VIMSS Operon Predictions for Burkholderia mallei 10399

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 2342327 2342328 Bmal10_03000002 Bmal10_03000003 TRUE 0.955 17 26.58
 2342328 2342329 Bmal10_03000003 Bmal10_03000004 TRUE 0.957 6 6.299
 2342329 2342330 Bmal10_03000004 Bmal10_03000005 FALSE 0.004 1836 -47.179
 2342330 2342331 Bmal10_03000005 Bmal10_03000006 TRUE 0.868 156 10.341
 2342331 2342332 Bmal10_03000006 Bmal10_03000007 TRUE 0.932 80 58.848
 2342332 2342333 Bmal10_03000007 Bmal10_03000008 TRUE 0.944 -3 -1.432
 2342334 2342335 Bmal10_03000009 Bmal10_03000010 FALSE 0.32 158 0.05
 2342336 2342337 Bmal10_03000011 Bmal10_03000012 FALSE 0.314 96 0
 2342338 2342339 Bmal10_03000013 Bmal10_03000014 TRUE 0.803 -64 0.319
 2342340 2342341 Bmal10_03000015 Bmal10_03000016 TRUE 0.667 102 4.188
 2342341 2342342 Bmal10_03000016 Bmal10_03000017 TRUE 0.987 -6 98.627
 2342342 2342343 Bmal10_03000017 Bmal10_03000018 TRUE 0.997 -13 115.005
 2342343 2342344 Bmal10_03000018 Bmal10_03000019 FALSE 0.43 227 0.903
 2342344 2342345 Bmal10_03000019 Bmal10_03000020 TRUE 0.957 31 2.622
 2342345 2342346 Bmal10_03000020 Bmal10_03000021 TRUE 0.956 -3 3.546
 2342348 2342349 Bmal10_03000023 Bmal10_03000024 TRUE 0.888 56 1.518
 2342349 2342350 Bmal10_03000024 Bmal10_03000025 TRUE 0.861 74 8.229
 2342350 2342351 Bmal10_03000025 Bmal10_03000026 TRUE 0.94 38 -0.715
 2342351 2342352 Bmal10_03000026 Bmal10_03000027 TRUE 0.993 -3 30.152
 2342352 2342353 Bmal10_03000027 Bmal10_03000028 TRUE 0.956 -3 2.476
 2342353 2342354 Bmal10_03000028 Bmal10_03000029 TRUE 0.935 36 1.95
 2342355 2342356 Bmal10_03000030 Bmal10_03000031 FALSE 0 487 -8.853
 2342357 2342358 Bmal10_03000032 Bmal10_03000033 TRUE 0.986 49 1.932
 2342358 2342359 Bmal10_03000033 Bmal10_03000034 TRUE 0.57 144 -14.676
 2342359 2342360 Bmal10_03000034 Bmal10_03000035 TRUE 0.781 48 -5.75
 2342360 2342361 Bmal10_03000035 Bmal10_03000036 TRUE 0.797 65 -0.055
 2342362 2342363 Bmal10_03000037 Bmal10_03000038 TRUE 0.954 5 14.731
 2342363 2342364 Bmal10_03000038 Bmal10_03000039 TRUE 0.794 89 0.444
 2342365 2342366 Bmal10_03000040 Bmal10_03000041 TRUE 0.524 122 -4.615
 2342366 2342367 Bmal10_03000041 Bmal10_03000042 TRUE 0.948 67 74.72
 2342367 2342368 Bmal10_03000042 Bmal10_03000043 FALSE 0.033 662 24.722
 2342368 2342369 Bmal10_03000043 Bmal10_03000044 TRUE 0.927 81 27.512
 2342369 2342370 Bmal10_03000044 Bmal10_03000045 FALSE 0.001 328 -13.783
 2342371 2342372 Bmal10_03000046 Bmal10_03000047 FALSE 0 435 0.313
 2342372 2342373 Bmal10_03000047 Bmal10_03000048 FALSE 0.001 344 -0.514
 2342373 2342374 Bmal10_03000048 Bmal10_03000049 TRUE 0.997 -3 69.615
 2342374 2342375 Bmal10_03000049 Bmal10_03000050 TRUE 0.997 -3 98.462
 2342375 2342376 Bmal10_03000050 Bmal10_03000051 TRUE 0.947 -7 127.156
 2342377 2342378 Bmal10_03000052 Bmal10_03000053 TRUE 0.998 -3 94.799
 2342378 2342379 Bmal10_03000053 Bmal10_03000054 TRUE 0.997 -3 58.57
 2342379 2342380 Bmal10_03000054 Bmal10_03000055 FALSE 0.482 339 38.1
 2342381 2342382 Bmal10_03000056 Bmal10_03000057 FALSE 0.084 120 -5.136
 2342384 2342385 Bmal10_03000059 Bmal10_03000060 FALSE 0.143 232 0.225
 2342385 2342386 Bmal10_03000060 Bmal10_03000061 FALSE 0 553 -0.029
 2342386 2342387 Bmal10_03000061 Bmal10_03000062 FALSE 0.033 285 -4.356
 2342388 2342389 Bmal10_03000063 Bmal10_03000064 TRUE 0.956 18 15.848
 2342390 2342391 Bmal10_03000065 Bmal10_03000066 TRUE 0.957 86 157.609
 2342391 2342392 Bmal10_03000066 Bmal10_03000067 TRUE 0.977 65 153.496
 2342392 2342393 Bmal10_03000067 Bmal10_03000068 TRUE 0.991 -3 47.238
 2342393 2342394 Bmal10_03000068 Bmal10_03000069 FALSE 0.004 1716 -100.488
 2342394 2342395 Bmal10_03000069 Bmal10_03000070 TRUE 0.997 -3 90.704
 2342395 2342396 Bmal10_03000070 Bmal10_03000071 TRUE 0.987 -3 112.894
 2342396 2342397 Bmal10_03000071 Bmal10_03000072 TRUE 0.972 -3 105.542
 2342399 2342400 Bmal10_03000074 Bmal10_03000075 TRUE 0.631 71 0.252
 2342401 2342402 Bmal10_03000076 Bmal10_03000077 FALSE 0 728 -0.721
 2342402 2342403 Bmal10_03000077 Bmal10_03000078 TRUE 0.914 74 -1.55
 2342404 2342405 Bmal10_03000079 Bmal10_03000080 FALSE 0.258 165 12.421
 2342408 2342409 Bmal10_03000083 Bmal10_03000084 FALSE 0.472 80 0.118
 2342409 2342410 Bmal10_03000084 Bmal10_03000085 TRUE 0.79 28 0.121
 2342411 2342412 Bmal10_03000086 Bmal10_03000087 FALSE 0.314 96 0
 2342415 2342416 Bmal10_03000090 Bmal10_03000091 FALSE 0.305 72 -2.649
 2342417 2342418 Bmal10_03000092 Bmal10_03000093 FALSE 0 1022 -32.788
 2342418 2342419 Bmal10_03000093 Bmal10_03000094 FALSE 0 613 0.319
 2342420 2342421 Bmal10_03000095 Bmal10_03000096 TRUE 0.999 23 443.849
 2342422 2342423 Bmal10_03000097 Bmal10_03000098 TRUE 0.908 44 2.984
 2342423 2342424 Bmal10_03000098 Bmal10_03000099 TRUE 0.943 15 5.765
 2342425 2342426 Bmal10_03000100 Bmal10_03000102 FALSE 0 1376 -60.379
 2342426 2342427 Bmal10_03000102 Bmal10_03000103 TRUE 0.744 74 -1.918
 2342427 2342428 Bmal10_03000103 Bmal10_03000104 TRUE 0.901 45 -12.853
 2342428 2342429 Bmal10_03000104 Bmal10_03000105 FALSE 0.009 474 -21.391
 2342429 2342430 Bmal10_03000105 Bmal10_03000106 TRUE 0.824 236 127.024
 2342430 2342431 Bmal10_03000106 Bmal10_03000107 TRUE 0.924 202 167.436
 2342431 2342432 Bmal10_03000107 Bmal10_03000108 TRUE 0.907 145 4.193
 2342432 2342433 Bmal10_03000108 Bmal10_03000109 TRUE 0.812 149 4.237
 2342433 2342434 Bmal10_03000109 Bmal10_03000110 TRUE 0.996 109 1000.956
 2342434 2342435 Bmal10_03000110 Bmal10_03000111 TRUE 0.961 130 316.396
 2342435 2342436 Bmal10_03000111 Bmal10_03000112 TRUE 0.979 59 75.337
 2342437 2342438 Bmal10_03000113 Bmal10_03000114 FALSE 0 625 -53.262
 2342438 2342439 Bmal10_03000114 Bmal10_03000115 TRUE 0.836 11 0.273
 2342439 2342440 Bmal10_03000115 Bmal10_03000116 TRUE 0.708 22 0
 2342440 2342441 Bmal10_03000116 Bmal10_03000117 FALSE 0.314 96 0
 2342444 2342445 Bmal10_03000120 Bmal10_03000121 FALSE 0.314 96 0
 2342445 2342446 Bmal10_03000121 Bmal10_03000122 FALSE 0.258 129 0
 2342446 2342447 Bmal10_03000122 Bmal10_03000123 FALSE 0.24 99 0
 2342448 2342449 Bmal10_03000124 Bmal10_03000125 FALSE 0 666 3.104
 2342449 2342450 Bmal10_03000125 Bmal10_03000126 FALSE 0 1140 -95.378
 2342451 2342452 Bmal10_03000127 Bmal10_03000128 FALSE 0.023 419 -22.194
 2342452 2342453 Bmal10_03000128 Bmal10_03000129 TRUE 0.686 187 7.295
 2342453 2342454 Bmal10_03000129 Bmal10_03000130 FALSE 0.002 305 5.277
 2342454 2342455 Bmal10_03000130 Bmal10_03000131 TRUE 0.995 21 565.818
 2342455 2342456 Bmal10_03000131 Bmal10_03000132 TRUE 0.972 146 681.132
 2342456 2342457 Bmal10_03000132 Bmal10_03000133 TRUE 0.988 141 561.254
 2342457 2342458 Bmal10_03000133 Bmal10_03000134 TRUE 0.997 54 582.078
 2342459 2342460 Bmal10_03000135 Bmal10_03000136 TRUE 0.911 107 46.065
 2342460 2342461 Bmal10_03000136 Bmal10_03000137 TRUE 0.967 68 54.691
 2342461 2342462 Bmal10_03000137 Bmal10_03000138 TRUE 0.865 136 20.172
 2342463 2342464 Bmal10_03000139 Bmal10_03000140 FALSE 0.001 351 -57.506
 2342464 2342465 Bmal10_03000140 Bmal10_03000141 TRUE 0.983 185 690.688
 2342465 2342466 Bmal10_03000141 Bmal10_03000142 TRUE 0.982 100 295.119
 2342466 2342467 Bmal10_03000142 Bmal10_03000143 TRUE 0.882 104 1.683
 2342467 2342468 Bmal10_03000143 Bmal10_03000144 TRUE 0.526 195 0.018
 2342469 2342470 Bmal10_03000145 Bmal10_03000146 FALSE 0.046 280 -0.343
 2342470 2342471 Bmal10_03000146 Bmal10_03000147 TRUE 0.583 175 2.385
 2342471 2342472 Bmal10_03000147 Bmal10_03000148 TRUE 0.866 50 2.085
 2342472 2342473 Bmal10_03000148 Bmal10_03000149 FALSE 0.003 572 0
 2342473 2342474 Bmal10_03000149 Bmal10_03000150 FALSE 0.314 96 0
 2342475 2342476 Bmal10_03000151 Bmal10_03000152 FALSE 0.402 146 0.116
 2342477 2342478 Bmal10_03000154 Bmal10_03000155 FALSE 0 2175 -32.941
 2342479 2342480 Bmal10_03000156 Bmal10_03000157 TRUE 0.828 4 0.231
 2342480 2342481 Bmal10_03000157 Bmal10_03000158 TRUE 0.843 25 0.231
 2342482 2342483 Bmal10_03000159 Bmal10_03000160 TRUE 0.617 159 -0.048
 2342483 2342484 Bmal10_03000160 Bmal10_03000161 TRUE 0.942 58 35.883
 2342486 2342487 Bmal10_03000163 Bmal10_03000164 FALSE 0.045 199 -4.983
 2342489 2342490 Bmal10_03000166 Bmal10_03000167 FALSE 0 800 0.142
 2342490 2342491 Bmal10_03000167 Bmal10_03000168 TRUE 0.948 -3 2.601
 2342492 2342493 Bmal10_03000169 Bmal10_03000170 FALSE 0.446 138 0.314
 2342493 2342494 Bmal10_03000170 Bmal10_03000171 TRUE 0.557 86 -0.306
 2342494 2342495 Bmal10_03000171 Bmal10_03000172 TRUE 0.964 7 0.312
 2342495 2342496 Bmal10_03000172 Bmal10_03000173 TRUE 0.933 0 2.581
 2342497 2342498 Bmal10_03000174 Bmal10_03000175 FALSE 0.185 216 0.167
 2342498 2342499 Bmal10_03000175 Bmal10_03000176 FALSE 0.122 243 0.195
 2342499 2342500 Bmal10_03000176 Bmal10_03000177 FALSE 0.444 175 0.309
 2342500 2342501 Bmal10_03000177 Bmal10_03000178 TRUE 0.989 -3 23.208
 2342501 2342502 Bmal10_03000178 Bmal10_03000179 FALSE 0.468 100 0.099
 2342503 2342504 Bmal10_03000180 Bmal10_03000181 TRUE 0.882 173 75.455
 2342504 2342505 Bmal10_03000181 Bmal10_03000182 TRUE 0.977 -3 74.327
 2342505 2342506 Bmal10_03000182 Bmal10_03000183 TRUE 0.985 -3 95.086
 2342506 2342507 Bmal10_03000183 Bmal10_03000184 TRUE 0.978 24 58.761
 2342507 2342508 Bmal10_03000184 Bmal10_03000185 TRUE 0.916 11 3.751
 2342508 2342509 Bmal10_03000185 Bmal10_03000186 TRUE 0.909 -3 2.587
 2342509 2342510 Bmal10_03000186 Bmal10_03000187 TRUE 0.705 22 1.029
 2342510 2342511 Bmal10_03000187 Bmal10_03000188 TRUE 0.821 59 -2.26
 2342511 2342512 Bmal10_03000188 Bmal10_03000189 FALSE 0.001 405 -3.059
 2342512 2342513 Bmal10_03000189 Bmal10_03000191 FALSE 0 808 0.262
 2342517 2342518 Bmal10_03000195 Bmal10_03000196 TRUE 0.875 -3 0.817
 2342521 2342522 Bmal10_03000199 Bmal10_03000200 FALSE 0.38 55 -1.561
 2342522 2342523 Bmal10_03000200 Bmal10_03000202 FALSE 0.001 385 0.098
 2342523 2342524 Bmal10_03000202 Bmal10_03000203 TRUE 0.801 -3 0.162
 2342524 2342525 Bmal10_03000203 Bmal10_03000204 TRUE 0.799 -3 0.142
 2342529 2342530 Bmal10_03000208 Bmal10_03000209 TRUE 0.898 -27 3.087
 2342530 2342531 Bmal10_03000209 Bmal10_03000210 TRUE 0.865 58 2.757
 2342531 2342532 Bmal10_03000210 Bmal10_03000211 FALSE 0.001 598 0.116
 2342532 2342533 Bmal10_03000211 Bmal10_03000212 TRUE 0.888 70 0.116
 2342533 2342534 Bmal10_03000212 Bmal10_03000213 TRUE 0.839 5 0.116
 2342534 2342535 Bmal10_03000213 Bmal10_03000214 TRUE 0.931 85 29.209
 2342535 2342536 Bmal10_03000214 Bmal10_03000215 TRUE 0.935 84 31.179
 2342539 2342540 Bmal10_03000218 Bmal10_03000219 FALSE 0.144 110 -6.783
 2342542 2342543 Bmal10_03000221 Bmal10_03000222 TRUE 0.992 -3 212.564
 2342543 2342544 Bmal10_03000222 Bmal10_03000223 TRUE 0.836 3 -1.215
 2342544 2342545 Bmal10_03000223 Bmal10_03000224 FALSE 0.009 476 0.118
 2342545 2342546 Bmal10_03000224 Bmal10_03000225 TRUE 0.543 66 0
 2342546 2342547 Bmal10_03000225 Bmal10_03000226 FALSE 0.314 96 0
 2342549 2342550 Bmal10_03000228 Bmal10_03000229 FALSE 0.01 207 3.093
 2342550 2342551 Bmal10_03000229 Bmal10_03000230 FALSE 0.012 238 3.093
 2342552 2342553 Bmal10_03000231 Bmal10_03000232 FALSE 0.001 401 1.398
 2342553 2342554 Bmal10_03000232 Bmal10_03000233 FALSE 0.029 256 -3.425
 2342554 2342555 Bmal10_03000233 Bmal10_03000234 FALSE 0.189 67 2.524
 2342555 2342556 Bmal10_03000234 Bmal10_03000235 TRUE 0.593 86 3.106
 2342556 2342557 Bmal10_03000235 Bmal10_03000236 TRUE 0.975 11 20.343
 2342557 2342558 Bmal10_03000236 Bmal10_03000237 TRUE 0.719 76 -4.997
 2342558 2342559 Bmal10_03000237 Bmal10_03000238 TRUE 0.777 43 -1.103
 2342559 2342560 Bmal10_03000238 Bmal10_03000239 TRUE 0.994 20 198.1
 2342560 2342561 Bmal10_03000239 Bmal10_03000240 TRUE 0.995 1 239.036
 2342562 2342563 Bmal10_03000241 Bmal10_03000242 FALSE 0.289 71 8.654
 2342564 2342565 Bmal10_03000243 Bmal10_03000244 FALSE 0.001 372 -3.87
 2342565 2342566 Bmal10_03000244 Bmal10_03000245 FALSE 0.018 106 -13.675
 2342566 2342567 Bmal10_03000245 Bmal10_03000246 TRUE 0.777 92 7.608
 2342567 2342568 Bmal10_03000246 Bmal10_03000247 FALSE 0.456 -3 1.134
 2342570 2342571 Bmal10_03000249 Bmal10_03000250 TRUE 0.87 59 0.012
 2342571 2342572 Bmal10_03000250 Bmal10_03000251 TRUE 0.914 42 -10.394
 2342572 2342573 Bmal10_03000251 Bmal10_03000252 FALSE 0.235 258 -10.756
 2342574 2342575 Bmal10_03000253 Bmal10_03000254 TRUE 0.978 51 -2.898
 2342575 2342576 Bmal10_03000254 Bmal10_03000255 TRUE 0.877 93 0.17
 2342576 2342577 Bmal10_03000255 Bmal10_03000256 TRUE 0.988 -3 25.488
 2342577 2342578 Bmal10_03000256 Bmal10_03000257 TRUE 0.859 106 20.488
 2342579 2342580 Bmal10_03000258 Bmal10_03000259 TRUE 0.905 5 -4.503
 2342581 2342582 Bmal10_03000260 Bmal10_03000261 TRUE 0.885 48 3.654
 2342582 2342583 Bmal10_03000261 Bmal10_03000262 TRUE 0.839 103 -29.255
 2342586 2342587 Bmal10_03000265 Bmal10_03000266 FALSE 0 720 0.301
 2342587 2342588 Bmal10_03000266 Bmal10_03000267 FALSE 0 1127 -54.149
 2342590 2342591 Bmal10_03000269 Bmal10_03000270 TRUE 0.941 277 395.439
 2342591 2342592 Bmal10_03000270 Bmal10_03000271 TRUE 0.989 161 799.