VIMSS Operon Predictions for Aurantimonas sp. SI85-9A1

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 2867217 2867218 SI859A1_01739 SI859A1_01740 TRUE 0.966 -3 18.636
 2867218 2867219 SI859A1_01740 SI859A1_01741 TRUE 0.898 15 13.569
 2867219 2867220 SI859A1_01741 SI859A1_01742 TRUE 0.977 4 24.216
 2867220 2867221 SI859A1_01742 SI859A1_01743 TRUE 0.914 37 24.019
 2867223 2867224 SI859A1_01745 SI859A1_01746 FALSE 0.019 606 0
 2867224 2867225 SI859A1_01746 SI859A1_01747 FALSE 0.03 264 0
 2867226 2867227 SI859A1_01748 SI859A1_01749 FALSE 0.074 68 -3.413
 2867227 2867228 SI859A1_01749 SI859A1_01750 FALSE 0.03 314 -0.114
 2867229 2867230 SI859A1_01751 SI859A1_01752 TRUE 0.981 11 48.984
 2867230 2867231 SI859A1_01752 SI859A1_01753 TRUE 0.972 4 46.759
 2867231 2867232 SI859A1_01753 SI859A1_01754 TRUE 0.933 215 158.978
 2867232 2867233 SI859A1_01754 SI859A1_01755 TRUE 0.967 170 372.178
 2867233 2867234 SI859A1_01755 SI859A1_01756 TRUE 0.995 11 414.767
 2867234 2867235 SI859A1_01756 SI859A1_01757 FALSE 0.042 542 0
 2867235 2867236 SI859A1_01757 SI859A1_01758 FALSE 0.035 186 0
 2867236 2867237 SI859A1_01758 SI859A1_01759 FALSE 0.04 149 0
 2867239 2867240 SI859A1_01761 SI859A1_01762 TRUE 0.98 -3 66.584
 2867242 2867243 SI859A1_01764 SI859A1_01765 FALSE 0.038 160 0
 2867243 2867244 SI859A1_01765 SI859A1_01766 FALSE 0.34 45 0.642
 2867244 2867245 SI859A1_01766 SI859A1_01767 TRUE 0.989 -13 58.353
 2867248 2867249 SI859A1_01770 SI859A1_01771 TRUE 0.832 18 22.598
 2867249 2867250 SI859A1_01771 SI859A1_01772 TRUE 0.813 46 10.739
 2867250 2867251 SI859A1_01772 SI859A1_01773 FALSE 0.024 396 0
 2867251 2867252 SI859A1_01773 SI859A1_01774 FALSE 0.311 11 0
 2867253 2867254 SI859A1_01775 SI859A1_01776 FALSE 0.359 7 0
 2867255 2867256 SI859A1_01777 SI859A1_01778 FALSE 0.167 31 0
 2867256 2867257 SI859A1_01778 SI859A1_01779 TRUE 0.941 2 34.477
 2867257 2867258 SI859A1_01779 SI859A1_01780 FALSE 0.007 226 -0.927
 2867261 2867262 SI859A1_01783 SI859A1_01784 FALSE 0.029 1084 0
 2867262 2867263 SI859A1_01784 SI859A1_01785 FALSE 0.06 611 -18.991
 2867263 2867264 SI859A1_01785 SI859A1_01786 FALSE 0.151 197 -7.225
 2867265 2867266 SI859A1_01787 SI859A1_t01788 FALSE 0.02 540 0
 2867266 2867267 SI859A1_t01788 SI859A1_01789 FALSE 0.035 189 0
 2867270 2867271 SI859A1_01792 SI859A1_01793 FALSE 0.139 50 -1.701
 2867271 2867272 SI859A1_01793 SI859A1_01794 TRUE 0.537 -3 -3.352
 2867272 2867273 SI859A1_01794 SI859A1_01795 FALSE 0.229 39 -0.073
 2867273 2867274 SI859A1_01795 SI859A1_01796 TRUE 0.957 -3 6.59
 2867274 2867275 SI859A1_01796 SI859A1_01797 TRUE 0.969 101 296.757
 2867276 2867277 SI859A1_01798 SI859A1_01799 TRUE 0.513 68 -2.068
 2867277 2867278 SI859A1_01799 SI859A1_01800 TRUE 0.69 9 -6.167
 2867278 2867279 SI859A1_01800 SI859A1_01801 FALSE 0.046 205 -3.384
 2867279 2867280 SI859A1_01801 SI859A1_01802 FALSE 0.417 1 0
 2867282 2867283 SI859A1_01804 SI859A1_01805 FALSE 0.023 423 0
 2867283 2867284 SI859A1_01805 SI859A1_01806 FALSE 0.181 28 0
 2867284 2867285 SI859A1_01806 SI859A1_01807 FALSE 0.268 15 0
 2867285 2867286 SI859A1_01807 SI859A1_01808 FALSE 0.475 308 5.534
 2867286 2867287 SI859A1_01808 SI859A1_01809 TRUE 0.792 35 16.352
 2867287 2867288 SI859A1_01809 SI859A1_01810 TRUE 0.993 -3 140.784
 2867288 2867289 SI859A1_01810 SI859A1_01811 TRUE 0.63 108 16
 2867289 2867290 SI859A1_01811 SI859A1_01812 TRUE 0.994 0 314.494
 2867290 2867291 SI859A1_01812 SI859A1_01813 TRUE 0.97 16 66.032
 2867291 2867292 SI859A1_01813 SI859A1_01814 FALSE 0.284 249 -24.593
 2867293 2867294 SI859A1_01815 SI859A1_01816 FALSE 0.148 29 -2.504
 2867294 2867295 SI859A1_01816 SI859A1_01817 FALSE 0.088 120 -12.412
 2867295 2867296 SI859A1_01817 SI859A1_01818 FALSE 0.336 32 -9.028
 2867296 2867297 SI859A1_01818 SI859A1_01819 TRUE 0.807 148 143.571
 2867297 2867298 SI859A1_01819 SI859A1_01820 TRUE 0.946 112 445.386
 2867298 2867299 SI859A1_01820 SI859A1_01821 TRUE 0.998 3 564.936
 2867299 2867300 SI859A1_01821 SI859A1_01822 TRUE 0.95 329 645.727
 2867300 2867301 SI859A1_01822 SI859A1_01823 TRUE 0.631 134 32.458
 2867303 2867304 SI859A1_01825 SI859A1_01826 TRUE 0.76 20 0
 2867304 2867305 SI859A1_01826 SI859A1_01827 FALSE 0.136 84 -0.142
 2867308 2867309 SI859A1_01830 SI859A1_01831 TRUE 0.962 -3 21.786
 2867309 2867310 SI859A1_01831 SI859A1_01832 TRUE 0.606 89 17.955
 2867311 2867312 SI859A1_01833 SI859A1_01834 TRUE 0.611 290 38.177
 2867312 2867313 SI859A1_01834 SI859A1_01835 TRUE 0.739 237 34.702
 2867316 2867317 SI859A1_01838 SI859A1_01839 TRUE 0.863 42 27.395
 2867317 2867318 SI859A1_01839 SI859A1_01840 FALSE 0.183 118 -6.679
 2867318 2867319 SI859A1_01840 SI859A1_01841 TRUE 0.982 32 403.149
 2867319 2867320 SI859A1_01841 SI859A1_01842 TRUE 0.999 11 1062.432
 2867320 2867321 SI859A1_01842 SI859A1_01843 TRUE 0.941 5 21.047
 2867322 2867323 SI859A1_01844 SI859A1_01845 FALSE 0.293 159 17.676
 2867323 2867324 SI859A1_01845 SI859A1_01846 FALSE 0.098 105 -0.883
 2867324 2867325 SI859A1_01846 SI859A1_01847 TRUE 0.83 -3 0.557
 2867325 2867326 SI859A1_01847 SI859A1_01848 TRUE 0.978 335 871.488
 2867326 2867327 SI859A1_01848 SI859A1_01849 TRUE 0.974 473 971.061
 2867327 2867328 SI859A1_01849 SI859A1_01850 FALSE 0.406 144 16.815
 2867331 2867332 SI859A1_01853 SI859A1_01854 TRUE 0.998 -3 843.31
 2867332 2867333 SI859A1_01854 SI859A1_01855 TRUE 0.978 1 62.319
 2867333 2867334 SI859A1_01855 SI859A1_01856 TRUE 0.963 -3 16.114
 2867334 2867335 SI859A1_01856 SI859A1_01857 TRUE 0.801 420 104.177
 2867335 2867336 SI859A1_01857 SI859A1_01858 TRUE 0.921 4 10.143
 2867336 2867337 SI859A1_01858 SI859A1_01859 TRUE 0.903 -3 9.028
 2867337 2867338 SI859A1_01859 SI859A1_01860 TRUE 0.951 -3 34.552
 2867338 2867339 SI859A1_01860 SI859A1_01861 TRUE 0.726 20 5.208
 2867339 2867340 SI859A1_01861 SI859A1_01862 FALSE 0.022 484 0
 2867341 2867342 SI859A1_01863 SI859A1_01864 FALSE 0.14 104 -13.034
 2867342 2867343 SI859A1_01864 SI859A1_01865 TRUE 0.734 95 32.878
 2867343 2867344 SI859A1_01865 SI859A1_01866 TRUE 0.993 0 315.572
 2867344 2867345 SI859A1_01866 SI859A1_01867 TRUE 0.884 38 29.26
 2867345 2867346 SI859A1_01867 SI859A1_01868 FALSE 0.022 135 -1.363
 2867346 2867347 SI859A1_01868 SI859A1_01869 FALSE 0.077 105 -1.849
 2867347 2867348 SI859A1_01869 SI859A1_01870 TRUE 0.977 2 31.3
 2867348 2867349 SI859A1_01870 SI859A1_01871 FALSE 0.04 806 -8
 2867349 2867350 SI859A1_01871 SI859A1_01872 FALSE 0.101 152 -12.063
 2867350 2867351 SI859A1_01872 SI859A1_01873 TRUE 0.955 149 1466.73
 2867351 2867352 SI859A1_01873 SI859A1_01874 TRUE 0.959 117 1662.618
 2867352 2867353 SI859A1_01874 SI859A1_01875 TRUE 0.99 105 1715.823
 2867353 2867354 SI859A1_01875 SI859A1_01876 TRUE 0.787 210 415.409
 2867354 2867355 SI859A1_01876 SI859A1_01877 TRUE 0.996 -3 812.086
 2867355 2867356 SI859A1_01877 SI859A1_01878 TRUE 0.959 138 1595.936
 2867356 2867357 SI859A1_01878 SI859A1_01879 TRUE 0.97 379 1550.634
 2867357 2867358 SI859A1_01879 SI859A1_01880 TRUE 0.99 90 1599.84
 2867358 2867359 SI859A1_01880 SI859A1_01881 TRUE 0.999 9 1707.877
 2867359 2867360 SI859A1_01881 SI859A1_01882 TRUE 0.995 42 1776.622
 2867360 2867361 SI859A1_01882 SI859A1_01883 TRUE 0.998 13 793.013
 2867361 2867362 SI859A1_01883 SI859A1_01884 TRUE 0.996 26 796.048
 2867362 2867363 SI859A1_01884 SI859A1_01885 TRUE 0.998 -7 1574.53
 2867363 2867364 SI859A1_01885 SI859A1_01886 TRUE 0.998 16 1549.08
 2867364 2867365 SI859A1_01886 SI859A1_01887 TRUE 0.953 322 1276.596
 2867365 2867366 SI859A1_01887 SI859A1_01888 TRUE 0.998 12 1298.271
 2867366 2867367 SI859A1_01888 SI859A1_01889 TRUE 0.997 28 1585.106
 2867367 2867368 SI859A1_01889 SI859A1_01890 TRUE 0.999 0 1465.12
 2867368 2867369 SI859A1_01890 SI859A1_01891 TRUE 0.963 294 1434.796
 2867369 2867370 SI859A1_01891 SI859A1_01892 TRUE 0.881 314 1537.725
 2867370 2867371 SI859A1_01892 SI859A1_01893 TRUE 0.999 0 1539.387
 2867371 2867372 SI859A1_01893 SI859A1_01894 TRUE 0.997 26 1377.61
 2867372 2867373 SI859A1_01894 SI859A1_01895 FALSE 0.32 166 0
 2867373 2867374 SI859A1_01895 SI859A1_01896 TRUE 0.77 64 0
 2867374 2867375 SI859A1_01896 SI859A1_01897 TRUE 0.995 31 1454.848
 2867375 2867376 SI859A1_01897 SI859A1_01898 TRUE 0.997 32 1601.705
 2867376 2867377 SI859A1_01898 SI859A1_01899 TRUE 0.85 425 366.643
 2867377 2867378 SI859A1_01899 SI859A1_01900 TRUE 0.974 141 1005.078
 2867378 2867379 SI859A1_01900 SI859A1_01901 TRUE 0.909 325 971.66
 2867379 2867380 SI859A1_01901 SI859A1_01902 TRUE 0.992 52 1659.25
 2867380 2867381 SI859A1_01902 SI859A1_01903 TRUE 0.956 364 1268.927
 2867381 2867382 SI859A1_01903 SI859A1_01904 TRUE 0.999 5 1647.352
 2867382 2867383 SI859A1_01904 SI859A1_01905 TRUE 0.951 146 1301.366
 2867383 2867384 SI859A1_01905 SI859A1_t01906 FALSE 0.026 355 0
 2867384 2867385 SI859A1_t01906 SI859A1_01907 FALSE 0.034 217 0
 2867385 2867386 SI859A1_01907 SI859A1_01908 FALSE 0.04 33 -1.137
 2867388 2867389 SI859A1_01910 SI859A1_01911 FALSE 0.006 336 -0.927
 2867389 2867390 SI859A1_01911 SI859A1_t01912 FALSE 0.037 162 0
 2867390 2867391 SI859A1_t01912 SI859A1_t01913 FALSE 0.181 28 0
 2867392 2867393 SI859A1_01914 SI859A1_01915 FALSE 0.037 162 0
 2867393 2867394 SI859A1_01915 SI859A1_01916 FALSE 0.114 48 0
 2867394 2867395 SI859A1_01916 SI859A1_01917 FALSE 0.036 181 0
 2867398 2867399 SI859A1_01920 SI859A1_01921 FALSE 0.029 161 -2.297
 2867399 2867400 SI859A1_01921 SI859A1_01922 FALSE 0.413 -3 -1.779
 2867402 2867403 SI859A1_01924 SI859A1_01925 FALSE 0.063 103 -0.132
 2867405 2867406 SI859A1_01927 SI859A1_01928 FALSE 0.403 103 5.063
 2867407 2867408 SI859A1_01929 SI859A1_01930 TRUE 0.918 9 7.176
 2867408 2867409 SI859A1_01930 SI859A1_01931 FALSE 0.095 112 0.058
 2867410 2867411 SI859A1_01932 SI859A1_01933 TRUE 0.585 73 13.67
 2867412 2867413 SI859A1_01934 SI859A1_01935 FALSE 0.009 292 -2.131
 2867414 2867415 SI859A1_01936 SI859A1_01937 FALSE 0.306 3 -3.697
 2867417 2867418 SI859A1_01939 SI859A1_01940 FALSE 0.253 108 2.101
 2867418 2867419 SI859A1_01940 SI859A1_01941 FALSE 0.146 334 0.197
 2867420 2867421 SI859A1_01942 SI859A1_01943 FALSE 0.269 5 -4.144
 2867422 2867423 SI859A1_01944 SI859A1_01945 TRUE 0.983 0 45.637
 2867423 2867424 SI859A1_01945 SI859A1_01946 TRUE 0.695 139 29.238
 2867424 2867425 SI859A1_01946 SI859A1_01947 FALSE 0.436 90 -3.814
 2867426 2867427 SI859A1_01948 SI859A1_01949 FALSE 0.033 222 0
 2867427 2867428 SI859A1_01949 SI859A1_01950 FALSE 0.416 -3 0
 2867429 2867430 SI859A1_01951 SI859A1_01952 FALSE 0.328 10 0
 2867430 2867431 SI859A1_01952 SI859A1_01953 TRUE 0.99 -3 239.223
 2867431 2867432 SI859A1_01953 SI859A1_01954 FALSE 0.012 215 -2.159
 2867432 2867433 SI859A1_01954 SI859A1_01955 FALSE 0.115 109 -5.277
 2867433 2867434 SI859A1_01955 SI859A1_01956 TRUE 0.952 111 536.558
 2867434 2867435 SI859A1_01956 SI859A1_01958 TRUE 0.973 -3 39.845
 2867436 2867437 SI859A1_01957 SI859A1_01959 FALSE 0.106 53 0
 2867437 2867438 SI859A1_01959 SI859A1_01960 TRUE 0.634 38 0
 2867439 2867440 SI859A1_01961 SI859A1_01962 TRUE 0.834 20 9.199
 2867440 2867441 SI859A1_01962 SI859A1_01963 TRUE 0.741 92 58.857
 2867441 2867442 SI859A1_01963 SI859A1_01964 TRUE 0.986 3 58.489
 2867442 2867443 SI859A1_01964 SI859A1_01965 TRUE 0.997 31 968.308
 2867443 2867444 SI859A1_01965 SI859A1_01966 TRUE 0.999 0 1061.664
 2867444 2867445 SI859A1_01966 SI859A1_01967 TRUE 0.999 7 970.729
 2867445 2867446 SI859A1_01967 SI859A1_01968 TRUE 0.998 21 1013.799
 2867446 2867447 SI859A1_01968 SI859A1_01969 TRUE 0.975 140 499.695
 2867447 2867448 SI859A1_01969 SI859A1_01970 TRUE 0.976 225 570.367
 2867448 2867449 SI859A1_01970 SI859A1_01971 TRUE 0.977 115 489.585
 2867449 2867450 SI859A1_01971 SI859A1_01972 TRUE 0.997 14 469.749
 2867450 2867451 SI859A1_01972 SI859A1_01973 TRUE 0.934 21 5.321
 2867451 2867452 SI859A1_01973 SI859A1_01974 TRUE 0.667 222 15.389
 2867452 2867453 SI859A1_01974 SI859A1_01975 FALSE 0.482 -7 -3.305
 2867453 2867454 SI859A1_01975 SI859A1_01976 FALSE 0.401 16 -3.228
 2867454 2867455 SI859A1_01976 SI859A1_01977 TRUE 0.997 9 365.229
 2867455 2867456 SI859A1_01977 SI859A1_01978 TRUE 0.998 -9 491.811
 2867459 2867460 SI859A1_01981 SI859A1_t01982 FALSE 0.053 120 0
 2867460 2867461 SI859A1_t01982 SI859A1_01983 FALSE 0.076 85 0
 2867462 2867463 SI859A1_01984 SI859A1_01985 FALSE 0.021 168 -3.27
 2867463 2867464 SI859A1_01985 SI859A1_01986 FALSE 0.268 15 0