VIMSS Operon Predictions for Arthrobacter aurescens TC1

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

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 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 1806741 1806742 AAur_0001 AAur_0002 dnaA dnaN FALSE 0.183 576 688.454
 1806742 1806743 AAur_0002 AAur_0003 dnaN TRUE 0.773 42 1.829
 1806743 1806744 AAur_0003 AAur_0004 TRUE 0.85 24 5.161
 1806744 1806745 AAur_0004 AAur_0005 TRUE 0.961 -13 33.885
 1806745 1806746 AAur_0005 AAur_0006 gyrB FALSE 0.099 338 29.243
 1806746 1806747 AAur_0006 AAur_0007 gyrB gyrA TRUE 0.978 63 288.543
 1806747 1806748 AAur_0007 AAur_0008 gyrA TRUE 0.981 -3 20.392
 1806748 1806749 AAur_0008 AAur_0009 FALSE 0.112 114 0
 1806749 1806750 AAur_0009 AAur_0010 FALSE 0.275 42 0
 1806750 1806751 AAur_0010 AAur_0011 FALSE 0.177 71 0
 1806751 1806752 AAur_0011 AAur_0012 FALSE 0.113 113 0
 1806753 1806754 AAur_0013 AAur_0014 FALSE 0.208 145 0.249
 1806755 1806756 AAur_0015 AAur_0017 TRUE 0.803 22 5.063
 1806759 1806760 AAur_0019 AAur_0020 FALSE 0.393 105 -8.787
 1806760 1806761 AAur_0020 AAur_0021 TRUE 0.956 -3 -0.354
 1806761 1806762 AAur_0021 AAur_0022 TRUE 0.664 78 12.829
 1806762 1806763 AAur_0022 AAur_0023 FALSE 0.24 15 -1.139
 1806763 1806764 AAur_0023 AAur_0024 FALSE 0.259 46 0
 1806765 1806766 AAur_0025 AAur_0026 TRUE 0.95 4 7.188
 1806766 1806767 AAur_0026 AAur_0027 TRUE 0.967 -3 2.495
 1806768 1806769 AAur_0028 AAur_0029 TRUE 0.973 11 8.98
 1806769 1806770 AAur_0029 AAur_0030 TRUE 0.984 -3 9.364
 1806770 1806771 AAur_0030 AAur_0031 TRUE 0.996 -3 75.755
 1806771 1806772 AAur_0031 AAur_0032 TRUE 0.988 -3 9.364
 1806772 1806773 AAur_0032 AAur_0033 TRUE 0.816 61 13.961
 1806773 1806774 AAur_0033 AAur_0034 TRUE 0.995 -3 43.184
 1806776 1806777 AAur_0036 AAur_0037 clcB TRUE 0.938 11 6.591
 1806780 1806781 AAur_0040 AAur_0041 TRUE 0.83 -3 0
 1806783 1806784 AAur_0043 AAur_0044 puo FALSE 0.076 91 -4.757
 1806784 1806785 AAur_0044 AAur_0045 TRUE 0.798 24 3.049
 1806791 1806792 AAur_0051 AAur_0052 TRUE 0.532 48 0.249
 1806792 1806793 AAur_0052 AAur_0053 TRUE 0.854 7 0.249
 1806793 1806794 AAur_0053 AAur_0054 TRUE 0.967 8 30.404
 1806797 1806798 AAur_0057 AAur_0058 FALSE 0.368 107 -5.386
 1806798 1806799 AAur_0058 AAur_0059 FALSE 0.204 23 -0.413
 1806800 1806801 AAur_0060 AAur_0061 FALSE 0.11 40 -2.507
 1806804 1806805 AAur_0063 AAur_0065 TRUE 0.832 -3 0
 1806805 1806806 AAur_0065 AAur_0066 FALSE 0.118 109 0
 1806809 1806810 AAur_0069 AAur_0070 FALSE 0.034 143 -2.935
 1806812 1806813 AAur_0072 AAur_0073 FALSE 0.009 382 0
 1806814 1806815 AAur_0074 AAur_0075 FALSE 0.194 64 0
 1806815 1806816 AAur_0075 AAur_0076 TRUE 0.83 -3 0
 1806816 1806817 AAur_0076 AAur_0077 FALSE 0.012 309 0
 1806817 1806818 AAur_0077 AAur_0078 FALSE 0.172 74 0
 1806822 1806823 AAur_0082 AAur_0083 FALSE 0.002 818 -3.856
 1806823 1806824 AAur_0083 AAur_0084 FALSE 0.113 52 -0.86
 1806824 1806825 AAur_0084 AAur_0085 bglA TRUE 0.835 45 1.197
 1806825 1806826 AAur_0085 AAur_0086 bglA TRUE 0.997 0 32.052
 1806826 1806827 AAur_0086 AAur_0087 TRUE 0.998 -3 55.679
 1806827 1806828 AAur_0087 AAur_0088 TRUE 0.954 64 31.473
 1806830 1806831 AAur_0090 AAur_0091 ncs2 FALSE 0.053 75 -1.512
 1806832 1806833 AAur_0092 AAur_0093 FALSE 0.066 243 0.249
 1806834 1806835 AAur_0094 AAur_0095 pgm FALSE 0.019 185 -7.44
 1806837 1806838 AAur_0097 AAur_0098 FALSE 0.344 28 0
 1806838 1806839 AAur_0098 AAur_0099 FALSE 0.233 53 0
 1806840 1806841 AAur_0100 AAur_0101 pheA FALSE 0.152 33 -7.056
 1806845 1806846 AAur_0105 AAur_0106 FALSE 0.294 39 -0.361
 1806846 1806847 AAur_0106 AAur_0107 FALSE 0.148 79 -0.218
 1806851 1806852 AAur_0111 AAur_0112 TRUE 0.992 -3 36.855
 1806852 1806853 AAur_0112 AAur_0113 TRUE 0.991 -3 12.258
 1806853 1806854 AAur_0113 AAur_0114 TRUE 0.993 -3 8.422
 1806854 1806855 AAur_0114 AAur_0115 gmhA TRUE 0.777 57 2.696
 1806855 1806856 AAur_0115 AAur_0116 gmhA rfaE TRUE 0.986 -3 3.744
 1806856 1806857 AAur_0116 AAur_0118 rfaE TRUE 0.878 32 2.869
 1806859 1806860 AAur_0119 AAur_0120 TRUE 0.834 11 -0.658
 1806862 1806863 AAur_0122 AAur_0123 TRUE 0.967 -3 2.455
 1806863 1806864 AAur_0123 AAur_0124 TRUE 0.97 -3 3.49
 1806865 1806866 AAur_0125 AAur_0126 FALSE 0.21 59 0
 1806866 1806867 AAur_0126 AAur_0127 TRUE 0.655 -13 0
 1806867 1806868 AAur_0127 AAur_0128 FALSE 0.251 48 0
 1806868 1806869 AAur_0128 AAur_0129 TRUE 0.83 -3 0
 1806869 1806870 AAur_0129 AAur_0130 ppa FALSE 0.03 200 0
 1806871 1806872 AAur_0131 AAur_0132 dacB TRUE 0.768 61 32.54
 1806872 1806873 AAur_0132 AAur_0133 TRUE 0.643 93 21.072
 1806873 1806874 AAur_0133 AAur_0134 hpt TRUE 0.94 32 31.835
 1806878 1806879 AAur_0138 AAur_0139 folE TRUE 0.971 10 23.221
 1806879 1806880 AAur_0139 AAur_0140 folE folP TRUE 0.995 6 75.365
 1806880 1806881 AAur_0140 AAur_0141 folP folB TRUE 0.991 13 246.904
 1806881 1806882 AAur_0141 AAur_0142 folB folK TRUE 0.999 -3 228.054
 1806882 1806883 AAur_0142 AAur_0143 folK TRUE 0.984 -3 31.093
 1806883 1806884 AAur_0143 AAur_0144 TRUE 0.816 -19 0.052
 1806884 1806885 AAur_0144 AAur_0145 TRUE 0.994 -3 37.969
 1806885 1806886 AAur_0145 AAur_0146 FALSE 0.468 -7 -0.326
 1806886 1806887 AAur_0146 AAur_0147 panC TRUE 0.988 6 48.5
 1806887 1806888 AAur_0147 AAur_0148 panC lmrB FALSE 0.067 106 -13.658
 1806890 1806891 AAur_0150 AAur_0151 rrsA rrlA FALSE 0.006 597 0
 1806891 1806892 AAur_0151 AAur_0152 rrlA rrfA FALSE 0.068 147 0
 1806893 1806894 AAur_0153 AAur_0154 FALSE 0.259 46 0
 1806895 1806896 AAur_0155 AAur_0156 rrsB rrlB FALSE 0.006 597 0
 1806896 1806897 AAur_0156 AAur_0157 rrlB rrfB FALSE 0.072 144 0
 1806899 1806900 AAur_0159 AAur_0160 TRUE 0.835 -3 -0.079
 1806901 1806902 AAur_0161 AAur_0162 FALSE 0.451 64 0.249
 1806902 1806903 AAur_0162 AAur_0163 TRUE 0.81 10 0.249
 1806904 1806905 AAur_0164 AAur_0165 lysS TRUE 0.906 3 0.249
 1806905 1806906 AAur_0165 AAur_0166 FALSE 0.237 132 0.249
 1806906 1806907 AAur_0166 AAur_0167 FALSE 0.073 353 13.022
 1806907 1806908 AAur_0167 AAur_0168 FALSE 0.094 80 -9.226
 1806908 1806909 AAur_0168 AAur_0169 FALSE 0.084 70 -2.675
 1806909 1806910 AAur_0169 AAur_0170 FALSE 0.171 176 -2.43
 1806910 1806911 AAur_0170 AAur_0171 mcrA FALSE 0.02 171 -2.234
 1806911 1806912 AAur_0171 AAur_0172 mcrA TRUE 0.515 11 0
 1806912 1806913 AAur_0172 AAur_0173 dhaK FALSE 0.066 148 0
 1806913 1806914 AAur_0173 AAur_0174 dhaK dhaK2 TRUE 0.997 3 321.836
 1806914 1806915 AAur_0174 AAur_0175 dhaK2 TRUE 0.988 -3 5.672
 1806915 1806916 AAur_0175 AAur_0176 FALSE 0.369 24 0
 1806916 1806917 AAur_0176 AAur_0177 FALSE 0.137 96 0
 1806917 1806918 AAur_0177 AAur_0178 TRUE 0.698 4 0
 1806920 1806921 AAur_0180 AAur_0181 FALSE 0.049 164 0
 1806922 1806923 AAur_0182 AAur_0183 FALSE 0.049 137 0.249
 1806925 1806926 AAur_0185 AAur_0186 atzF FALSE 0.01 235 -4.299
 1806926 1806927 AAur_0186 AAur_0187 atzF uca TRUE 0.995 -3 76.642
 1806927 1806928 AAur_0187 AAur_0188 uca TRUE 0.994 -3 110.205
 1806928 1806929 AAur_0188 AAur_0189 TRUE 0.994 -3 43.372
 1806929 1806930 AAur_0189 AAur_0190 TRUE 0.682 54 4.608
 1806932 1806933 AAur_0191 AAur_0193 radA FALSE 0.088 56 -5.777
 1806933 1806934 AAur_0193 AAur_0194 radA FALSE 0.126 40 -5.3
 1806935 1806936 AAur_0195 AAur_0196 pstS pstC TRUE 0.848 210 243.085
 1806936 1806937 AAur_0196 AAur_0197 pstC pstA TRUE 0.999 1 657.995
 1806937 1806938 AAur_0197 AAur_0198 pstA pstB TRUE 0.978 69 721.723
 1806939 1806940 AAur_0199 AAur_0200 TRUE 0.976 2 3.72
 1806943 1806944 AAur_0203 AAur_0205 abfA FALSE 0.024 224 0
 1806945 1806946 AAur_0204 AAur_0206 FALSE 0.118 109 0
 1806946 1806947 AAur_0206 AAur_0207 TRUE 0.515 11 0
 1806947 1806948 AAur_0207 AAur_0208 FALSE 0.095 125 0
 1806948 1806949 AAur_0208 AAur_0209 FALSE 0.486 12 0
 1806949 1806950 AAur_0209 AAur_0210 TRUE 0.635 -16 0
 1806951 1806952 AAur_0211 AAur_0212 FALSE 0.312 35 -0.436
 1806954 1806955 AAur_0214 AAur_0215 ureA ureB TRUE 0.996 9 497.565
 1806955 1806956 AAur_0215 AAur_0216 ureB ureC TRUE 0.999 -3 484.899
 1806956 1806957 AAur_0216 AAur_0217 ureC ureE TRUE 0.984 9 121.909
 1806957 1806958 AAur_0217 AAur_0218 ureE ureF TRUE 0.789 199 172.832
 1806958 1806959 AAur_0218 AAur_0219 ureF ureG TRUE 0.99 22 525.693
 1806959 1806960 AAur_0219 AAur_0220 ureG ureD TRUE 0.842 162 96.564
 1806960 1806961 AAur_0220 AAur_0222 ureD TRUE 0.974 0 -0.446
 1806965 1806966 AAur_0225 AAur_0226 TRUE 0.83 -3 0
 1806967 1806968 AAur_0227 AAur_0228 FALSE 0.343 24 -2.173
 1806968 1806969 AAur_0228 AAur_0229 FALSE 0.46 64 0.169
 1806969 1806970 AAur_0229 AAur_0230 FALSE 0.119 186 0.149
 1806970 1806971 AAur_0230 AAur_0231 TRUE 0.736 25 0.249
 1806973 1806974 AAur_0233 AAur_0234 FALSE 0.037 110 -1.046
 1806976 1806977 AAur_0236 AAur_0237 TRUE 0.957 2 0
 1806977 1806978 AAur_0237 AAur_0238 TRUE 0.676 51 0
 1806978 1806979 AAur_0238 AAur_0239 TRUE 0.988 10 14.674
 1806979 1806980 AAur_0239 AAur_0240 FALSE 0.306 34 0
 1806981 1806982 AAur_0241 AAur_0242 TRUE 0.651 6 0
 1806982 1806983 AAur_0242 AAur_0243 TRUE 0.85 -3 0
 1806984 1806985 AAur_0244 AAur_0245 TRUE 0.954 -3 2.385
 1806985 1806986 AAur_0245 AAur_0246 TRUE 0.966 8 14.027
 1806986 1806987 AAur_0246 AAur_0247 FALSE 0.199 25 -0.312
 1806987 1806988 AAur_0247 AAur_0248 TRUE 0.723 28 1.315
 1806988 1806989 AAur_0248 AAur_0249 TRUE 0.873 45 36.266
 1806989 1806990 AAur_0249 AAur_0250 FALSE 0.097 124 0
 1806992 1806993 AAur_0252 AAur_0253 FALSE 0.079 75 -0.798
 1806994 1806995 AAur_0254 AAur_0255 TRUE 0.67 41 0.954
 1806995 1806996 AAur_0255 AAur_0256 FALSE 0.361 184 -1.227
 1806996 1806997 AAur_0256 AAur_0257 TRUE 0.981 0 0.249
 1806997 1806998 AAur_0257 AAur_0259 FALSE 0.105 52 -0.027
 1807000 1807001 AAur_0260 AAur_0261 TRUE 0.943 -3 0.249
 1807003 1807004 AAur_0263 AAur_0264 FALSE 0.043 185 0
 1807006 1807007 AAur_0266 AAur_0267 TRUE 0.993 -3 33.641
 1807007 1807008 AAur_0267 AAur_0268 TRUE 0.993 -3 73.142
 1807008 1807009 AAur_0268 AAur_0269 TRUE 0.993 -3 54.071
 1807011 1807012 AAur_0271 AAur_0272 FALSE 0.149 89 0
 1807014 1807015 AAur_0274 AAur_0275 TRUE 0.83 -3 0
 1807016 1807017 AAur_0276 AAur_0277 TRUE 0.527 10 -0.364
 1807017 1807018 AAur_0277 AAur_0278 FALSE 0.415 8 -3.97
 1807020 1807021 AAur_0280 AAur_0281 proP FALSE 0.006 288 -2.757
 1807025 1807026 AAur_0285 AAur_0286 FALSE 0.086 52 -2.46
 1807026 1807027 AAur_0286 AAur_0287 TRUE 0.567 -66 0
 1807027 1807028 AAur_0287 AAur_0288 FALSE 0.013 297 0
 1807029 1807030 AAur_0289 AAur_0290 FALSE 0.134 45 -3.503
 1807030 1807031 AAur_0290 AAur_0291 FALSE 0.053 88 -0.312
 1807031 1807032 AAur_0291 AAur_0292 TRUE 0.972 7 19.027
 1807033 1807034 AAur_0293 AAur_0294 TRUE 0.805 75 -12.622
 1807034 1807035 AAur_0294 AAur_0295 fruK TRUE 0.998 -3 86.643
 1807035 1807036 AAur_0295 AAur_0296 fruK TRUE 0.992 -3 10.328
 1807036 1807037 AAur_0296 AAur_0297 FALSE 0.007 467 0
 1807037 1807038 AAur_0297 AAur_0298 FALSE 0.436 15 0
 1807039 1807040 AAur_0299 AAur_0300 FALSE 0.002 703 -0.955
 1807041 1807042 AAur_0301 AAur_0302 TRUE 0.952 20 20.73
 1807043 1807044 AAur_0303 AAur_0304 FALSE 0.111 188 0.249
 1807044 1807045 AAur_0304 AAur_0305 TRUE 0.589 9 0
 1807045 1807046 AAur_0305 AAur_0306 FALSE 0.313 32 0
 1807047 1807048 AAur_0307 AAur_0308 FALSE 0.031 198 0
 1807048 1807049 AAur_0308 AAur_0309 FALSE 0.149 89 0