 FALSE 0.047 1 0
 3330900 3290341 FALSE 0.047 1 0
 3290341 3330901 FALSE 0.047 1 0
 3330901 3290342 FALSE 0.047 1 0
 3290342 3330902 FALSE 0.047 1 0
 3330902 3290343 FALSE 0.047 1 0
 3290343 3330903 FALSE 0.047 1 0
 3330903 3290344 FALSE 0.047 1 0
 3290344 3330904 FALSE 0.047 1 0
 3330904 3290345 FALSE 0.047 1 0
 3290345 3330905 FALSE 0.047 1 0
 3330905 3290346 FALSE 0.047 1 0
 3290346 3330906 FALSE 0.047 1 0
 3330906 3290347 FALSE 0.047 1 0
 3290347 3330907 FALSE 0.047 1 0
 3330907 3290348 FALSE 0.047 1 0
 3290348 3330908 FALSE 0.047 1 0
 3330908 3290349 FALSE 0.047 1 0
 3290349 3330909 FALSE 0.047 1 0
 3330909 3290350 FALSE 0.047 1 0
 3290350 3330910 FALSE 0.047 1 0
 3330910 3290351 FALSE 0.047 1 0
 3290351 3330911 FALSE 0.047 1 0
 3330911 3290352 FALSE 0.047 1 0
 3290352 3330912 FALSE 0.047 1 0
 3330912 3290353 FALSE 0.047 1 0
 3290353 3330913 FALSE 0.047 1 0
 3330913 3290354 FALSE 0.047 1 0
 3290354 3330914 FALSE 0.047 1 0
 3330914 3290355 FALSE 0.047 1 0
 3290355 3330915 FALSE 0.047 1 0
 3330915 3290356 FALSE 0.047 1 0
 3290356 3330916 FALSE 0.047 1 0
 3330916 3290357 FALSE 0.047 1 0
 3290357 3330917 FALSE 0.047 1 0
 3330917 3290358 FALSE 0.047 1 0
 3290358 3330918 FALSE 0.047 1 0
 3330918 3290359 FALSE 0.047 1 0
 3290359 3330919 FALSE 0.047 1 0
 3330919 3290360 FALSE 0.047 1 0
 3290360 3330920 FALSE 0.047 1 0
 3330920 3290361 FALSE 0.047 1 0
 3290361 3330921 FALSE 0.047 1 0
 3330921 3290362 FALSE 0.047 1 0
 3290362 3330922 FALSE 0.047 1 0
 3330922 3290363 FALSE 0.047 1 0
 3290363 3330923 FALSE 0.047 1 0
 3330923 3290364 FALSE 0.047 1 0
 3290364 3330924 FALSE 0.047 1 0
 3330924 3290365 FALSE 0.047 1 0
 3290365 3330925 FALSE 0.047 1 0
 3330925 3290366 FALSE 0.047 1 0
 3290366 3330926 FALSE 0.047 1 0
 3330926 3290367 FALSE 0.047 1 0
 3290367 3330927 FALSE 0.047 1 0
 3330927 3290368 FALSE 0.047 1 0
 3290368 3330928 FALSE 0.047 1 0
 3330928 3290369 FALSE 0.047 1 0
 3330929 3290370 FALSE 0.047 1 0
 3290370 3330930 FALSE 0.047 1 0
 3330930 3290371 FALSE 0.047 1 0
 3290371 3330931 FALSE 0.047 1 0
 3330931 3290372 FALSE 0.047 1 0
 3290372 3330932 FALSE 0.047 1 0
 3330932 3290373 FALSE 0.047 1 0
 3290373 3330933 FALSE 0.047 1 0
 3330933 3290374 FALSE 0.047 1 0
 3290374 3330934 FALSE 0.047 1 0
 3330934 3290375 FALSE 0.047 1 0
 3290375 3330935 FALSE 0.047 1 0
 3330935 3290376 FALSE 0.047 1 0
 3290376 3330936 FALSE 0.047 1 0
 3330936 3290377 FALSE 0.047 1 0
 3290377 3330937 FALSE 0.047 1 0
 3330937 3290378 FALSE 0.047 1 0
 3290378 3330938 FALSE 0.047 1 0
 3330938 3290379 FALSE 0.047 1 0
 3290379 3330939 FALSE 0.047 1 0
 3330939 3290380 FALSE 0.047 1 0
 3290380 3330940 FALSE 0.047 1 0
 3330940 3290381 FALSE 0.047 1 0
 3290381 3330941 FALSE 0.047 1 0
 3330941 3290382 FALSE 0.047 1 0
 3290382 3332892 FALSE 0.047 1 0
 3332892 3331865 FALSE 0.047 1 0
 3331865 21876 AF0003 FALSE 0.055 77 0
 21876 21877 AF0003 AF0004 FALSE 0.039 267 0
 21877 21878 AF0004 AF0005 FALSE 0.095 39 0
 21878 21879 AF0005 AF0006 mtaC-1 FALSE 0.037 105 0
 21879 21880 AF0006 AF0007 mtaC-1 FALSE 0.231 1 2.349
 21880 21881 AF0007 AF0008 oxlT-1 FALSE 0.045 74 0
 21881 21882 AF0008 AF0009 oxlT-1 mtr TRUE 0.86 -40 0
 21882 21883 AF0009 AF0010 mtr TRUE 0.896 2 3.014
 21883 21884 AF0010 AF0011 mtaC-2 TRUE 0.886 0 5.856
 21884 21885 AF0011 AF0012 mtaC-2 FALSE 0.038 1 0
 21885 21886 AF0012 AF0013 exuT TRUE 0.565 20 0
 21886 21887 AF0013 AF0014 exuT FALSE 0.048 96 0
 21887 21888 AF0014 AF0015 putP-1 TRUE 0.596 2 0
 21888 21889 AF0015 AF0016 putP-1 FALSE 0.074 55 0
 21889 21890 AF0016 AF0017 hbd-1 TRUE 0.773 4 0
 21890 21891 AF0017 AF0018 hbd-1 acaB-1 TRUE 0.587 23 0
 21891 21892 AF0018 AF0019 acaB-1 TRUE 0.865 5 0
 21892 21893 AF0019 AF0020 caiB-1 TRUE 0.584 3 -0.101
 21893 21894 AF0020 AF0021 caiB-1 FALSE 0.081 39 0
 21895 21896 AF0022 AF0023 aor-1 TRUE 0.857 7 0
 21896 21897 AF0023 AF0024 aor-1 TRUE 0.95 3 2.704
 21897 21898 AF0024 AF0025 cynX TRUE 0.627 5 -0.526
 21899 21900 AF0026 AF0027 FALSE 0.074 56 0
 21901 21902 AF0028 AF0029 FALSE 0.161 32 -0.153
 21903 21904 AF0030 AF0031 FALSE 0.064 64 0
 21906 21907 AF0033 AF0034 acaA-1 acaB-2 TRUE 0.981 -97 21.191
 21909 21910 AF0036 AF0037 pcm-1 cobS-1 TRUE 0.841 -145 -0.332
 21910 21911 AF0037 AF0038 cobS-1 FALSE 0.024 70 -0.011
 21911 21912 AF0038 AF0039 TRUE 0.986 -43 4.394
 21912 21913 AF0039 AF0040 FALSE 0.038 1 0
 21914 21915 AF0041 AF0042 rfbB-1 rfbA-1 TRUE 0.999 -3 107.275
 21916 21917 AF0043 AF0044m wbaZ-1 gmd-1 TRUE 0.989 9 5.809
 21917 21918 AF0044m AF0045 gmd-1 mtfA TRUE 0.997 -3 6.78
 21921 21922 AF0048 AF0049 FALSE 0.095 43 0
 21926 21927 AF0053 AF0054 TRUE 0.671 18 0
 21927 21928 AF0054 AF0055 TRUE 0.702 3 0
 21928 21929 AF0055 AF0056 FALSE 0.434 21 -0.259
 21929 21930 AF0056 AF0057 rpl37AE TRUE 0.981 4 72.328
 21930 21931 AF0057 AF0058 rpl37AE FALSE 0.099 39 -0.276
 21931 21932 AF0058 AF0059 TRUE 0.912 -33 0
 21933 21934 AF0060 AF0061 tmk TRUE 0.505 0 0
 21935 21936 AF0062 AF0063 FALSE 0.076 53 0
 21938 21939 AF0065 AF0066 TRUE 0.967 -3 0
 21939 21940 AF0066 AF0067 FALSE 0.043 126 0
 21940 21941 AF0067 AF0068 TRUE 0.817 12 0
 21941 21942 AF0068 AF0069 FALSE 0.047 1 0
 21942 21943 AF0069 AF0070 TRUE 0.975 -13 0
 21943 21944 AF0070 AF0071 TRUE 0.92 -31 0
 21944 21945 AF0071 AF0072 FALSE 0.067 157 0
 21945 21946 AF0072 AF0073 FALSE 0.038 1057 0
 21946 401729 AF0073 AFtRNA-Ile-1 tRNA-Ile FALSE 0.042 134 0
 21947 21948 AF0074 AF0075 birA FALSE 0.325 27 0
 21948 21949 AF0075 AF0076 TRUE 0.958 -19 0
 21949 21950 AF0076 AF0077 aor-2 TRUE 0.998 -3 42.582
 21952 21953 AF0079 AF0080 argD-1 FALSE 0.336 28 0
 2209625 21954 AFrRNA03 AF0081 TRUE 0.502 23 0
 401684 21955 AFtRNA-Gln-1 AF0082 tRNA-Gln FALSE 0.082 48 0
 21956 21957 AF0083 AF0084 TRUE 0.93 -28 0
 21959 21960 AF0086 AF0087 nrtB-1 nrtC-1 TRUE 0.996 -36 144.245
 21960 21961 AF0087 AF0088 nrtC-1 TRUE 0.999 -3 59.975
 21962 21963 AF0089 AF0090 fadD-1 FALSE 0.066 48 0
 21963 21964 AF0090 AF0091 hpcE-1 TRUE 0.995 -3 4.957
 21965 21966 AF0092 AF0093 cysA cysT TRUE 0.994 -22 16.242
 21966 21967 AF0093 AF0094 cysT TRUE 0.999 -3 201.998
 21967 21968 AF0094 AF0095 FALSE 0.038 627 0
 21968 21969 AF0095 AF0096 TRUE 0.842 11 0
 21969 21970 AF0096 AF0097 FALSE 0.038 302 0
 21970 21971 AF0097 AF0098 FALSE 0.079 50 0
 21971 21972 AF0098 AF0099 FALSE 0.039 282 0
 21972 21973 AF0099 AF0100 TRUE 0.997 -9 3.651
 21973 21974 AF0100 AF0101 FALSE 0.038 625 0
 21974 21975 AF0101 AF0102 TRUE 0.773 4 0
 21977 21978 AF0104 AF0105 TRUE 0.938 -3 -0.43
 21979 21980 AF0106 AF0107 pyrB pyrI TRUE 1 -3 383.737
 21981 21982 AF0108 AF0109