VIMSS Operon Predictions for Brucella melitensis biovar Abortus 2308

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 1052754 1052755 BAB1_0001 BAB1_0002 dnaN TRUE 0.972 229 929.645
 1052755 1052756 BAB1_0002 BAB1_0003 dnaN TRUE 0.982 182 961.505
 1052756 1052757 BAB1_0003 BAB1_0004 FALSE 0.032 38 -14.668
 1052758 1052759 BAB1_0005 BAB1_0006 TRUE 0.763 -3 -1.482
 1052759 1052760 BAB1_0006 BAB1_0007 TRUE 0.981 24 319.913
 1052760 1052761 BAB1_0007 BAB1_0008 TRUE 0.997 0 485.078
 1052761 1052762 BAB1_0008 BAB1_0009 TRUE 0.706 112 14.436
 1052762 1052763 BAB1_0009 BAB1_0010 TRUE 0.935 47 13.43
 1052763 1052764 BAB1_0010 BAB1_0011 FALSE 0.203 231 0.011
 1052764 1052765 BAB1_0011 BAB1_0012 TRUE 0.59 46 0.011
 1052765 1052766 BAB1_0012 BAB1_0013 TRUE 0.599 40 0.011
 1052766 1052767 BAB1_0013 BAB1_0014 FALSE 0.097 265 0
 1052769 1052770 BAB1_0016 BAB1_0017 TRUE 0.991 -3 67.256
 1052770 1052771 BAB1_0017 BAB1_0018 TRUE 0.977 -7 184.999
 1052771 1052772 BAB1_0018 BAB1_0019 TRUE 0.994 12 408.685
 1052772 1052773 BAB1_0019 BAB1_0020 ivd TRUE 0.875 0 0
 1052773 1052774 BAB1_0020 BAB1_0021 ivd FALSE 0.079 -387 0
 1052774 1052775 BAB1_0021 BAB1_2187 tRNA-Ala4 FALSE 0.153 222 0
 1052775 1052776 BAB1_2187 BAB1_0022 tRNA-Ala4 FALSE 0.146 226 0
 1052777 1052778 BAB1_0023 BAB1_0024 aroA TRUE 0.995 -3 371.115
 1052778 1052779 BAB1_0024 BAB1_0025 rpsA TRUE 0.925 216 692.457
 1052782 1052783 BAB1_0028 BAB1_0029 recR TRUE 0.564 16 -2.455
 1052783 1052784 BAB1_0029 BAB1_0030 recR TRUE 0.973 131 1157.581
 1052784 1052785 BAB1_0030 BAB1_0031 TRUE 0.983 25 307.435
 1052785 1052786 BAB1_0031 BAB1_2188 ffs FALSE 0.32 107 0
 1052787 1052788 BAB1_0032 BAB1_0033 TRUE 0.824 29 11.494
 1052789 1052790 BAB1_0034 BAB1_0035 pheA TRUE 0.844 89 20.086
 1052793 1052794 BAB1_0038 BAB1_0039 qoxB FALSE 0.405 80 0
 1052794 1052795 BAB1_0039 BAB1_0040 qoxB TRUE 0.637 15 0
 1052795 1052796 BAB1_0040 BAB1_0041 TRUE 0.842 4 0
 1052796 1052797 BAB1_0041 BAB1_0042 qoxD TRUE 0.999 0 477.893
 1052799 1052800 BAB1_0044 BAB1_0045 FALSE 0.03 485 0
 1052800 1052801 BAB1_0045 BAB1_0046 TRUE 0.81 189 82.762
 1052801 1052802 BAB1_0046 BAB1_0047 FALSE 0.154 145 -1.632
 1052803 1052804 BAB1_0048 BAB1_0049 FALSE 0.486 70 0.006
 1052804 1052805 BAB1_0049 BAB1_0050 FALSE 0.002 338 0.011
 1052805 1052806 BAB1_0050 BAB1_0051 TRUE 0.817 11 0.011
 1052806 1052807 BAB1_0051 BAB1_0052 FALSE 0.381 135 0.011
 1052807 1052808 BAB1_0052 BAB1_0053 FALSE 0.048 221 0.011
 1052810 1052811 BAB1_0055 BAB1_0056 pgm TRUE 0.511 56 0.006
 1052811 1052812 BAB1_0056 BAB1_0057 FALSE 0.374 -25 0.006
 1052813 1052814 BAB1_0058 BAB1_0059 FALSE 0.267 73 -1.572
 1052814 1052815 BAB1_0059 BAB1_0060 FALSE 0.058 100 -5.793
 1052815 1052816 BAB1_0060 BAB1_0061 FALSE 0.443 20 -0.775
 1052816 1052817 BAB1_0061 BAB1_0062 TRUE 0.559 62 0.011
 1052817 1052818 BAB1_0062 BAB1_0063 FALSE 0.338 166 0.011
 1052818 1052819 BAB1_0063 BAB1_0064 TRUE 0.689 15 0.006
 1052819 1052820 BAB1_0064 BAB1_0065 FALSE 0.125 182 -1.395
 1052821 1052822 BAB1_0066 BAB1_0067 TRUE 0.998 0 289.685
 1052822 1052823 BAB1_0067 BAB1_0068 TRUE 0.904 26 24.936
 1052824 1052825 BAB1_0069 BAB1_0070 FALSE 0.09 209 -1.726
 1052828 1052829 BAB1_0073 BAB1_0074 FALSE 0.411 34 3.267
 1052829 1052830 BAB1_0074 BAB1_0075 FALSE 0.434 260 35.067
 1052830 1052831 BAB1_0075 BAB1_0076 FALSE 0.001 448 5.418
 1052831 1052832 BAB1_0076 BAB1_0077 phhB TRUE 0.716 88 10.151
 1052833 1052834 BAB1_0078 BAB1_0079 FALSE 0.101 -145 0
 1052835 1052836 BAB1_0080 BAB1_0081 TRUE 0.52 181 10.33
 1052837 1052838 BAB1_0082 BAB1_0083 TRUE 0.999 -3 458.557
 1052838 1052839 BAB1_0083 BAB1_0084 FALSE 0.045 234 3.184
 1052839 1052840 BAB1_0084 BAB1_0085 pat FALSE 0.293 115 0
 1052840 1052841 BAB1_0085 BAB1_0086 pat pat FALSE 0.491 -12 0
 1052842 1052843 BAB1_0087 BAB1_0088 FALSE 0.001 550 6.02
 1052843 1052844 BAB1_0088 BAB1_0089 FALSE 0.287 153 0.005
 1052844 1052845 BAB1_0089 BAB1_0090 FALSE 0.455 -16 0.005
 1052846 1052847 BAB1_0091 BAB1_0092 ccmA ccmB TRUE 0.999 0 546.846
 1052847 1052848 BAB1_0092 BAB1_0093 ccmB ccmC TRUE 0.995 58 558.806
 1052848 1052849 BAB1_0093 BAB1_0094 ccmC TRUE 0.947 -3 7.603
 1052849 1052850 BAB1_0094 BAB1_0095 TRUE 0.954 -3 10.405
 1052853 1052854 BAB1_0098 BAB1_0099 FALSE 0.437 105 0.011
 1052854 1052855 BAB1_0099 BAB1_0100 FALSE 0.043 175 -5.786
 1052858 1052859 BAB1_0103 BAB1_0104 FALSE 0.019 278 -0.91
 1052859 1052860 BAB1_0104 BAB1_0105 TRUE 0.968 95 289.361
 1052860 1052861 BAB1_0105 BAB1_0106 cysW-1 TRUE 0.985 -10 429.088
 1052861 1052862 BAB1_0106 BAB1_0107 cysW-1 TRUE 0.987 98 403.278
 1052862 1052863 BAB1_0107 BAB1_0108 FALSE 0.001 791 -4.561
 1052863 1052864 BAB1_0108 BAB1_0109 pncB FALSE 0.095 90 -5.174
 1052865 1052866 BAB1_0110 BAB1_0111 FALSE 0.045 110 -7.558
 1052866 1052867 BAB1_0111 BAB1_0112 cscK FALSE 0.199 23 -6.191
 1052867 1052868 BAB1_0112 BAB1_0113 cscK FALSE 0.104 91 -5.696
 1052868 1052869 BAB1_0113 BAB1_0114 FALSE 0.029 121 -6.681
 1052869 1052870 BAB1_0114 BAB1_0115 FALSE 0.38 206 -0.242
 1052870 1052871 BAB1_0115 BAB1_0116 TRUE 0.539 267 1.507
 1052871 1052872 BAB1_0116 BAB1_0117 FALSE 0.005 232 -8.191
 1052872 1052873 BAB1_0117 BAB1_0118 FALSE 0.09 39 -6.808
 1052874 1052875 BAB1_0119 BAB1_0120 TRUE 0.514 82 0.011
 1052875 1052876 BAB1_0120 BAB1_0121 FALSE 0.408 142 -14.64
 1052877 1052878 BAB1_0122 BAB1_0123 TRUE 0.505 60 0.006
 1052878 1052879 BAB1_0123 BAB1_0124 FALSE 0.393 101 0.006
 1052879 1052880 BAB1_0124 BAB1_0125 FALSE 0.382 89 0
 1052880 1052881 BAB1_0125 BAB1_0126 TRUE 0.831 -3 0
 1052881 1052882 BAB1_0126 BAB1_0127 TRUE 0.875 0 0
 1052882 1052883 BAB1_0127 BAB1_0128 TRUE 0.724 0 -5.976
 1052883 1052884 BAB1_0128 BAB1_0129 TRUE 0.947 34 82.737
 1052885 1052886 BAB1_0130 BAB1_0131 FALSE 0.136 -88 0
 1052886 1052887 BAB1_0131 BAB1_0132 FALSE 0.362 95 0
 1052887 1052888 BAB1_0132 BAB1_0133 FALSE 0.371 92 0
 1052888 1052889 BAB1_0133 BAB1_0134 TRUE 0.502 32 0
 1052889 1052890 BAB1_0134 BAB1_0135 FALSE 0.436 66 0
 1052890 1052891 BAB1_0135 BAB1_0136 FALSE 0.248 196 0.01
 1052894 1052895 BAB1_0139 BAB1_0140 TRUE 0.79 109 38.631
 1052895 1052896 BAB1_0140 BAB1_0141 trpS TRUE 0.726 58 7.96
 1052896 1052897 BAB1_0141 BAB1_0142 trpS mviN TRUE 0.755 7 24.437
 1052897 1052898 BAB1_0142 BAB1_0143 mviN TRUE 0.934 14 19.644
 1052898 1052899 BAB1_0143 BAB1_0144 FALSE 0.272 143 0
 1052899 1052900 BAB1_0144 BAB1_0145 FALSE 0.087 -222 0
 1052902 1052903 BAB1_0147 BAB1_0148 lspA FALSE 0.002 323 -18.076
 1052903 1052904 BAB1_0148 BAB1_0149 lspA TRUE 0.944 2 -6.379
 1052904 1052905 BAB1_0149 BAB1_0150 TRUE 0.971 -3 20.341
 1052905 1052906 BAB1_0150 BAB1_0151 FALSE 0.095 113 -0.789
 1052906 1052907 BAB1_0151 BAB1_0152 ihfB TRUE 0.956 10 25.079
 1052907 1052908 BAB1_0152 BAB1_0153 ihfB sppA TRUE 0.859 47 18.553
 1052909 1052910 BAB1_0154 BAB1_0155 FALSE 0.218 324 32.567
 1052910 1052911 BAB1_0155 BAB1_0156 TRUE 0.993 12 442.014
 1052911 1052912 BAB1_0156 BAB1_0157 rpoN TRUE 0.838 296 676.372
 1052914 1052915 BAB1_0159 BAB1_0160 TRUE 0.923 103 109.624
 1052916 1052917 BAB1_0161 BAB1_0162 TRUE 0.781 106 23.413
 1052917 1052918 BAB1_0162 BAB1_0163 TRUE 0.566 31 0.006
 1052918 1052919 BAB1_0163 BAB1_0164 FALSE 0.325 -31 0.006
 1052921 1052922 BAB1_0166 BAB1_0167 TRUE 0.852 -3 0.005
 1052924 1052925 BAB1_0169 BAB1_0170 grpE FALSE 0.013 133 -16.856
 1052925 1052926 BAB1_0170 BAB1_0171 grpE hrcA TRUE 0.964 106 502.68
 1052927 1052928 BAB1_0172 BAB1_0173 rph FALSE 0.232 174 0
 1052928 1052929 BAB1_0173 BAB1_0174 TRUE 0.764 9 0
 1052929 1052930 BAB1_0174 BAB1_0175 TRUE 0.855 3 0
 1052930 1052931 BAB1_0175 BAB1_0176 TRUE 0.978 54 612.5
 1052931 1052932 BAB1_0176 BAB1_0177 FALSE 0.052 66 -35.234
 1052932 1052933 BAB1_0177 BAB1_0178 TRUE 0.991 -3 112.732
 1052933 1052934 BAB1_0178 BAB1_0179 cysG FALSE 0.006 220 -15.06
 1052934 1052935 BAB1_0179 BAB1_0180 cysG TRUE 0.898 18 22.686
 1052935 1052936 BAB1_0180 BAB1_0181 cysI TRUE 0.942 21 53.273
 1052936 1052937 BAB1_0181 BAB1_0182 cysI cysH TRUE 0.982 -10 556.793
 1052937 1052938 BAB1_0182 BAB1_0183 cysH TRUE 0.785 53 29.292
 1052938 1052939 BAB1_0183 BAB1_0184 FALSE 0.177 68 -3.879
 1052945 1052946 BAB1_0190 BAB1_0191 FALSE 0.02 115 -7.751
 1052948 1052949 BAB1_0193 BAB1_0194 TRUE 0.997 0 258.76
 1052949 1052950 BAB1_0194 BAB1_0195 TRUE 0.941 48 28.246
 1052950 1052951 BAB1_0195 BAB1_2189 tRNA-Pro1 FALSE 0.278 133 0
 1052953 1052954 BAB1_0197 BAB1_0198 FALSE 0.347 -25 0.001
 1052954 1052955 BAB1_0198 BAB1_0199 glpR FALSE 0.186 222 0.006
 1052955 1052956 BAB1_0199 BAB1_0200 glpR glpD TRUE 0.919 82 67.116
 1052956 1052957 BAB1_0200 BAB1_0201 glpD FALSE 0.067 219 -3.288
 1052957 1052958 BAB1_0201 BAB1_0202 FALSE 0.262 149 0
 1052958 1052959 BAB1_0202 BAB1_0203 FALSE 0.108 -129 0
 1052959 1052960 BAB1_0203 BAB1_0204 FALSE 0.03 481 0
 1052960 1052961 BAB1_0204 BAB1_0205 FALSE 0.376 91 0
 1052961 1052962 BAB1_0205 BAB1_0206 TRUE 0.534 26 0
 1052963 1052964 BAB1_0207 BAB1_0208 TRUE 0.831 -3 0
 1052964 1052965 BAB1_0208 BAB1_0209 FALSE 0.346 -22 0
 1052966 1052967 BAB1_0210 BAB1_0211 TRUE 0.739 13 0.006
 1052968 1052969 BAB1_0212 BAB1_0213 TRUE 0.916 -3 55.118
 1052969 1052970 BAB1_0213 BAB1_0214 TRUE 0.991 -3 87.222
 1052970 1052971 BAB1_0214 BAB1_0215 TRUE 0.628 24 16.653
 1052971 1052972 BAB1_0215 BAB1_0216 TRUE 0.994 -3 223.277
 1052972 1052973 BAB1_0216 BAB1_0217 TRUE 0.997 2 616.375
 1052973 1052974 BAB1_0217 BAB1_0218 TRUE 0.993 -3 209.492
 1052974 1052975 BAB1_0218 BAB1_0219 TRUE 0.975 0 7.157
 1052976 1052977 BAB1_0220 BAB1_0221 FALSE 0.347 99 0
 1052978 1052979 BAB1_0222 BAB1_0223 FALSE 0.099 106 -4.943
 1052979 1052980 BAB1_0223 BAB1_0224 TRUE 0.997 -3 234.554
 1052980 1052981 BAB1_0224 BAB1_0225 TRUE 0.997 -3 221.531
 1052981 1052982 BAB1_0225 BAB1_0226 TRUE 0.946 73 200.914
 1052982 1052983 BAB1_0226 BAB1_0227 FALSE 0.114 186 -1.774
 1052983 1052984 BAB1_0227 BAB1_0228 FALSE 0.003 289 -1.243
 1052985 1052986 BAB1_0229 BAB1_0230 FALSE 0.307 -31 0.005
 1052986 1052987 BAB1_0230 BAB1_0231 soxD TRUE 0.993 19 168.989
 1052987 1052988 BAB1_0231 BAB1_0232 soxD TRUE 0.875 0 0
 1052988 1052989 BAB1_0232 BAB1_0233 FALSE 0.089 -214 0
 1052989 1052990 BAB1_0233 BAB1_0234 soxA TRUE 0.691 13 0
 1052990 1052991 BAB1_0234 BAB1_0235 soxA soxG TRUE 0.737 11 0
 1052992 1052993 BAB1_0236 BAB1_0237 TRUE 0.748 58 2.17
 1052994 1052995 BAB1_0238 BAB1_0239 TRUE 0.961 61 33.115
 1052995 1052996 BAB1_0239 BAB1_0240 TRUE 0.997 3 128.285
 1052996 1052997 BAB1_0240 BAB1_0241 TRUE 0.972 8 19.78
 1052997 1052998 BAB1_0241 BAB1_0242 TRUE 0.783 3 -1.266
 1052998 1052999 BAB1_0242 BAB1_0243 TRUE 0.95 -3 6.289
 1052999 1053000 BAB1_0243 BAB1_0244 TRUE 0.768 -7 2.397
 1053000 1053001 BAB1_0244 BAB1_0245 TRUE 0.882 3 0.006
 1053001 1053002 BAB1_0245 BAB1_0246 TRUE 0.871 4 0.006
 1053002 1053003 BAB1_0246 BAB1_0247 TRUE 0.976 41 132
 1053003 1053004 BAB1_0247 BAB1_0248 TRUE 0.967 14 74.646
 1053008 1053009 BAB1_0252 BAB1_0253 TRUE 0.888 1 0.006
 1053009 1053010 BAB1_0253 BAB1_0254 TRUE 0.855 -3 0.006
 1053010 1053011 BAB1_0254 BAB1_0255 TRUE 0.855 -3 0.006
 1053011 1053012 BAB1_0255 BAB1_0256 TRUE 0.831 -3 0
 1053012 1053013 BAB1_0256 BAB1_0257 FALSE 0.028