VIMSS Operon Predictions for Brucella melitensis

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 178796 178797 BMEI0001 BMEI0002 TRUE 0.595 69 1.928
 178797 178798 BMEI0002 BMEI0003 FALSE 0.335 382 51.046
 178799 178800 BMEI0004 BMEI0005 FALSE 0.164 128 0
 178801 178802 BMEI0006 BMEI0007 TRUE 0.951 161 442.087
 178802 178803 BMEI0007 BMEI0008 TRUE 0.996 -3 351.268
 178803 178804 BMEI0008 BMEI0009 TRUE 0.992 14 372.682
 178804 178805 BMEI0009 BMEI0010 TRUE 0.989 44 1152.923
 178806 178807 BMEI0011 BMEI0012 FALSE 0.053 162 -7.277
 178807 178808 BMEI0012 BMEI0013 TRUE 0.995 -3 383.416
 178811 178812 BMEI0016 BMEI0017 TRUE 0.837 -3 0.012
 178814 178815 BMEI0019 BMEI0020 TRUE 0.827 -21 0.626
 178815 178816 BMEI0020 BMEI0021 TRUE 0.955 6 10.271
 178816 178817 BMEI0021 BMEI0022 TRUE 0.944 2 0
 178817 178818 BMEI0022 BMEI0023 TRUE 0.94 -55 0
 178818 178819 BMEI0023 BMEI0024 TRUE 0.718 -6 0
 178819 178820 BMEI0024 BMEI0025 TRUE 0.774 13 -9.132
 178820 178821 BMEI0025 BMEI0026 TRUE 0.818 -141 7.768
 178821 178822 BMEI0026 BMEI0027 TRUE 0.608 -34 0
 178822 178823 BMEI0027 BMEI0028 TRUE 0.745 -106 0
 178823 178824 BMEI0028 BMEI0029 TRUE 0.951 7 0
 178825 178826 BMEI0030 BMEI0031 FALSE 0.148 150 0
 402771 178828 BMEI0033 tRNA-Arg FALSE 0.176 114 0
 178828 178829 BMEI0033 BMEI0034 TRUE 0.881 55 0
 178830 178831 BMEI0035 BMEI0036 TRUE 0.941 2 6.769
 178832 178833 BMEI0037 BMEI0038 TRUE 0.815 -21 1.973
 178833 178834 BMEI0038 BMEI0039 FALSE 0.215 222 13.865
 178834 178835 BMEI0039 BMEI0040 TRUE 0.63 139 9.876
 178835 178836 BMEI0040 BMEI0041 TRUE 0.905 0 2.001
 178837 178838 BMEI0042 BMEI0043 TRUE 0.988 93 736.935
 178838 178839 BMEI0043 BMEI0044 TRUE 0.676 64 -0.324
 178841 178842 BMEI0046 BMEI0047 TRUE 0.837 -3 0.012
 178842 178843 BMEI0047 BMEI0048 TRUE 0.71 -6 0.003
 178843 178844 BMEI0048 BMEI0049 FALSE 0.358 54 0.003
 178844 178845 BMEI0049 BMEI0050 TRUE 0.969 108 86.139
 178846 178847 BMEI0051 BMEI0052 TRUE 0.603 27 0.012
 178847 178848 BMEI0052 BMEI0053 FALSE 0.002 407 -0.418
 178851 178852 BMEI0056 BMEI0057 TRUE 0.697 80 11.478
 178853 178854 BMEI0058 BMEI0059 FALSE 0.016 805 0
 178855 178856 BMEI0060 BMEI0061 TRUE 0.658 9 0
 178856 178857 BMEI0061 BMEI0062 FALSE 0.027 434 0
 178857 178858 BMEI0062 BMEI0063 FALSE 0.024 470 0
 178859 178860 BMEI0064 BMEI0065 FALSE 0.419 61 0.012
 178861 178862 BMEI0066 BMEI0067 TRUE 0.936 35 18.751
 178863 178864 BMEI0068 BMEI0069 TRUE 0.803 40 9.595
 178864 178865 BMEI0069 BMEI0070 FALSE 0.001 474 -8.263
 178866 178867 BMEI0071 BMEI0072 FALSE 0.004 309 0.003
 178867 178868 BMEI0072 BMEI0073 TRUE 0.995 -7 122.359
 178868 178869 BMEI0073 BMEI0074 TRUE 0.552 147 12.182
 178869 178870 BMEI0074 BMEI0075 TRUE 0.692 59 7.031
 178870 178871 BMEI0075 BMEI0076 FALSE 0.01 153 -19.627
 178871 402732 BMEI0076 tRNA-Ala FALSE 0.017 663 0
 178874 178875 BMEI0079 BMEI0080 TRUE 0.998 5 183.801
 178875 178876 BMEI0080 BMEI0081 FALSE 0.443 -3 -7.636
 178878 178879 BMEI0083 BMEI0084 FALSE 0.338 330 41.193
 178879 178880 BMEI0084 BMEI0085 FALSE 0.43 28 0
 178880 178881 BMEI0085 BMEI0086 FALSE 0.497 21 0
 178883 178884 BMEI0088 BMEI0089 FALSE 0.061 18 -17.426
 178885 178886 BMEI0090 BMEI0091 FALSE 0.276 99 0.009
 178886 178887 BMEI0091 BMEI0092 TRUE 0.613 -40 0.009
 178888 178889 BMEI0093 BMEI0094 TRUE 0.898 -58 12.666
 178889 178890 BMEI0094 BMEI0095 TRUE 0.985 0 33.677
 178891 178892 BMEI0096 BMEI0097 TRUE 0.998 36 875.943
 178892 178893 BMEI0097 BMEI0098 FALSE 0.18 111 0
 178893 178894 BMEI0098 BMEI0099 FALSE 0.147 152 0
 178894 178895 BMEI0099 BMEI0100 FALSE 0.189 160 0.006
 178897 178898 BMEI0102 BMEI0103 FALSE 0.112 180 -0.989
 178900 178901 BMEI0105 BMEI0106 FALSE 0.426 70 6.847
 178902 178903 BMEI0107 BMEI0108 TRUE 0.974 9 4.314
 178903 178904 BMEI0108 BMEI0109 TRUE 0.915 -16 -1.938
 178904 178905 BMEI0109 BMEI0110 TRUE 0.907 9 -0.7
 178905 178906 BMEI0110 BMEI0111 TRUE 0.923 21 2.59
 178906 178907 BMEI0111 BMEI0112 TRUE 0.973 -3 3.546
 178907 178908 BMEI0112 BMEI0113 TRUE 0.982 5 0
 178908 178909 BMEI0113 BMEI0114 FALSE 0.311 50 0
 178909 178910 BMEI0114 BMEI0115 FALSE 0.187 106 0
 178911 178912 BMEI0116 BMEI0117 FALSE 0.259 148 0.012
 402770 178913 BMEI0118 tRNA-Leu FALSE 0.017 636 0
 178913 178914 BMEI0118 BMEI0119 FALSE 0.181 169 0.006
 178917 178918 BMEI0122 BMEI0123 FALSE 0.164 128 0
 178918 178919 BMEI0123 BMEI0124 FALSE 0.345 438 50.584
 178919 178920 BMEI0124 BMEI0125 TRUE 0.547 91 3.423
 178920 178921 BMEI0125 BMEI0126 TRUE 0.923 -3 3.65
 178921 178922 BMEI0126 BMEI0127 FALSE 0.072 193 1.232
 178923 178924 BMEI0128 BMEI0129 FALSE 0.278 86 0.006
 178924 178925 BMEI0129 BMEI0130 FALSE 0.426 33 -28.418
 178925 178926 BMEI0130 BMEI0131 TRUE 0.784 60 23.228
 178926 178927 BMEI0131 BMEI0132 FALSE 0.056 475 10.065
 178927 178928 BMEI0132 BMEI0133 TRUE 0.963 -60 92.971
 178929 178930 BMEI0134 BMEI0135 FALSE 0.278 129 0.012
 178930 178931 BMEI0135 BMEI0136 TRUE 0.584 72 5.441
 178931 178932 BMEI0136 BMEI0137 FALSE 0.043 421 8.124
 178932 178933 BMEI0137 BMEI0138 TRUE 0.93 107 66.443
 178933 178934 BMEI0138 BMEI0139 TRUE 1 4 1344.944
 178934 178935 BMEI0139 BMEI0140 TRUE 0.857 276 45.827
 178935 178936 BMEI0140 BMEI0141 TRUE 0.992 62 1027.96
 178936 178937 BMEI0141 BMEI0142 TRUE 0.887 10 19.251
 178937 178938 BMEI0142 BMEI0143 FALSE 0.187 42 -0.956
 178938 178939 BMEI0143 BMEI0144 FALSE 0.447 71 1.973
 178939 178940 BMEI0144 BMEI0145 FALSE 0.024 169 2.467
 178941 178942 BMEI0146 BMEI0147 FALSE 0.261 195 -1.685
 178943 178944 BMEI0148 BMEI0149 TRUE 0.999 6 1236.215
 178946 178947 BMEI0151 BMEI0152 TRUE 0.971 -3 24.644
 178947 178948 BMEI0152 BMEI0153 TRUE 0.858 -31 4.48
 178948 178949 BMEI0153 BMEI0154 TRUE 0.775 -3 0.003
 178951 178952 BMEI0156 BMEI0157 FALSE 0.219 211 2.147
 178952 178953 BMEI0157 BMEI0158 FALSE 0.047 257 -3.124
 178953 178954 BMEI0158 BMEI0159 FALSE 0.002 345 -0.019
 178954 178955 BMEI0159 BMEI0160 TRUE 0.999 23 339.388
 178955 178956 BMEI0160 BMEI0161 TRUE 0.999 -43 347.02
 178956 178957 BMEI0161 BMEI0162 TRUE 0.999 16 915.335
 178961 178962 BMEI0166 BMEI0167 TRUE 0.693 223 122.354
 178962 178963 BMEI0167 BMEI0168 FALSE 0.087 270 -9.069
 178966 178967 BMEI0171 BMEI0172 TRUE 0.939 0 8.599
 178967 178968 BMEI0172 BMEI0173 TRUE 0.966 13 43.297
 178968 178969 BMEI0173 BMEI0174 TRUE 0.966 2 30.409
 178969 178970 BMEI0174 BMEI0175 TRUE 0.985 -3 32.566
 178971 178972 BMEI0176 BMEI0177 TRUE 0.991 24 158.62
 178972 178973 BMEI0177 BMEI0178 FALSE 0.015 926 0
 178973 178974 BMEI0178 BMEI0179 TRUE 0.68 7 0
 178974 178975 BMEI0179 BMEI0180 FALSE 0.002 416 -0.383
 178976 178977 BMEI0181 BMEI0182 FALSE 0.061 139 -11.949
 178978 178979 BMEI0183 BMEI0184 TRUE 0.908 72 51.709
 178979 178980 BMEI0184 BMEI0185 TRUE 0.981 11 48.159
 178980 178981 BMEI0185 BMEI0186 TRUE 0.971 6 28.893
 178981 178982 BMEI0186 BMEI0187 FALSE 0.07 28 -5.535
 178984 178985 BMEI0189 BMEI0190 TRUE 0.518 328 39.468
 178985 178986 BMEI0190 BMEI0191 TRUE 0.745 143 -5.233
 178986 178987 BMEI0191 BMEI0192 TRUE 0.999 -3 1136.973
 178987 178988 BMEI0192 BMEI0193 FALSE 0.216 192 0.012
 178988 178989 BMEI0193 BMEI0194 TRUE 0.741 -19 0.012
 178989 178990 BMEI0194 BMEI0195 FALSE 0.073 28 -0.5
 178990 178991 BMEI0195 BMEI0196 FALSE 0.007 1040 -2.04
 2209643 402733 tRNA-Ile FALSE 0.042 335 0
 402733 402734 tRNA-Ile tRNA-Ala TRUE 0.578 14 0
 402734 2209644 tRNA-Ala FALSE 0.047 322 0
 2209644 2209645 FALSE 0.313 -2811 0
 2209645 2209646 FALSE 0.114 204 0
 2209646 402735 tRNA-Met FALSE 0.187 106 0
 402735 178993 BMEI0198 tRNA-Met FALSE 0.022 511 0
 178993 178994 BMEI0198 BMEI0199 FALSE 0.232 176 0.012
 178995 402769 BMEI0200 tRNA-Ser FALSE 0.159 133 0
 178996 178997 BMEI0201 BMEI0202 TRUE 0.946 94 16.959
 178997 178998 BMEI0202 BMEI0203 FALSE 0.393 217 0
 178998 178999 BMEI0203 BMEI0204 FALSE 0.074 263 0
 178999 179000 BMEI0204 BMEI0205 FALSE 0.001 523 0.006
 179000 179001 BMEI0205 BMEI0206 FALSE 0.186 175 0.006
 179001 179002 BMEI0206 BMEI0207 TRUE 0.985 28 379.571
 179002 179003 BMEI0207 BMEI0208 TRUE 0.999 13 603.801
 179003 179004 BMEI0208 BMEI0209 TRUE 0.992 0 69.068
 179004 179005 BMEI0209 BMEI0210 FALSE 0.388 64 2.584
 179005 179006 BMEI0210 BMEI0211 TRUE 0.926 19 16.458
 179006 179007 BMEI0211 BMEI0212 FALSE 0.292 118 -0.034
 179007 179008 BMEI0212 BMEI0213 FALSE 0.299 113 -0.034
 179008 179009 BMEI0213 BMEI0214 TRUE 0.996 -10 222.392
 179009 179010 BMEI0214 BMEI0215 FALSE 0.424 199 -3.442
 179010 179011 BMEI0215 BMEI0216 FALSE 0.012 116 -10.095
 179011 179012 BMEI0216 BMEI0217 FALSE 0.086 68 -3.531
 179014 179015 BMEI0219 BMEI0220 FALSE 0.007 214 0.012
 179015 179016 BMEI0220 BMEI0221 TRUE 0.855 2 0.012
 179016 179017 BMEI0221 BMEI0222 FALSE 0.089 174 -1.551
 179018 179019 BMEI0223 BMEI0224 TRUE 0.857 0 0.012
 179020 179021 BMEI0225 BMEI0226 TRUE 0.922 6 0.333
 179021 179022 BMEI0226 BMEI0227 TRUE 0.635 101 12.776
 179022 179023 BMEI0227 BMEI0228 FALSE 0.004 270 -16.928
 179023 179024 BMEI0228 BMEI0229 TRUE 0.954 87 383.628
 179024 179025 BMEI0229 BMEI0230 TRUE 0.982 13 100.374
 179025 179026 BMEI0230 BMEI0231 FALSE 0.012 265 -4.931
 179026 179027 BMEI0231 BMEI0232 FALSE 0.146 142 0.997
 179028 179029 BMEI0233 BMEI0234 TRUE 0.825 107 55.494
 179029 179030 BMEI0234 BMEI0235 TRUE 0.737 148 50.137
 179030 179031 BMEI0235 BMEI0236 FALSE 0.409 139 90.968
 179034 179035 BMEI0239 BMEI0240 FALSE 0.237 71 0
 179037 179038 BMEI0242 BMEI0243 TRUE 0.588 146 15.886
 179040 179041 BMEI0245 BMEI0246 FALSE 0.367 -157 0
 179041 179042 BMEI0246 BMEI0247 FALSE 0.167 124 0
 179042 179043 BMEI0247 BMEI0248 FALSE 0.219 282 5.581
 179043 179044 BMEI0248 BMEI0249 TRUE 1 0 1341.741
 179044 179045 BMEI0249 BMEI0250 TRUE 0.999 22 1772.688
 179045 179046 BMEI0250 BMEI0251 TRUE 0.997 128 1556.022
 179046 179047 BMEI0251 BMEI0252 TRUE 0.997 125 1296.544
 179047 179048 BMEI0252 BMEI0253 FALSE 0.01 370 -9.436
 179049 179050 BMEI0254 BMEI0255 FALSE 0.388 56 0.009
 179051 179052 BMEI0256 BMEI0257 TRUE 0.993 6 39.871
 179052 179053 BMEI0257 BMEI0258 FALSE 0.23 279 -1.626
 179053 179054 BMEI0258 BMEI0259 TRUE 0.999 3 316.347
 179054 179055 BMEI0259 BMEI0260 TRUE 0.956 0 0.006
 179055 179056 BMEI0260 BMEI0261 TRUE 0.979 -3 0
 179