VIMSS Operon Predictions for Burkholderia pseudomallei 1106b

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 2624191 2624192 Bpse110_02000001 Bpse110_02000002 FALSE 0.347 208 0.534
 2624193 2624194 Bpse110_02000003 Bpse110_02000004 FALSE 0.355 135 -0.287
 2624195 2624196 Bpse110_02000005 Bpse110_02000006 TRUE 0.956 -19 6.204
 2624198 2624199 Bpse110_02000008 Bpse110_02000009 TRUE 0.965 -3 29.538
 2624199 2624200 Bpse110_02000009 Bpse110_02000010 TRUE 0.844 69 0.103
 2624201 2624202 Bpse110_02000011 Bpse110_02000012 TRUE 0.902 101 15.156
 2624204 2624205 Bpse110_02000014 Bpse110_02000015 TRUE 0.992 138 742.35
 2624205 2624206 Bpse110_02000015 Bpse110_02000016 TRUE 0.998 2 538.75
 2624206 2624207 Bpse110_02000016 Bpse110_02000017 TRUE 0.997 99 415.311
 2624208 2624209 Bpse110_02000018 Bpse110_02000019 FALSE 0.038 107 -2.528
 2624210 2624211 Bpse110_02000020 Bpse110_02000021 FALSE 0.272 109 -10.565
 2624213 2624214 Bpse110_02000023 Bpse110_02000024 TRUE 0.931 114 9.761
 2624214 2624215 Bpse110_02000024 Bpse110_02000025 TRUE 0.998 16 564.135
 2624215 2624216 Bpse110_02000025 Bpse110_02000026 FALSE 0.233 254 -5.985
 2624216 2624217 Bpse110_02000026 Bpse110_02000027 TRUE 0.991 89 136.854
 2624217 2624218 Bpse110_02000027 Bpse110_02000028 TRUE 0.997 2 409.409
 2624222 2624223 Bpse110_02000032 Bpse110_02000033 FALSE 0.001 342 0.596
 2624223 2624224 Bpse110_02000033 Bpse110_02000034 TRUE 0.86 72 3.226
 2624224 2624225 Bpse110_02000034 Bpse110_02000035 TRUE 0.988 59 22.965
 2624225 2624226 Bpse110_02000035 Bpse110_02000036 TRUE 0.979 32 3.286
 2624226 2624227 Bpse110_02000036 Bpse110_02000037 TRUE 0.819 121 -8.251
 2624227 2624228 Bpse110_02000037 Bpse110_02000038 TRUE 0.968 53 24.031
 2624228 2624229 Bpse110_02000038 Bpse110_02000039 FALSE 0.137 225 -20.959
 2624229 2624230 Bpse110_02000039 Bpse110_02000040 TRUE 0.989 38 254.156
 2624230 2624231 Bpse110_02000040 Bpse110_02000041 TRUE 0.968 144 411.536
 2624231 2624232 Bpse110_02000041 Bpse110_02000042 TRUE 0.873 21 31.903
 2624232 2624233 Bpse110_02000042 Bpse110_02000043 TRUE 0.796 227 9.107
 2624233 2624234 Bpse110_02000043 Bpse110_02000044 TRUE 0.996 35 57.868
 2624234 2624235 Bpse110_02000044 Bpse110_02000045 TRUE 0.554 210 5.555
 2624235 2624236 Bpse110_02000045 Bpse110_02000046 TRUE 0.766 158 5.161
 2624237 2624238 Bpse110_02000047 Bpse110_02000048 TRUE 0.816 169 21.85
 2624238 2624239 Bpse110_02000048 Bpse110_02000049 TRUE 0.987 26 119.945
 2624239 2624240 Bpse110_02000049 Bpse110_02000050 FALSE 0 749 -41.001
 2624241 2624242 Bpse110_02000051 Bpse110_02000052 TRUE 0.785 102 3.442
 2624243 2624244 Bpse110_02000053 Bpse110_02000054 TRUE 0.998 -3 99.468
 2624244 2624245 Bpse110_02000054 Bpse110_02000055 TRUE 0.991 -3 104.577
 2624245 2624246 Bpse110_02000055 Bpse110_02000056 TRUE 0.952 8 60.622
 2624248 2624249 Bpse110_02000058 Bpse110_02000059 FALSE 0.424 94 0
 2624250 2624251 Bpse110_02000060 Bpse110_02000061 FALSE 0 537 -3.501
 2624252 2624253 Bpse110_02000062 Bpse110_02000063 FALSE 0 689 0.169
 2624253 2624254 Bpse110_02000063 Bpse110_02000064 FALSE 0.201 109 -8.362
 2624254 2624255 Bpse110_02000064 Bpse110_02000065 FALSE 0.012 542 -10.431
 2624255 2624256 Bpse110_02000065 Bpse110_02000066 TRUE 0.884 42 -2.128
 2624256 2624257 Bpse110_02000066 Bpse110_02000067 TRUE 0.653 98 -1.765
 2624257 2624258 Bpse110_02000067 Bpse110_02000068 TRUE 0.825 26 -0.19
 2624258 2624259 Bpse110_02000068 Bpse110_02000069 FALSE 0.001 488 -9.454
 2624263 2624264 Bpse110_02000073 Bpse110_02000074 FALSE 0.202 130 -26.042
 2624264 2624265 Bpse110_02000074 Bpse110_02000075 FALSE 0 1093 -36.152
 2624265 2624266 Bpse110_02000075 Bpse110_02000077 FALSE 0 1187 -36.152
 2624267 2624268 Bpse110_02000078 Bpse110_02000079 TRUE 0.953 -3 21.941
 2624268 2624269 Bpse110_02000079 Bpse110_02000080 TRUE 0.953 9 10.175
 2624269 2624270 Bpse110_02000080 Bpse110_02000081 FALSE 0.004 309 4.715
 2624273 2624274 Bpse110_02000085 Bpse110_02000086 FALSE 0.001 1130 0
 2624274 2624275 Bpse110_02000086 Bpse110_02000087 FALSE 0 585 -5.565
 2624276 2624277 Bpse110_02000088 Bpse110_02000089 FALSE 0.018 539 -23.143
 2624277 2624278 Bpse110_02000089 Bpse110_02000090 TRUE 0.993 67 88.762
 2624278 2624279 Bpse110_02000090 Bpse110_02000091 TRUE 0.988 61 132.836
 2624279 2624280 Bpse110_02000091 Bpse110_02000092 TRUE 0.991 7 424.352
 2624281 2624282 Bpse110_02000093 Bpse110_02000094 TRUE 0.991 -3 408.623
 2624282 2624283 Bpse110_02000094 Bpse110_02000095 TRUE 0.989 -3 348.119
 2624283 2624284 Bpse110_02000095 Bpse110_02000096 FALSE 0 1960 -92.724
 2624284 2624285 Bpse110_02000096 Bpse110_02000097 FALSE 0 419 2.929
 2624285 2624286 Bpse110_02000097 Bpse110_02000098 TRUE 0.535 181 2.321
 2624289 2624290 Bpse110_02000102 Bpse110_02000103 FALSE 0.13 194 1.736
 2624290 2624291 Bpse110_02000103 Bpse110_02000104 TRUE 0.998 13 395.879
 2624291 2624292 Bpse110_02000104 Bpse110_02000105 TRUE 0.991 74 163.35
 2624292 2624293 Bpse110_02000105 Bpse110_02000106 FALSE 0.478 208 3.689
 2624293 2624294 Bpse110_02000106 Bpse110_02000108 FALSE 0 1730 -82.949
 2624296 2624297 Bpse110_02000110 Bpse110_02000111 TRUE 0.57 206 175.771
 2624297 2624298 Bpse110_02000111 Bpse110_02000112 TRUE 0.982 58 84.649
 2624299 2624300 Bpse110_02000113 Bpse110_02000114 TRUE 0.776 166 11.809
 2624300 2624301 Bpse110_02000114 Bpse110_02000115 TRUE 0.93 26 5.311
 2624302 2624303 Bpse110_02000116 Bpse110_02000117 TRUE 0.973 125 71.771
 2624303 2624304 Bpse110_02000117 Bpse110_02000118 TRUE 0.996 2 153.858
 2624304 2624305 Bpse110_02000118 Bpse110_02000119 TRUE 0.848 253 128.017
 2624306 2624307 Bpse110_02000120 Bpse110_02000121 TRUE 0.991 88 307.474
 2624307 2624308 Bpse110_02000121 Bpse110_02000122 TRUE 0.97 41 3.913
 2624308 2624309 Bpse110_02000122 Bpse110_02000123 FALSE 0 459 -2.914
 2624309 2624310 Bpse110_02000123 Bpse110_02000124 TRUE 0.95 86 33.271
 2624310 2624311 Bpse110_02000124 Bpse110_02000125 TRUE 0.983 47 2.232
 2624311 2624312 Bpse110_02000125 Bpse110_02000126 TRUE 0.913 71 -0.723
 2624312 2624313 Bpse110_02000126 Bpse110_02000127 FALSE 0.412 78 -0.383
 2624315 2624316 Bpse110_02000129 Bpse110_02000130 TRUE 0.65 106 0.777
 2624316 2624317 Bpse110_02000130 Bpse110_02000131 FALSE 0 570 2.796
 2624317 2624318 Bpse110_02000131 Bpse110_02000132 TRUE 0.942 29 -61.638
 2624318 2624319 Bpse110_02000132 Bpse110_02000133 TRUE 0.997 15 499.009
 2624319 2624320 Bpse110_02000133 Bpse110_02000134 FALSE 0.142 463 485.836
 2624320 2624321 Bpse110_02000134 Bpse110_02000135 TRUE 0.998 80 540.433
 2624321 2624322 Bpse110_02000135 Bpse110_02000136 TRUE 0.992 -3 434.387
 2624322 2624323 Bpse110_02000136 Bpse110_02000137 TRUE 0.916 65 -28.05
 2624325 2624326 Bpse110_02000139 Bpse110_02000140 TRUE 0.837 62 -7.08
 2624327 2624328 Bpse110_02000141 Bpse110_02000142 FALSE 0.276 192 0.177
 2624329 2624330 Bpse110_02000143 Bpse110_02000144 FALSE 0.369 83 2.203
 2624331 2624332 Bpse110_02000145 Bpse110_02000146 TRUE 0.945 24 26.302
 2624334 2624335 Bpse110_02000148 Bpse110_02000149 FALSE 0.11 244 0.308
 2624337 2624338 Bpse110_02000151 Bpse110_02000152 TRUE 0.869 77 5.593
 2624339 2624340 Bpse110_02000153 Bpse110_02000154 TRUE 0.787 84 2.582
 2624342 2624343 Bpse110_02000156 Bpse110_02000157 TRUE 0.976 15 32.474
 2624345 2624346 Bpse110_02000159 Bpse110_02000160 TRUE 0.986 101 140.523
 2624346 2624347 Bpse110_02000160 Bpse110_02000161 TRUE 0.996 2 143.638
 2624347 2624348 Bpse110_02000161 Bpse110_02000162 TRUE 0.989 -3 251.428
 2624348 2624349 Bpse110_02000162 Bpse110_02000163 TRUE 0.99 5 251.319
 2624349 2624350 Bpse110_02000163 Bpse110_02000164 FALSE 0.419 220 36.37
 2624350 2624351 Bpse110_02000164 Bpse110_02000165 TRUE 0.849 222 146.625
 2624351 2624352 Bpse110_02000165 Bpse110_02000166 TRUE 0.988 90 302.656
 2624352 2624353 Bpse110_02000166 Bpse110_02000167 TRUE 0.997 101 293.817
 2624353 2624354 Bpse110_02000167 Bpse110_02000168 TRUE 0.994 18 104.293
 2624354 2624355 Bpse110_02000168 Bpse110_02000169 TRUE 0.998 -13 149.553
 2624355 2624356 Bpse110_02000169 Bpse110_02000170 TRUE 0.999 31 354.619
 2624357 2624358 Bpse110_02000171 Bpse110_02000172 TRUE 0.741 38 -3.744
 2624358 2624359 Bpse110_02000172 Bpse110_02000173 TRUE 0.834 16 -1.838
 2624359 2624360 Bpse110_02000173 Bpse110_02000174 TRUE 0.649 181 -13.594
 2624361 2624362 Bpse110_02000175 Bpse110_02000176 TRUE 0.912 -3 2.303
 2624362 2624363 Bpse110_02000176 Bpse110_02000177 TRUE 0.827 134 8.474
 2624363 2624364 Bpse110_02000177 Bpse110_02000178 TRUE 0.98 15 -7.359
 2624364 2624365 Bpse110_02000178 Bpse110_02000179 TRUE 0.954 28 -24.774
 2624366 2624367 Bpse110_02000180 Bpse110_02000181 FALSE 0 1098 -32.005
 2624367 2624368 Bpse110_02000181 Bpse110_02000182 FALSE 0 3566 -19.109
 2624368 2624369 Bpse110_02000182 Bpse110_02000183 FALSE 0 1093 -19.109
 2624369 2624370 Bpse110_02000183 Bpse110_02000184 FALSE 0 636 0.131
 2624370 2624371 Bpse110_02000184 Bpse110_02000185 FALSE 0.004 2754 -85.155
 2624371 2624372 Bpse110_02000185 Bpse110_02000186 TRUE 0.871 108 0.078
 2624372 2624373 Bpse110_02000186 Bpse110_02000187 FALSE 0.056 779 8.329
 2624373 2624374 Bpse110_02000187 Bpse110_02000188 TRUE 0.995 12 482.647
 2624376 2624377 Bpse110_02000190 Bpse110_02000191 TRUE 0.96 15 10.151
 2624377 2624378 Bpse110_02000191 Bpse110_02000192 TRUE 0.995 92 577.403
 2624378 2624379 Bpse110_02000192 Bpse110_02000193 TRUE 0.993 81 124.34
 2624379 2624380 Bpse110_02000193 Bpse110_02000194 TRUE 0.978 -13 61.425
 2624380 2624381 Bpse110_02000194 Bpse110_02000195 TRUE 0.989 -3 279.631
 2624381 2624382 Bpse110_02000195 Bpse110_02000196 FALSE 0.464 206 3.484
 2624384 2624385 Bpse110_02000198 Bpse110_02000199 TRUE 0.994 93 42.018
 2624385 2624386 Bpse110_02000199 Bpse110_02000200 FALSE 0 605 -6.192
 2624386 2624387 Bpse110_02000200 Bpse110_02000201 FALSE 0 1211 -18.565
 2624389 2624390 Bpse110_02000203 Bpse110_02000204 FALSE 0 491 0.719
 2624390 2624391 Bpse110_02000204 Bpse110_02000205 FALSE 0.106 263 0.719
 2624391 2624392 Bpse110_02000205 Bpse110_02000206 TRUE 0.811 78 2.902
 2624392 2624393 Bpse110_02000206 Bpse110_02000207 TRUE 0.773 93 2.664
 2624393 2624394 Bpse110_02000207 Bpse110_02000208 FALSE 0 702 0.359
 2624395 2624396 Bpse110_02000209 Bpse110_02000210 FALSE 0.395 182 0.369
 2624396 2624397 Bpse110_02000210 Bpse110_02000211 TRUE 0.952 -3 29.467
 2624397 2624398 Bpse110_02000211 Bpse110_02000212 FALSE 0.001 350 -0.065
 2624398 2624399 Bpse110_02000212 Bpse110_02000213 FALSE 0 485 0.366
 2624399 2624400 Bpse110_02000213 Bpse110_02000214 FALSE 0.322 130 -3.19
 2624400 2624401 Bpse110_02000214 Bpse110_02000215 FALSE 0 491 -6.895
 2624402 2624403 Bpse110_02000216 Bpse110_02000217 FALSE 0 624 -1.156
 2624403 2624404 Bpse110_02000217 Bpse110_02000218 TRUE 0.722 120 2.534
 2624405 2624406 Bpse110_02000219 Bpse110_02000220 FALSE 0.325 98 -2.693
 2624406 2624407 Bpse110_02000220 Bpse110_02000221 TRUE 0.846 74 3.9
 2624408 2624409 Bpse110_02000222 Bpse110_02000223 TRUE 0.991 54 117.172
 2624409 2624410 Bpse110_02000223 Bpse110_02000224 TRUE 0.989 33 46.111
 2624410 2624411 Bpse110_02000224 Bpse110_02000225 TRUE 0.969 48 19.566
 2624411 2624412 Bpse110_02000225 Bpse110_02000226 FALSE 0 665 -4.81
 2624412 2624413 Bpse110_02000226 Bpse110_02000227 FALSE 0.36 185 0.356
 2624413 2624414 Bpse110_02000227 Bpse110_02000228 FALSE 0 398 -4.078
 2624414 2624415 Bpse110_02000228 Bpse110_02000229 TRUE 0.999 29 164.449
 2624416 2624417 Bpse110_02000230 Bpse110_02000231 FALSE 0.306 151 0
 2624421 2624422 Bpse110_02000235 Bpse110_02000236 TRUE 0.858 53 3.057
 2624422 2624423 Bpse110_02000236 Bpse110_02000237 FALSE 0.013 573 -10.132
 2624423 2624424 Bpse110_02000237 Bpse110_02000238 FALSE 0.303 182 0.13
 2624424 2624425 Bpse110_02000238 Bpse110_02000239 FALSE 0.038 504 2.694
 2624426 2624427 Bpse110_02000240 Bpse110_02000241 TRUE 0.995 -3 94.57
 2624427 2624428 Bpse110_02000241 Bpse110_02000242 TRUE 0.92 25 1.004
 2624428 2624429 Bpse110_02000242 Bpse110_02000243 TRUE 0.872 -3 2.393
 2624429 2624430 Bpse110_02000243 Bpse110_02000244 TRUE 0.954 43 36.744
 2624430 2624431 Bpse110_02000244 Bpse110_02000245 TRUE 0.977 20 46.626
 2624433 2624434 Bpse110_02000247 Bpse110_02000248 FALSE 0 602 -1.984
 2624437 2624438 Bpse110_02000251 Bpse110_02000252 TRUE 0.906 124 98.379
 2624438 2624439 Bpse110_02000252 Bpse110_02000253 TRUE 0.848 104 7.072
 2624440 2624441 Bpse110_02000254 Bpse110_02000255 TRUE 0.771 71 1.637
 2624441 2624442 Bpse110_02000255 Bpse110_02000256 TRUE 0.721 93 1.634
 2624442 2624443 Bpse110_02000256 Bpse110_02000257 FALSE 0 1150 -89.111
 2624443 2624444 Bpse110_02000257 Bpse110_02000258 TRUE 0.99 7 92.664
 2624445 2624446 Bpse110_02000259 Bpse110_02000260 TRUE 0.786 106 -18.772
 2624446 2624447 Bpse110_02000260 Bpse110_02000261 TRUE 0.94 177 246.491
 2624447 2624448 Bpse110_02000261 Bpse110_02000262 TRUE 0.995 65 157.26
 2624448 2624449 Bpse110_02000262 Bpse110_02000263 TRUE 0.985 -3 62.701
 2624449 2624450 Bpse110_02000263 Bpse110_02000264 TRUE 0.943 133 86.7
 2624450 2624451 Bpse110_02000264 Bpse110_02000265 TRUE 0.991 18 301.533
 2624451 2624452 Bpse110_02000265 Bpse110_02000266 TRUE 0.99 20 219.863
 2624455 2624456 Bpse110_02000269 Bpse110_02000270 TRUE 0.727 104 16.37
 2624456 2624457 Bpse110_02000270 Bpse110_02000271 TRUE 0.95 -3 2.422
 2624457 2624458