VIMSS Operon Predictions for Burkholderia pseudomallei S13

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 2383387 2383388 BpseS_03000001 BpseS_03000002 TRUE 0.808 69 0
 2383388 2383389 BpseS_03000002 BpseS_03000003 FALSE 0.001 315 0.059
 2383389 2383390 BpseS_03000003 BpseS_03000004 FALSE 0.004 1890 -88.103
 2383390 2383391 BpseS_03000004 BpseS_03000005 TRUE 0.728 1 -2.61
 2383391 2383392 BpseS_03000005 BpseS_03000006 TRUE 0.809 25 14.768
 2383392 2383393 BpseS_03000006 BpseS_03000007 TRUE 0.784 37 24.607
 2383393 2383394 BpseS_03000007 BpseS_03000008 FALSE 0.121 240 0.188
 2383397 2383398 BpseS_03000012 BpseS_03000013 TRUE 0.885 -3 21.849
 2383399 2383400 BpseS_03000014 BpseS_03000015 TRUE 0.824 -7 -0.236
 2383400 2383401 BpseS_03000015 BpseS_03000016 TRUE 0.654 97 -0.976
 2383402 2383403 BpseS_03000017 BpseS_03000018 TRUE 0.814 -3 0.197
 2383403 2383404 BpseS_03000018 BpseS_03000019 TRUE 0.861 -13 0.197
 2383405 2383406 BpseS_03000020 BpseS_03000021 FALSE 0 678 0.071
 2383406 2383407 BpseS_03000021 BpseS_03000022 TRUE 0.739 0 0.071
 2383407 2383408 BpseS_03000022 BpseS_03000023 TRUE 0.612 80 0.075
 2383409 2383410 BpseS_03000025 BpseS_03000026 FALSE 0.008 883 -1.658
 2383410 2383411 BpseS_03000026 BpseS_03000027 FALSE 0 485 0.089
 2383412 2383413 BpseS_03000028 BpseS_03000029 TRUE 0.994 -33 190.141
 2383413 2383414 BpseS_03000029 BpseS_03000030 TRUE 0.963 -3 61.362
 2383414 2383415 BpseS_03000030 BpseS_03000031 FALSE 0.481 253 164
 2383415 2383416 BpseS_03000031 BpseS_03000032 TRUE 0.998 -3 184.873
 2383416 2383417 BpseS_03000032 BpseS_03000033 TRUE 0.994 11 169.701
 2383417 2383418 BpseS_03000033 BpseS_03000034 TRUE 0.993 49 126.207
 2383418 2383419 BpseS_03000034 BpseS_03000035 FALSE 0 935 -14.052
 2383419 2383420 BpseS_03000035 BpseS_03000036 FALSE 0.125 253 0.07
 2383420 2383421 BpseS_03000036 BpseS_03000037 FALSE 0.021 572 -1.63
 2383421 2383422 BpseS_03000037 BpseS_03000038 TRUE 0.83 116 1.776
 2383422 2383423 BpseS_03000038 BpseS_03000039 TRUE 0.973 56 29.182
 2383423 2383424 BpseS_03000039 BpseS_03000040 FALSE 0.017 204 0.652
 2383424 2383425 BpseS_03000040 BpseS_03000041 TRUE 0.885 86 7.682
 2383425 2383426 BpseS_03000041 BpseS_03000042 FALSE 0 905 -41.341
 2383427 2383428 BpseS_03000043 BpseS_03000044 FALSE 0.01 269 -9.99
 2383428 2383429 BpseS_03000044 BpseS_03000045 FALSE 0 458 -0.232
 2383434 2383435 BpseS_03000051 BpseS_03000052 TRUE 0.849 24 0.716
 2383435 2383436 BpseS_03000052 BpseS_03000053 TRUE 0.856 61 2.722
 2383437 2383438 BpseS_03000054 BpseS_03000055 FALSE 0.225 36 -0.443
 2383438 2383439 BpseS_03000055 BpseS_03000056 TRUE 0.998 -13 60.941
 2383440 2383441 BpseS_03000057 BpseS_03000058 FALSE 0.001 353 -5.181
 2383441 2383442 BpseS_03000058 BpseS_03000059 TRUE 0.564 256 29.401
 2383442 2383443 BpseS_03000059 BpseS_03000060 TRUE 0.987 53 325.361
 2383443 2383444 BpseS_03000060 BpseS_03000061 TRUE 0.981 7 146.325
 2383444 2383445 BpseS_03000061 BpseS_03000062 TRUE 0.961 120 162.486
 2383445 2383446 BpseS_03000062 BpseS_03000063 TRUE 0.956 103 415.53
 2383446 2383447 BpseS_03000063 BpseS_03000064 TRUE 0.982 80 178.176
 2383447 2383448 BpseS_03000064 BpseS_03000065 TRUE 0.89 45 -11.046
 2383448 2383449 BpseS_03000065 BpseS_03000066 TRUE 0.897 10 -11.392
 2383449 2383450 BpseS_03000066 BpseS_03000067 TRUE 0.997 120 407.664
 2383450 2383451 BpseS_03000067 BpseS_03000068 TRUE 0.984 -3 70.713
 2383451 2383452 BpseS_03000068 BpseS_03000069 TRUE 0.961 0 19.749
 2383452 2383453 BpseS_03000069 BpseS_03000070 FALSE 0.222 211 6.446
 2383453 2383454 BpseS_03000070 BpseS_03000071 FALSE 0.225 375 76.959
 2383454 2383455 BpseS_03000071 BpseS_03000072 TRUE 0.999 49 133.297
 2383455 2383456 BpseS_03000072 BpseS_03000074 TRUE 0.985 224 746
 2383456 2383457 BpseS_03000074 BpseS_03000075 FALSE 0.001 392 -0.402
 2383457 2383458 BpseS_03000075 BpseS_03000076 TRUE 0.814 -7 0.188
 2383458 2383459 BpseS_03000076 BpseS_03000077 FALSE 0 790 0.188
 2383461 2383462 BpseS_03000079 BpseS_03000080 FALSE 0 858 1.819
 2383464 2383465 BpseS_03000082 BpseS_03000083 TRUE 0.93 134 24.285
 2383465 2383466 BpseS_03000083 BpseS_03000084 TRUE 0.98 2 31.264
 2383466 2383467 BpseS_03000084 BpseS_03000085 TRUE 0.999 22 549.681
 2383467 2383468 BpseS_03000085 BpseS_03000086 TRUE 0.999 47 329.818
 2383468 2383469 BpseS_03000086 BpseS_03000087 TRUE 0.999 5 273.02
 2383469 2383470 BpseS_03000087 BpseS_03000088 FALSE 0.367 275 22.429
 2383471 2383472 BpseS_03000089 BpseS_03000090 TRUE 0.543 222 21.663
 2383472 2383473 BpseS_03000090 BpseS_03000091 FALSE 0.403 157 0.006
 2383473 2383474 BpseS_03000091 BpseS_03000092 TRUE 0.788 119 3.057
 2383474 2383475 BpseS_03000092 BpseS_03000093 TRUE 0.838 48 -9.825
 2383476 2383477 BpseS_03000094 BpseS_03000095 TRUE 0.606 122 0.188
 2383477 2383478 BpseS_03000095 BpseS_03000096 FALSE 0 1304 -43.521
 2383478 2383479 BpseS_03000096 BpseS_03000097 FALSE 0 478 -0.582
 2383479 2383480 BpseS_03000097 BpseS_03000098 FALSE 0.001 314 -0.309
 2383480 2383481 BpseS_03000098 BpseS_03000099 FALSE 0.001 346 0.1
 2383483 2383484 BpseS_03000102 BpseS_03000103 TRUE 0.99 31 97.443
 2383484 2383485 BpseS_03000103 BpseS_03000104 TRUE 0.943 182 65.828
 2383485 2383486 BpseS_03000104 BpseS_03000105 TRUE 0.982 75 87.709
 2383488 2383489 BpseS_03000107 BpseS_03000108 TRUE 0.966 4 32.871
 2383489 2383490 BpseS_03000108 BpseS_03000109 FALSE 0.001 351 -1.671
 2383490 2383491 BpseS_03000109 BpseS_03000110 TRUE 0.886 88 28.521
 2383491 2383492 BpseS_03000110 BpseS_03000111 FALSE 0.427 200 0.159
 2383494 2383495 BpseS_03000113 BpseS_03000114 FALSE 0.081 280 0.731
 2383495 2383496 BpseS_03000114 BpseS_03000115 FALSE 0 436 0.144
 2383496 2383497 BpseS_03000115 BpseS_03000116 FALSE 0.132 283 2.006
 2383497 2383498 BpseS_03000116 BpseS_03000117 FALSE 0 540 -6.655
 2383498 2383499 BpseS_03000117 BpseS_03000118 TRUE 0.618 26 -3.898
 2383499 2383500 BpseS_03000118 BpseS_03000119 FALSE 0.302 -3 -9.516
 2383500 2383501 BpseS_03000119 BpseS_03000120 FALSE 0 3610 -64.301
 2383501 2383502 BpseS_03000120 BpseS_03000121 FALSE 0.041 444 240.477
 2383502 2383503 BpseS_03000121 BpseS_03000122 TRUE 0.965 95 85.688
 2383503 2383504 BpseS_03000122 BpseS_03000123 TRUE 0.922 197 247.042
 2383504 2383505 BpseS_03000123 BpseS_03000124 TRUE 0.836 80 -21.933
 2383507 2383508 BpseS_03000126 BpseS_03000127 TRUE 0.865 151 15.187
 2383508 2383509 BpseS_03000127 BpseS_03000128 TRUE 0.995 84 415.707
 2383509 2383510 BpseS_03000128 BpseS_03000129 TRUE 0.977 -3 207.932
 2383511 2383512 BpseS_03000130 BpseS_03000131 TRUE 0.677 148 -60.259
 2383515 2383516 BpseS_03000134 BpseS_03000135 FALSE 0.001 319 -36.7
 2383517 2383518 BpseS_03000136 BpseS_03000137 FALSE 0 418 1.513
 2383518 2383519 BpseS_03000137 BpseS_03000138 FALSE 0 696 -3.209
 2383519 2383520 BpseS_03000138 BpseS_03000139 FALSE 0 3041 -45.819
 2383522 2383523 BpseS_03000141 BpseS_03000142 TRUE 0.8 139 5.254
 2383523 2383524 BpseS_03000142 BpseS_03000143 TRUE 0.969 -9 29.163
 2383524 2383525 BpseS_03000143 BpseS_03000144 FALSE 0 503 0.041
 2383525 2383526 BpseS_03000144 BpseS_03000145 TRUE 0.954 138 198.319
 2383527 2383528 BpseS_03000146 BpseS_03000147 TRUE 0.793 97 2.745
 2383529 2383530 BpseS_03000148 BpseS_03000149 FALSE 0 545 1.755
 2383530 2383531 BpseS_03000149 BpseS_03000150 TRUE 0.999 13 629.677
 2383531 2383532 BpseS_03000150 BpseS_03000151 TRUE 0.997 2 55.653
 2383533 2383534 BpseS_03000152 BpseS_03000153 TRUE 0.862 35 1.214
 2383534 2383535 BpseS_03000153 BpseS_03000154 FALSE 0.088 267 0.139
 2383536 2383537 BpseS_03000155 BpseS_03000156 TRUE 0.741 109 1.763
 2383537 2383538 BpseS_03000156 BpseS_03000157 TRUE 0.775 93 2.054
 2383538 2383539 BpseS_03000157 BpseS_03000158 TRUE 0.81 86 2.822
 2383539 2383540 BpseS_03000158 BpseS_03000159 TRUE 0.877 -3 1.076
 2383542 2383543 BpseS_03000161 BpseS_03000162 FALSE 0 433 -0.04
 2383547 2383548 BpseS_03000167 BpseS_03000168 FALSE 0.003 1270 -22.984
 2383549 2383550 BpseS_03000169 BpseS_03000170 TRUE 0.762 38 0.1
 2383550 2383551 BpseS_03000170 BpseS_03000171 TRUE 0.737 47 -0.251
 2383551 2383552 BpseS_03000171 BpseS_03000172 TRUE 0.983 -3 115.375
 2383552 2383553 BpseS_03000172 BpseS_03000173 TRUE 0.942 -3 0.035
 2383553 2383554 BpseS_03000173 BpseS_03000174 TRUE 0.704 -3 -0.066
 2383554 2383555 BpseS_03000174 BpseS_03000175 TRUE 0.938 15 -1.74
 2383555 2383556 BpseS_03000175 BpseS_03000176 TRUE 0.689 8 -0.107
 2383556 2383557 BpseS_03000176 BpseS_03000177 TRUE 0.76 4 0.1
 2383557 2383558 BpseS_03000177 BpseS_03000178 TRUE 0.603 97 0.1
 2383558 2383559 BpseS_03000178 BpseS_03000179 TRUE 0.772 -3 0.1
 2383559 2383560 BpseS_03000179 BpseS_03000180 FALSE 0 1249 -43.512
 2383560 2383561 BpseS_03000180 BpseS_03000181 TRUE 0.953 -16 13.643
 2383561 2383562 BpseS_03000181 BpseS_03000182 FALSE 0.123 147 -8.543
 2383564 2383565 BpseS_03000184 BpseS_03000185 TRUE 0.975 -9 71.358
 2383565 2383566 BpseS_03000185 BpseS_03000186 FALSE 0 788 -17.824
 2383567 2383568 BpseS_03000187 BpseS_03000188 TRUE 0.765 63 -1.487
 2383569 2383570 BpseS_03000189 BpseS_03000190 TRUE 0.983 0 1.647
 2383570 2383571 BpseS_03000190 BpseS_03000191 TRUE 0.938 -3 7.041
 2383571 2383572 BpseS_03000191 BpseS_03000192 TRUE 0.892 12 2.874
 2383572 2383573 BpseS_03000192 BpseS_03000193 TRUE 0.887 44 2.87
 2383573 2383574 BpseS_03000193 BpseS_03000194 TRUE 0.898 -3 2.677
 2383574 2383575 BpseS_03000194 BpseS_03000195 TRUE 0.985 51 73.794
 2383575 2383576 BpseS_03000195 BpseS_03000196 TRUE 0.924 -6 54.714
 2383576 2383577 BpseS_03000196 BpseS_03000197 TRUE 0.869 23 -0.071
 2383577 2383578 BpseS_03000197 BpseS_03000198 TRUE 0.98 46 1.602
 2383580 2383581 BpseS_03000200 BpseS_03000201 FALSE 0 700 1.836
 2383581 2383582 BpseS_03000201 BpseS_03000202 TRUE 0.973 26 23.928
 2383582 2383583 BpseS_03000202 BpseS_03000203 TRUE 0.977 112 21.497
 2383583 2383584 BpseS_03000203 BpseS_03000204 FALSE 0.069 271 0.187
 2383584 2383585 BpseS_03000204 BpseS_03000205 FALSE 0 639 -0.481
 2383585 2383586 BpseS_03000205 BpseS_03000206 TRUE 0.729 0 3.536
 2383586 2383587 BpseS_03000206 BpseS_03000207 TRUE 0.899 22 2.515
 2383587 2383588 BpseS_03000207 BpseS_03000208 TRUE 0.722 181 8.656
 2383589 2383590 BpseS_03000209 BpseS_03000210 FALSE 0 789 -9.006
 2383590 2383591 BpseS_03000210 BpseS_03000211 TRUE 0.815 67 1.9
 2383591 2383592 BpseS_03000211 BpseS_03000212 FALSE 0.004 303 0.839
 2383593 2383594 BpseS_03000213 BpseS_03000214 FALSE 0.271 209 0.192
 2383596 2383597 BpseS_03000216 BpseS_03000217 FALSE 0.015 428 -0.635
 2383597 2383598 BpseS_03000217 BpseS_03000218 FALSE 0.333 245 -14.196
 2383598 2383599 BpseS_03000218 BpseS_03000219 TRUE 0.751 34 -17.152
 2383599 2383600 BpseS_03000219 BpseS_03000220 TRUE 0.95 -3 53.599
 2383600 2383601 BpseS_03000220 BpseS_03000221 TRUE 0.949 -3 28.435
 2383602 2383603 BpseS_03000222 BpseS_03000223 FALSE 0.24 119 1.09
 2383604 2383605 BpseS_03000224 BpseS_03000225 FALSE 0 915 0.17
 2383608 2383609 BpseS_03000228 BpseS_03000229 FALSE 0 608 -7.186
 2383609 2383610 BpseS_03000229 BpseS_03000230 FALSE 0 513 -0.422
 2383613 2383614 BpseS_03000233 BpseS_03000234 FALSE 0.001 350 -1.532
 2383614 2383615 BpseS_03000234 BpseS_03000235 FALSE 0.026 147 -1.5
 2383615 2383616 BpseS_03000235 BpseS_03000236 TRUE 0.99 7 16.094
 2383616 2383617 BpseS_03000236 BpseS_03000237 TRUE 0.987 -3 13.419
 2383617 2383618 BpseS_03000237 BpseS_03000238 TRUE 0.979 -19 0.449
 2383618 2383619 BpseS_03000238 BpseS_03000239 TRUE 0.976 -3 0.449
 2383619 2383620 BpseS_03000239 BpseS_03000240 TRUE 0.994 35 34.758
 2383620 2383621 BpseS_03000240 BpseS_03000241 TRUE 0.838 207 2.054
 2383623 2383624 BpseS_03000244 BpseS_03000245 TRUE 0.915 92 36.381
 2383624 2383625 BpseS_03000245 BpseS_03000247 FALSE 0 657 -19.293
 2383625 2383626 BpseS_03000247 BpseS_03000248 FALSE 0.04 160 -21.09
 2383626 2383627 BpseS_03000248 BpseS_03000249 TRUE 0.712 41 0.01
 2383629 2383630 BpseS_03000251 BpseS_03000252 FALSE 0.034 205 -11.939
 2383630 2383631 BpseS_03000252 BpseS_03000253 TRUE 0.934 -13 3.858
 2383631 2383632 BpseS_03000253 BpseS_03000254 TRUE 0.958 22 7.805
 2383632 2383633 BpseS_03000254 BpseS_03000255 TRUE 0.99 -3 28.782
 2383636 2383637 BpseS_03000258 BpseS_03000259 TRUE 0.946 35 48.443
 2383637 2383638 BpseS_03000259 BpseS_03000260 TRUE 0.988 38 49.708
 2383639 2383640 BpseS_03000261 BpseS_03000262 TRUE 0.976 1 26.658
 2383640 2383641 BpseS_03000262 BpseS_03000263 TRUE 0.987 0 19.738
 2383641 2383642 BpseS_03000263 BpseS_03000264 TRUE 0.997 15 183.761
 2383642 2383643 BpseS_03000264 BpseS_03000265 FALSE 0.007 771 -0.769
 2383648 2383649 BpseS_03000270 BpseS_03000271