VIMSS Operon Predictions for Burkholderia pseudomallei 1710a

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 2366916 2366917 Bpse17_02000002 Bpse17_02000003 TRUE 0.537 149 -8.594
 2366920 2366921 Bpse17_02000006 Bpse17_02000007 FALSE 0.007 260 -10.859
 2366921 2366922 Bpse17_02000007 Bpse17_02000008 TRUE 0.941 57 15.653
 2366922 2366923 Bpse17_02000008 Bpse17_02000009 TRUE 0.94 60 18.457
 2366923 2366924 Bpse17_02000009 Bpse17_02000010 TRUE 0.953 -3 20.988
 2366924 2366925 Bpse17_02000010 Bpse17_02000011 FALSE 0.315 60 -1.861
 2366926 2366927 Bpse17_02000013 Bpse17_02000014 FALSE 0.229 119 0.853
 2366929 2366930 Bpse17_02000016 Bpse17_02000017 TRUE 0.991 20 51.149
 2366930 2366931 Bpse17_02000017 Bpse17_02000018 TRUE 0.986 37 34.493
 2366931 2366932 Bpse17_02000018 Bpse17_02000019 FALSE 0.304 276 11.012
 2366932 2366933 Bpse17_02000019 Bpse17_02000020 TRUE 0.641 132 1.425
 2366933 2366934 Bpse17_02000020 Bpse17_02000021 TRUE 0.682 47 -65.547
 2366934 2366935 Bpse17_02000021 Bpse17_02000022 FALSE 0.304 155 -46.121
 2366935 2366936 Bpse17_02000022 Bpse17_02000023 TRUE 0.879 40 -9.74
 2366936 2366937 Bpse17_02000023 Bpse17_02000024 FALSE 0.002 311 -8.214
 2366938 2366939 Bpse17_02000025 Bpse17_02000026 TRUE 0.713 158 1.753
 2366939 2366940 Bpse17_02000026 Bpse17_02000027 TRUE 0.881 -6 4.742
 2366941 2366942 Bpse17_02000028 Bpse17_02000029 TRUE 0.687 -16 0.452
 2366943 2366944 Bpse17_02000031 Bpse17_02000033 FALSE 0.001 1427 0
 2366944 2366945 Bpse17_02000033 Bpse17_02000034 FALSE 0 1087 -22.885
 2366945 2366946 Bpse17_02000034 Bpse17_02000035 TRUE 0.538 159 3.294
 2366947 2366948 Bpse17_02000036 Bpse17_02000037 TRUE 0.682 -9 0.418
 2366948 2366949 Bpse17_02000037 Bpse17_02000038 TRUE 0.504 -154 0
 2366949 2366950 Bpse17_02000038 Bpse17_02000039 FALSE 0.176 179 0
 2366950 2366951 Bpse17_02000039 Bpse17_02000040 TRUE 0.576 133 1.536
 2366952 2366953 Bpse17_02000041 Bpse17_02000042 FALSE 0.001 314 0.149
 2366954 2366955 Bpse17_02000043 Bpse17_02000044 TRUE 0.623 2 0.139
 2366955 2366956 Bpse17_02000044 Bpse17_02000045 FALSE 0.349 86 0
 2366957 2366958 Bpse17_02000046 Bpse17_02000047 TRUE 0.939 5 1.823
 2366958 2366959 Bpse17_02000047 Bpse17_02000048 TRUE 0.874 69 -3.854
 2366959 2366960 Bpse17_02000048 Bpse17_02000049 TRUE 0.991 -9 77.602
 2366960 2366961 Bpse17_02000049 Bpse17_02000050 TRUE 0.984 8 37.457
 2366961 2366962 Bpse17_02000050 Bpse17_02000051 TRUE 0.977 26 0.149
 2366962 2366963 Bpse17_02000051 Bpse17_02000052 FALSE 0.093 249 0.149
 2366963 2366964 Bpse17_02000052 Bpse17_02000053 TRUE 0.62 15 0.149
 2366964 2366965 Bpse17_02000053 Bpse17_02000054 FALSE 0 1224 -43.425
 2366965 2366966 Bpse17_02000054 Bpse17_02000055 TRUE 0.6 50 0.149
 2366966 2366967 Bpse17_02000055 Bpse17_02000056 TRUE 0.624 12 0.149
 2366967 2366968 Bpse17_02000056 Bpse17_02000057 TRUE 0.636 4 0.149
 2366969 2366970 Bpse17_02000058 Bpse17_02000059 FALSE 0.001 408 0.096
 2366971 2366972 Bpse17_02000060 Bpse17_02000061 FALSE 0.042 281 -5.639
 2366975 2366976 Bpse17_02000064 Bpse17_02000065 FALSE 0.001 350 -9.408
 2366979 2366980 Bpse17_02000068 Bpse17_02000069 TRUE 0.797 -7 5.461
 2366980 2366981 Bpse17_02000069 Bpse17_02000070 FALSE 0.002 563 0.925
 2366981 2366982 Bpse17_02000070 Bpse17_02000071 FALSE 0.054 321 12.298
 2366982 2366983 Bpse17_02000071 Bpse17_02000072 FALSE 0 566 -12.07
 2366983 2366984 Bpse17_02000072 Bpse17_02000075 FALSE 0 890 -22.32
 2366984 2366985 Bpse17_02000075 Bpse17_02000076 FALSE 0.001 644 -10.626
 2366986 2366987 Bpse17_02000077 Bpse17_02000078 FALSE 0.001 411 0.095
 2366990 2366991 Bpse17_02000081 Bpse17_02000082 FALSE 0.013 269 -3.189
 2366991 2366992 Bpse17_02000082 Bpse17_02000083 TRUE 0.684 98 2.893
 2366992 2366993 Bpse17_02000083 Bpse17_02000084 TRUE 0.86 -3 4.545
 2366993 2366994 Bpse17_02000084 Bpse17_02000085 TRUE 0.96 -3 42.627
 2366994 2366995 Bpse17_02000085 Bpse17_02000086 TRUE 0.524 212 13.213
 2366995 2366996 Bpse17_02000086 Bpse17_02000087 FALSE 0.262 158 0.042
 2366996 2366997 Bpse17_02000087 Bpse17_02000088 TRUE 0.709 0 0.735
 2366997 2366998 Bpse17_02000088 Bpse17_02000089 FALSE 0.001 319 -0.766
 2366999 2367000 Bpse17_02000090 Bpse17_02000091 TRUE 0.967 71 3.592
 2367000 2367001 Bpse17_02000091 Bpse17_02000092 TRUE 0.65 92 1.638
 2367001 2367002 Bpse17_02000092 Bpse17_02000093 TRUE 0.937 -87 9.603
 2367002 2367003 Bpse17_02000093 Bpse17_02000094 TRUE 0.993 -3 49.053
 2367003 2367004 Bpse17_02000094 Bpse17_02000095 TRUE 0.991 -3 68.146
 2367004 2367005 Bpse17_02000095 Bpse17_02000096 TRUE 0.949 190 40.768
 2367005 2367006 Bpse17_02000096 Bpse17_02000097 TRUE 0.804 68 0.287
 2367006 2367007 Bpse17_02000097 Bpse17_02000098 TRUE 0.92 36 16.777
 2367007 2367008 Bpse17_02000098 Bpse17_02000099 TRUE 0.878 27 6.788
 2367009 2367010 Bpse17_02000100 Bpse17_02000101 TRUE 0.824 122 24.803
 2367010 2367011 Bpse17_02000101 Bpse17_02000102 TRUE 0.561 131 -7.244
 2367011 2367012 Bpse17_02000102 Bpse17_02000103 FALSE 0.432 119 0.149
 2367012 2367013 Bpse17_02000103 Bpse17_02000104 FALSE 0.244 194 0.149
 2367013 2367014 Bpse17_02000104 Bpse17_02000105 TRUE 0.992 22 27.584
 2367016 2367017 Bpse17_02000107 Bpse17_02000108 FALSE 0 1023 -53.794
 2367017 2367018 Bpse17_02000108 Bpse17_02000109 TRUE 0.637 87 0.946
 2367018 2367019 Bpse17_02000109 Bpse17_02000110 TRUE 0.74 18 0.937
 2367019 2367020 Bpse17_02000110 Bpse17_02000111 TRUE 0.98 -10 7.204
 2367020 2367021 Bpse17_02000111 Bpse17_02000112 TRUE 0.836 -21 6.789
 2367021 2367022 Bpse17_02000112 Bpse17_02000113 FALSE 0.472 128 0.521
 2367022 2367023 Bpse17_02000113 Bpse17_02000114 TRUE 0.741 14 0.946
 2367023 2367024 Bpse17_02000114 Bpse17_02000115 FALSE 0.001 367 0.113
 2367024 2367025 Bpse17_02000115 Bpse17_02000116 FALSE 0 1030 -8.188
 2367026 2367027 Bpse17_02000117 Bpse17_02000118 TRUE 0.96 204 229.993
 2367027 2367028 Bpse17_02000118 Bpse17_02000119 FALSE 0.107 260 -1.923
 2367028 2367029 Bpse17_02000119 Bpse17_02000120 FALSE 0 560 0.79
 2367029 2367030 Bpse17_02000120 Bpse17_02000121 TRUE 0.673 75 1.116
 2367031 2367032 Bpse17_02000122 Bpse17_02000123 FALSE 0.044 296 0.234
 2367032 2367033 Bpse17_02000123 Bpse17_02000124 TRUE 0.957 131 164.856
 2367033 2367034 Bpse17_02000124 Bpse17_02000125 TRUE 0.92 66 63.957
 2367034 2367035 Bpse17_02000125 Bpse17_02000126 TRUE 0.626 137 -0.246
 2367035 2367036 Bpse17_02000126 Bpse17_02000127 TRUE 0.751 230 79.247
 2367036 2367037 Bpse17_02000127 Bpse17_02000128 TRUE 0.976 -3 85.06
 2367040 2367041 Bpse17_02000131 Bpse17_02000132 FALSE 0.061 239 0
 2367043 2367044 Bpse17_02000134 Bpse17_02000135 TRUE 0.909 15 4.898
 2367044 2367045 Bpse17_02000135 Bpse17_02000136 TRUE 0.934 -3 9.359
 2367045 2367046 Bpse17_02000136 Bpse17_02000137 TRUE 0.91 -3 6.994
 2367046 2367047 Bpse17_02000137 Bpse17_02000138 TRUE 0.896 39 4.037
 2367047 2367048 Bpse17_02000138 Bpse17_02000139 TRUE 0.902 -3 6.023
 2367048 2367049 Bpse17_02000139 Bpse17_02000140 TRUE 0.888 -3 4.157
 2367050 2367051 Bpse17_02000141 Bpse17_02000142 FALSE 0 1892 -60.24
 2367051 2367052 Bpse17_02000142 Bpse17_02000143 FALSE 0.196 88 -2.065
 2367052 2367053 Bpse17_02000143 Bpse17_02000144 TRUE 0.696 3 0.69
 2367053 2367054 Bpse17_02000144 Bpse17_02000145 TRUE 0.554 171 6.451
 2367054 2367055 Bpse17_02000145 Bpse17_02000146 TRUE 0.756 80 7.144
 2367055 2367056 Bpse17_02000146 Bpse17_02000147 TRUE 0.822 14 7.144
 2367056 2367057 Bpse17_02000147 Bpse17_02000148 TRUE 0.84 -3 7.144
 2367057 2367058 Bpse17_02000148 Bpse17_02000149 TRUE 0.811 3 5.652
 2367058 2367059 Bpse17_02000149 Bpse17_02000150 TRUE 0.828 -9 6.345
 2367059 2367060 Bpse17_02000150 Bpse17_02000151 FALSE 0.447 166 0.906
 2367060 2367061 Bpse17_02000151 Bpse17_02000152 TRUE 0.707 34 0.8
 2367061 2367062 Bpse17_02000152 Bpse17_02000153 TRUE 0.722 0 0.8
 2367062 2367063 Bpse17_02000153 Bpse17_02000154 TRUE 0.735 18 0.906
 2367063 2367064 Bpse17_02000154 Bpse17_02000155 TRUE 0.675 70 0.906
 2367064 2367065 Bpse17_02000155 Bpse17_02000156 TRUE 0.735 18 0.906
 2367065 2367066 Bpse17_02000156 Bpse17_02000157 TRUE 0.618 39 0.149
 2367066 2367067 Bpse17_02000157 Bpse17_02000158 TRUE 0.514 83 0.149
 2367067 2367068 Bpse17_02000158 Bpse17_02000159 TRUE 0.745 -3 0.872
 2367068 2367069 Bpse17_02000159 Bpse17_02000160 TRUE 0.783 59 6.417
 2367069 2367070 Bpse17_02000160 Bpse17_02000161 FALSE 0.384 155 0.435
 2367070 2367071 Bpse17_02000161 Bpse17_02000162 FALSE 0.001 369 0.425
 2367071 2367072 Bpse17_02000162 Bpse17_02000163 FALSE 0.002 590 0
 2367072 2367073 Bpse17_02000163 Bpse17_02000164 FALSE 0.051 249 0
 2367073 2367074 Bpse17_02000164 Bpse17_02000165 TRUE 0.717 -3 0.533
 2367074 2367075 Bpse17_02000165 Bpse17_02000166 FALSE 0.009 241 -3.34
 2367075 2367076 Bpse17_02000166 Bpse17_02000167 FALSE 0.006 305 0.01
 2367076 2367077 Bpse17_02000167 Bpse17_02000168 FALSE 0.004 481 0.01
 2367078 2367079 Bpse17_02000169 Bpse17_02000170 FALSE 0.182 319 2.728
 2367080 2367081 Bpse17_02000171 Bpse17_02000172 FALSE 0 510 -3.779
 2367083 2367084 Bpse17_02000174 Bpse17_02000175 TRUE 0.943 73 -7.723
 2367084 2367085 Bpse17_02000175 Bpse17_02000176 TRUE 0.859 151 34.732
 2367085 2367086 Bpse17_02000176 Bpse17_02000177 TRUE 0.938 61 32.365
 2367086 2367087 Bpse17_02000177 Bpse17_02000178 TRUE 0.987 3 34.732
 2367087 2367088 Bpse17_02000178 Bpse17_02000179 TRUE 0.991 5 33.41
 2367088 2367089 Bpse17_02000179 Bpse17_02000180 TRUE 0.992 -3 33.41
 2367089 2367090 Bpse17_02000180 Bpse17_02000181 TRUE 0.87 82 1.137
 2367090 2367091 Bpse17_02000181 Bpse17_02000182 TRUE 0.949 21 52.073
 2367091 2367092 Bpse17_02000182 Bpse17_02000183 TRUE 0.7 110 -0.473
 2367092 2367093 Bpse17_02000183 Bpse17_02000184 FALSE 0.146 307 1.556
 2367094 2367095 Bpse17_02000185 Bpse17_02000186 FALSE 0.46 174 -0.36
 2367096 2367097 Bpse17_02000187 Bpse17_02000188 TRUE 0.672 186 7.517
 2367097 2367098 Bpse17_02000188 Bpse17_02000189 FALSE 0.253 252 5.843
 2367099 2367100 Bpse17_02000190 Bpse17_02000191 TRUE 0.822 118 3.547
 2367100 2367101 Bpse17_02000191 Bpse17_02000192 FALSE 0 472 3.842
 2367102 2367103 Bpse17_02000193 Bpse17_02000194 TRUE 0.845 83 7.313
 2367103 2367104 Bpse17_02000194 Bpse17_02000195 TRUE 0.917 85 35.42
 2367104 2367105 Bpse17_02000195 Bpse17_02000196 TRUE 0.985 -3 29.619
 2367105 2367106 Bpse17_02000196 Bpse17_02000197 TRUE 0.919 36 11.013
 2367107 2367108 Bpse17_02000198 Bpse17_02000199 FALSE 0.232 234 2.325
 2367108 2367109 Bpse17_02000199 Bpse17_02000200 FALSE 0.363 207 2.704
 2367109 2367110 Bpse17_02000200 Bpse17_02000201 FALSE 0 794 -11.158
 2367111 2367112 Bpse17_02000202 Bpse17_02000203 TRUE 0.948 194 63.293
 2367112 2367113 Bpse17_02000203 Bpse17_02000204 TRUE 0.994 -3 154.838
 2367113 2367114 Bpse17_02000204 Bpse17_02000205 TRUE 0.992 -3 138.96
 2367114 2367115 Bpse17_02000205 Bpse17_02000206 TRUE 0.992 0 143.461
 2367115 2367116 Bpse17_02000206 Bpse17_02000207 FALSE 0 774 0.139
 2367117 2367118 Bpse17_02000208 Bpse17_02000209 TRUE 0.863 -3 10.027
 2367118 2367119 Bpse17_02000209 Bpse17_02000210 TRUE 0.863 -3 7.182
 2367119 2367120 Bpse17_02000210 Bpse17_02000211 TRUE 0.963 -3 -4.072
 2367121 2367122 Bpse17_02000212 Bpse17_02000213 FALSE 0.364 220 6.655
 2367122 2367123 Bpse17_02000213 Bpse17_02000214 TRUE 0.974 -3 0.124
 2367123 2367124 Bpse17_02000214 Bpse17_02000215 TRUE 0.935 -3 0.149
 2367124 2367125 Bpse17_02000215 Bpse17_02000216 TRUE 0.819 18 4.045
 2367125 2367126 Bpse17_02000216 Bpse17_02000217 TRUE 0.991 27 18.153
 2367126 2367127 Bpse17_02000217 Bpse17_02000218 TRUE 0.581 176 6.627
 2367127 2367128 Bpse17_02000218 Bpse17_02000219 TRUE 0.779 0 1.745
 2367128 2367129 Bpse17_02000219 Bpse17_02000220 TRUE 0.777 2 1.745
 2367129 2367130 Bpse17_02000220 Bpse17_02000221 TRUE 0.863 17 8.201
 2367131 2367132 Bpse17_02000222 Bpse17_02000223 FALSE 0 424 -1.504
 2367133 2367134 Bpse17_02000224 Bpse17_02000225 FALSE 0 683 2.99
 2367136 2367137 Bpse17_02000227 Bpse17_02000228 FALSE 0 894 -8.412
 2367138 2367139 Bpse17_02000229 Bpse17_02000230 FALSE 0 743 0.125
 2367141 2367142 Bpse17_02000232 Bpse17_02000233 TRUE 0.565 39 0.125
 2367142 2367143 Bpse17_02000233 Bpse17_02000234 TRUE 0.629 2 0.115
 2367143 2367144 Bpse17_02000234 Bpse17_02000235 TRUE 0.732 3 0.808
 2367144 2367145 Bpse17_02000235 Bpse17_02000236 FALSE 0 591 0.115
 2367145 2367146 Bpse17_02000236 Bpse17_02000237 TRUE 0.91 38 8.418
 2367146 2367147 Bpse17_02000237 Bpse17_02000238 TRUE 0.908 54 12.864
 2367147 2367148 Bpse17_02000238 Bpse17_02000239 FALSE 0 508 -8.125
 2367148 2367149 Bpse17_02000239 Bpse17_02000240 TRUE 0.993 0 108.491
 2367149 2367150 Bpse17_02000240 Bpse17_02000241 TRUE 0.522 84 -1.997
 2367151 2367152 Bpse17_02000242 Bpse17_02000243 FALSE 0.322 257 -25.05
 2367152 2367153 Bpse17_02000243 Bpse17_02000244 TRUE 0.776 105 5.214
 2367153 2367154 Bpse17_02000244 Bpse17_02000245 TRUE 0.94 142 5.545
 2367154 2367155 Bpse17_02000245 Bpse17_02000246 TRUE 0.984 0 -10.582