VIMSS Operon Predictions for Acidithiobacillus ferrooxidans ATCC 23270

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 3282938 3282939 FALSE 0.028 180 0
 3282939 3282940 TRUE 0.717 122 9.591
 3282940 3282941 FALSE 0.007 553 0
 3282941 3282942 TRUE 0.999 -3 84.682
 3282942 3282943 TRUE 0.992 28 347.328
 3282943 3282944 FALSE 0.284 99 -6.595
 3282944 3282945 TRUE 0.836 -7 -7.075
 3282946 3282947 FALSE 0.032 168 0
 3282948 3282949 TRUE 0.93 4 -1.363
 3282949 3282950 FALSE 0.012 318 -4.047
 3282951 3282952 TRUE 0.572 19 -0.188
 3282955 3282956 TRUE 0.818 43 12.269
 3282956 3282957 TRUE 0.861 21 4.468
 3282959 3282960 FALSE 0.417 66 -5.13
 3282960 3282961 FALSE 0.256 60 0
 3282961 3282962 TRUE 0.842 4 0
 3282962 3282963 FALSE 0.482 49 -0.091
 3282963 3282964 TRUE 0.898 -3 0
 3282965 3282966 FALSE 0.46 -19 0
 3282966 3282967 FALSE 0.185 100 -0.71
 3282967 3282968 FALSE 0.006 5496 -22.295
 3282968 3282969 FALSE 0.166 86 -0.608
 3282969 3282970 FALSE 0.011 287 0
 3282972 3282973 TRUE 0.999 13 1562.662
 3282973 3282974 TRUE 0.907 84 57.167
 3282974 3282975 FALSE 0.013 265 0
 3282975 3282976 FALSE 0.217 70 0
 3282976 3282977 FALSE 0.007 389 -1.661
 3282977 3282978 TRUE 0.998 -7 145.769
 3282978 3282979 TRUE 0.879 56 2.826
 3282979 3282980 FALSE 0.062 130 -0.086
 3282980 3282981 TRUE 0.759 8 0
 3282981 3282982 TRUE 0.632 12 0
 3282982 3282983 TRUE 0.946 10 2.794
 3282983 3282984 TRUE 0.994 -3 103.157
 3282984 3282985 TRUE 0.829 70 112.476
 3282985 3282986 TRUE 0.993 -7 291.026
 3282986 3282987 TRUE 0.995 -3 112.885
 3282987 3282988 TRUE 1 -3 268.93
 3282988 3282989 TRUE 1 6 843.934
 3282990 3282991 FALSE 0.425 -22 0
 3282993 3282994 TRUE 0.772 52 17.064
 3282994 3282995 FALSE 0.208 156 6.437
 3282995 3282996 TRUE 0.935 31 23.409
 3282996 3282997 FALSE 0.016 296 -3.489
 3282997 3282998 TRUE 0.846 139 102.171
 3282998 3282999 TRUE 0.995 7 30.945
 3282999 3283000 FALSE 0.413 80 -6.05
 3283000 3283001 TRUE 0.988 87 461.772
 3283001 3283002 TRUE 1 5 1040.695
 3283002 3283003 TRUE 0.998 40 1121.088
 3283003 3283004 TRUE 1 -3 839.979
 3283004 3283005 TRUE 1 -3 368.08
 3283005 3283006 TRUE 1 -3 455.819
 3283006 3283007 TRUE 1 -3 513.946
 3283007 3283008 TRUE 0.998 -3 213.273
 3283008 3283009 TRUE 0.909 10 -32.739
 3283009 3283010 TRUE 0.606 32 -4.004
 3283010 3283011 TRUE 0.938 11 1.751
 3283011 3283012 TRUE 0.902 -7 -27.194
 3283012 3283013 TRUE 0.828 123 375.7
 3283014 3283015 TRUE 0.981 -27 349.419
 3283015 3283016 TRUE 0.873 -10 0.554
 3283016 3283017 FALSE 0.024 320 0.554
 3283017 3283018 TRUE 0.999 -3 421.234
 3283018 3283019 TRUE 0.929 26 78.552
 3283019 3283020 TRUE 0.889 -28 43.921
 3283020 3283021 TRUE 0.999 -3 422.678
 3283021 3283022 TRUE 0.996 13 567.595
 3283022 3283023 TRUE 0.882 104 297.323
 3283023 3283024 TRUE 0.993 7 262.737
 3283024 3283025 TRUE 0.972 55 134.019
 3283025 3283026 TRUE 0.998 0 141.548
 3283026 3283027 TRUE 0.998 -3 187.003
 3283027 3283028 TRUE 0.966 108 371.635
 3283028 3283029 TRUE 1 -3 532.093
 3283029 3283030 TRUE 0.609 -70 0.554
 3283030 3283031 TRUE 0.974 -3 0.554
 3283032 3283033 TRUE 0.973 -7 42.077
 3283033 3283034 TRUE 0.808 -93 38.72
 3283034 3283035 TRUE 0.989 -3 5.341
 3283035 3283036 FALSE 0.491 69 0.062
 3283036 3283037 TRUE 0.993 2 62.366
 3283037 3283038 TRUE 0.898 -3 0
 3283038 3283039 FALSE 0.192 79 0
 3283041 3283042 FALSE 0.111 105 0
 3283042 3283043 FALSE 0.43 33 -1.99
 3283043 3283044 TRUE 0.879 32 0.21
 3283044 3283045 TRUE 0.681 38 0.21
 3283045 3283046 FALSE 0.21 72 0
 3283046 3283047 TRUE 0.61 -12 0
 3283047 3283048 TRUE 0.62 19 -0.63
 3283048 3283049 FALSE 0.448 82 0.21
 3283050 3283051 FALSE 0.027 186 0
 3283051 3283052 FALSE 0.01 297 0
 3283052 3283053 TRUE 0.8 6 0
 3283053 3283054 TRUE 0.887 -7 0.21
 3283054 3283055 FALSE 0.119 144 0.21
 3283055 3283056 TRUE 0.965 46 15.871
 3283056 3283057 TRUE 0.992 14 71.536
 3283057 3283058 TRUE 0.934 68 73.387
 3283058 3283059 TRUE 1 -3 350.023
 3283059 3283060 TRUE 0.656 107 -1.441
 3283060 3283061 TRUE 0.558 24 -1.205
 3283061 3283062 FALSE 0.399 62 -6.983
 3283063 3283064 TRUE 0.906 0 0
 3283064 3283065 FALSE 0.04 153 0
 3283065 3283066 TRUE 0.898 -3 0
 3283066 3283067 TRUE 0.557 -13 0
 3283067 3283068 FALSE 0.348 44 0
 3283068 3283069 TRUE 0.743 9 0
 3283069 3283070 FALSE 0.171 91 0
 3283070 3283071 FALSE 0.23 146 0
 3283071 3283072 TRUE 0.982 14 33.25
 3283072 3283073 FALSE 0.188 80 0
 3283073 3283074 FALSE 0.401 -22 -0.019
 3283076 3283077 TRUE 0.999 0 265.316
 3283077 3283078 FALSE 0.036 155 -0.219
 3283078 3283079 TRUE 0.906 0 0
 3283079 3283080 FALSE 0.182 88 0
 3283080 3283081 FALSE 0.239 -97 0
 3283081 3283082 FALSE 0.285 -51 0
 3283082 3283083 FALSE 0.304 52 0
 3283083 3283084 FALSE 0.143 92 -0.309
 3283084 3283085 TRUE 0.999 -3 170.565
 3283085 3283086 TRUE 0.515 339 157.463
 3283086 3283087 TRUE 0.855 21 -0.683
 3283090 3283091 FALSE 0.465 -172 0.21
 3283091 3283092 TRUE 0.91 7 0.21
 3283093 3283094 TRUE 0.998 -3 331.364
 3283094 3283095 TRUE 0.963 -3 0.21
 3283095 3283096 TRUE 0.966 0 0.21
 3283096 3283097 TRUE 0.839 14 0.554
 3283097 3283098 TRUE 0.995 7 268.545
 3283098 3283099 TRUE 0.99 24 440.566
 3283099 3283100 FALSE 0.242 60 -0.169
 3283101 3283102 TRUE 0.997 6 105.696
 3283102 3283103 FALSE 0.057 149 -1.115
 3283106 3283107 FALSE 0.025 194 0
 3283108 3283109 TRUE 0.657 -9 0
 3283110 3283111 FALSE 0.113 196 0
 3283111 3283112 FALSE 0.128 113 0
 3283112 3283113 FALSE 0.013 333 0
 3283113 3283114 TRUE 0.999 9 399.97
 3283114 3283115 TRUE 1 -3 323.229
 3283115 3283116 FALSE 0.062 131 -2.38
 3283116 3283117 FALSE 0.205 94 -1.148
 3283117 3283118 FALSE 0.12 102 0
 3283118 3283119 FALSE 0.089 109 -0.073
 3283119 3283120 TRUE 0.99 11 105.455
 3283120 3283121 FALSE 0.121 114 -2.337
 3283122 3283123 FALSE 0.349 112 0.554
 3283123 3283124 FALSE 0.026 202 0
 3283124 3283125 TRUE 0.945 6 0.554
 3283126 3283127 FALSE 0.01 318 -2.935
 3283129 3283130 FALSE 0.189 99 -0.603
 3283130 3283131 TRUE 0.613 55 0.21
 3283131 3283132 TRUE 0.547 54 0.21
 3283132 3283133 FALSE 0.077 182 0.21
 3283133 3283134 TRUE 0.995 -7 334.738
 3283134 3283135 FALSE 0.259 102 -14.287
 3283139 3283140 TRUE 0.714 40 -0.516
 3283140 3283141 TRUE 0.994 -15 563.219
 3283141 3283142 FALSE 0.074 122 0
 3283142 3283143 TRUE 0.898 -3 0
 3283144 3283145 TRUE 1 -3 498.34
 3283145 3283146 FALSE 0.349 90 0.21
 3283146 3283147 FALSE 0.237 109 0.21
 3283147 3283148 FALSE 0.031 174 0
 3283148 3283149 TRUE 0.898 -3 0
 3283149 3283150 FALSE 0.306 149 0.21
 3283150 3283151 TRUE 0.69 45 0.554
 3283151 3283152 TRUE 0.839 14 0.554
 3283153 3283154 FALSE 0.253 97 -4.041
 3283154 3283155 FALSE 0.138 97 0
 3283156 3283157 TRUE 0.939 -13 37.736
 3283159 3283160 TRUE 0.996 -3 14.827
 3283160 3283161 FALSE 0.297 53 0
 3283163 3283164 FALSE 0.004 1092 0
 3283164 3283165 TRUE 0.975 7 66.594
 3283165 3283166 TRUE 0.983 -3 36.808
 3283167 3283168 FALSE 0.004 762 0
 3283169 3283170 FALSE 0.409 27 0
 3283170 3283171 FALSE 0.013 268 0
 3283171 3283172 FALSE 0.003 1559 0
 3283172 3283173 FALSE 0.023 200 0
 3283173 3283174 TRUE 0.82 5 0
 3283175 3283176 TRUE 0.899 -7 0.297
 3283177 3283178 FALSE 0.018 228 0
 3283179 3283180 TRUE 0.572 -37 0.21
 3283180 3283181<