VIMSS Operon Predictions for Burkholderia phymatum STM815

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 3014666 3014667 BphyDRAFT_7153 BphyDRAFT_7154 TRUE 0.564 65 -3.546
 3014667 3014668 BphyDRAFT_7154 BphyDRAFT_7155 TRUE 0.541 74 -1.961
 3014668 3014669 BphyDRAFT_7155 BphyDRAFT_7156 TRUE 0.718 -99 -29.948
 3014669 3014670 BphyDRAFT_7156 BphyDRAFT_7157 TRUE 0.998 0 481.482
 3014670 3014671 BphyDRAFT_7157 BphyDRAFT_7158 TRUE 0.985 -88 355.1
 3014671 3014672 BphyDRAFT_7158 BphyDRAFT_7783 FALSE 0.176 -124 0
 3014673 3014674 BphyDRAFT_7159 BphyDRAFT_7160 TRUE 0.979 -3 10.779
 3014674 3014675 BphyDRAFT_7160 BphyDRAFT_7161 FALSE 0.398 111 11.225
 3014675 3014676 BphyDRAFT_7161 BphyDRAFT_7162 FALSE 0.146 201 10.967
 3014676 3014677 BphyDRAFT_7162 BphyDRAFT_7163 FALSE 0.466 132 -1.071
 3014677 3014678 BphyDRAFT_7163 BphyDRAFT_7164 TRUE 0.999 0 143.378
 3014679 3014680 BphyDRAFT_7165 BphyDRAFT_7166 FALSE 0.19 245 -20.361
 3014680 3014681 BphyDRAFT_7166 BphyDRAFT_7167 TRUE 0.999 11 428.817
 3014681 3014682 BphyDRAFT_7167 BphyDRAFT_7168 FALSE 0.269 259 151.703
 3014683 3014684 BphyDRAFT_7169 BphyDRAFT_7170 TRUE 0.988 3 166.521
 3014684 3014685 BphyDRAFT_7170 BphyDRAFT_7171 FALSE 0 539 0.748
 3014685 3014686 BphyDRAFT_7171 BphyDRAFT_7172 TRUE 0.856 228 70.361
 3014686 3014687 BphyDRAFT_7172 BphyDRAFT_7173 TRUE 0.998 28 468.667
 3014687 3014688 BphyDRAFT_7173 BphyDRAFT_7174 TRUE 0.998 23 399.542
 3014688 3014689 BphyDRAFT_7174 BphyDRAFT_7175 TRUE 0.999 0 475.087
 3014690 3014691 BphyDRAFT_7784 BphyDRAFT_7176 TRUE 0.936 -3 4.388
 3014691 3014692 BphyDRAFT_7176 BphyDRAFT_7177 FALSE 0.052 331 7.223
 3014694 3014695 BphyDRAFT_7179 BphyDRAFT_7180 FALSE 0.347 166 8.209
 3014695 3014696 BphyDRAFT_7180 BphyDRAFT_7181 FALSE 0.014 235 -5.445
 3014698 3014699 BphyDRAFT_R0004 BphyDRAFT_7183 FALSE 0.114 105 0
 3014700 3014701 BphyDRAFT_7184 BphyDRAFT_7185 FALSE 0.031 90 -0.098
 3014701 3014702 BphyDRAFT_7185 BphyDRAFT_7186 TRUE 0.643 74 10.088
 3014703 3014704 BphyDRAFT_7187 BphyDRAFT_R0003 FALSE 0.016 255 0
 3014704 3014705 BphyDRAFT_R0003 BphyDRAFT_7188 FALSE 0.152 79 0
 3014705 3014706 BphyDRAFT_7188 BphyDRAFT_7189 FALSE 0.083 137 0
 3014706 3014707 BphyDRAFT_7189 BphyDRAFT_7190 FALSE 0.158 75 0
 3014707 3014708 BphyDRAFT_7190 BphyDRAFT_7785 FALSE 0.004 371 0
 3014708 3014709 BphyDRAFT_7785 BphyDRAFT_7786 FALSE 0.003 409 0
 3014711 3014712 BphyDRAFT_7192 BphyDRAFT_7193 TRUE 0.632 76 4.404
 3014714 3014715 BphyDRAFT_7195 BphyDRAFT_7196 TRUE 0.671 124 -14.447
 3014715 3014716 BphyDRAFT_7196 BphyDRAFT_7197 TRUE 0.997 -3 492.963
 3014716 3014717 BphyDRAFT_7197 BphyDRAFT_7198 TRUE 0.997 90 637.219
 3014717 3014718 BphyDRAFT_7198 BphyDRAFT_7199 TRUE 0.961 115 576.313
 3014718 3014719 BphyDRAFT_7199 BphyDRAFT_7200 TRUE 0.997 25 577.36
 3014719 3014720 BphyDRAFT_7200 BphyDRAFT_7201 TRUE 0.899 40 -39.357
 3014720 3014721 BphyDRAFT_7201 BphyDRAFT_7202 FALSE 0.07 211 0.165
 3014723 3014724 BphyDRAFT_7204 BphyDRAFT_7205 TRUE 0.933 -22 9.291
 3014726 3014727 BphyDRAFT_7206 BphyDRAFT_7788 FALSE 0 506 0.193
 3014730 3014731 BphyDRAFT_7208 BphyDRAFT_7209 TRUE 0.994 -10 126.481
 3014731 3014732 BphyDRAFT_7209 BphyDRAFT_7210 TRUE 0.939 119 88.049
 3014733 3014734 BphyDRAFT_7211 BphyDRAFT_7212 TRUE 0.781 16 4.643
 3014734 3014735 BphyDRAFT_7212 BphyDRAFT_7213 TRUE 0.561 142 9.987
 3014736 3014737 BphyDRAFT_7214 BphyDRAFT_7215 TRUE 0.978 37 84.731
 3014739 3014740 BphyDRAFT_7217 BphyDRAFT_7218 FALSE 0.027 274 0
 3014742 3014743 BphyDRAFT_7220 BphyDRAFT_7221 TRUE 0.769 94 190.802
 3014743 3014744 BphyDRAFT_7221 BphyDRAFT_R0001 FALSE 0.076 152 0
 3014744 3014745 BphyDRAFT_R0001 BphyDRAFT_7222 FALSE 0.001 950 0
 3014745 3014746 BphyDRAFT_7222 BphyDRAFT_7223 TRUE 0.945 -3 0
 3014746 3014747 BphyDRAFT_7223 BphyDRAFT_7224 TRUE 0.859 63 0.548
 3014747 3014748 BphyDRAFT_7224 BphyDRAFT_7225 FALSE 0.051 231 0
 3014748 3014749 BphyDRAFT_7225 BphyDRAFT_7226 TRUE 0.89 50 12.388
 3014749 3014750 BphyDRAFT_7226 BphyDRAFT_7227 TRUE 0.725 2 0
 3014750 3014751 BphyDRAFT_7227 BphyDRAFT_7228 FALSE 0.161 73 0
 3014751 3014752 BphyDRAFT_7228 BphyDRAFT_7229 TRUE 0.965 -3 29.729
 3014753 3014754 BphyDRAFT_7230 BphyDRAFT_7231 FALSE 0.167 69 0
 3014754 3014755 BphyDRAFT_7231 BphyDRAFT_7790 FALSE 0.136 89 0
 3014755 3014756 BphyDRAFT_7790 BphyDRAFT_7232 FALSE 0.011 277 0
 3014757 3014758 BphyDRAFT_7233 BphyDRAFT_7234 FALSE 0.034 210 0
 3014758 3014759 BphyDRAFT_7234 BphyDRAFT_7235 TRUE 0.569 27 0.892
 3014759 3014760 BphyDRAFT_7235 BphyDRAFT_7791 FALSE 0.365 17 0
 3014761 3014762 BphyDRAFT_7236 BphyDRAFT_7237 TRUE 0.997 -3 131.034
 3014762 3014763 BphyDRAFT_7237 BphyDRAFT_7238 TRUE 0.997 -3 126.891
 3014763 3014764 BphyDRAFT_7238 BphyDRAFT_7239 TRUE 0.966 61 117.266
 3014764 3014765 BphyDRAFT_7239 BphyDRAFT_7240 FALSE 0.002 502 0
 3014765 3014766 BphyDRAFT_7240 BphyDRAFT_7241 TRUE 0.724 72 6.011
 3014767 3014768 BphyDRAFT_7242 BphyDRAFT_7243 FALSE 0.096 125 0.018
 3014770 3014771 BphyDRAFT_7792 BphyDRAFT_7245 FALSE 0.217 -57 0
 3014771 3014772 BphyDRAFT_7245 BphyDRAFT_7793 FALSE 0.007 315 0
 3014772 3014773 BphyDRAFT_7793 BphyDRAFT_7246 FALSE 0.122 98 0
 3014773 3014774 BphyDRAFT_7246 BphyDRAFT_7247 TRUE 0.936 67 5.921
 3014774 3014775 BphyDRAFT_7247 BphyDRAFT_7248 TRUE 0.745 11 0.527
 3014779 3014780 BphyDRAFT_7252 BphyDRAFT_7253 FALSE 0.047 190 0
 3014781 3014782 BphyDRAFT_7254 BphyDRAFT_7794 FALSE 0.183 59 0
 3014784 3014785 BphyDRAFT_7256 BphyDRAFT_7257 FALSE 0.201 57 -0.941
 3014786 3014787 BphyDRAFT_7258 BphyDRAFT_7259 TRUE 0.989 -3 33.46
 3014787 3014788 BphyDRAFT_7259 BphyDRAFT_7260 TRUE 0.995 13 71.975
 3014789 3014790 BphyDRAFT_7261 BphyDRAFT_7262 FALSE 0.117 103 0
 3014790 3014791 BphyDRAFT_7262 BphyDRAFT_7263 FALSE 0.113 113 -0.086
 3014794 3014795 BphyDRAFT_7795 BphyDRAFT_7796 FALSE 0.236 40 0
 3014795 3014796 BphyDRAFT_7796 BphyDRAFT_7266 FALSE 0.142 85 0
 3014796 3014797 BphyDRAFT_7266 BphyDRAFT_7267 FALSE 0.473 105 2.041
 3014798 3014799 BphyDRAFT_7268 BphyDRAFT_7269 TRUE 0.723 58 0.327
 3014799 3014800 BphyDRAFT_7269 BphyDRAFT_7270 FALSE 0.121 99 0
 3014801 3014802 BphyDRAFT_7797 BphyDRAFT_7271 FALSE 0.192 55 0
 3014802 3014803 BphyDRAFT_7271 BphyDRAFT_7272 FALSE 0.181 60 0
 3014803 3014804 BphyDRAFT_7272 BphyDRAFT_7273 FALSE 0.028 221 0
 3014805 3014806 BphyDRAFT_7274 BphyDRAFT_7275 FALSE 0.19 56 0
 3014806 3014807 BphyDRAFT_7275 BphyDRAFT_7276 FALSE 0.002 487 0
 3014807 3014808 BphyDRAFT_7276 BphyDRAFT_7277 FALSE 0.057 174 0
 3014808 3014809 BphyDRAFT_7277 BphyDRAFT_7278 FALSE 0.049 197 -1.958
 3014811 3014812 BphyDRAFT_7280 BphyDRAFT_7798 FALSE 0.127 95 0
 3014812 3014813 BphyDRAFT_7798 BphyDRAFT_7281 FALSE 0.002 431 0
 3014813 3014814 BphyDRAFT_7281 BphyDRAFT_7282 TRUE 0.592 68 3.902
 3014814 3014815 BphyDRAFT_7282 BphyDRAFT_7283 TRUE 0.938 24 4.976
 3014818 3014819 BphyDRAFT_7284 BphyDRAFT_7285 FALSE 0.081 142 0
 3014820 3014821 BphyDRAFT_7801 BphyDRAFT_7286 FALSE 0.241 -90 0
 3014821 3014822 BphyDRAFT_7286 BphyDRAFT_7287 FALSE 0.219 92 0
 3014822 3014823 BphyDRAFT_7287 BphyDRAFT_7288 FALSE 0.42 61 0.193
 3014824 3014825 BphyDRAFT_7289 BphyDRAFT_7290 TRUE 0.923 -3 45.196
 3014826 3014827 BphyDRAFT_7291 BphyDRAFT_7292 TRUE 0.996 -3 46.263
 3014827 3014828 BphyDRAFT_7292 BphyDRAFT_7293 TRUE 0.998 -3 61.725
 3014828 3014829 BphyDRAFT_7293 BphyDRAFT_7294 TRUE 0.999 0 106.284
 3014830 3014831 BphyDRAFT_7295 BphyDRAFT_7296 TRUE 0.967 -19 132.119
 3014831 3014832 BphyDRAFT_7296 BphyDRAFT_7297 TRUE 0.999 1 117.728
 3014832 3014833 BphyDRAFT_7297 BphyDRAFT_7298 TRUE 0.998 -3 71.967
 3014833 3014834 BphyDRAFT_7298 BphyDRAFT_7299 FALSE 0.12 161 0
 3014835 3014836 BphyDRAFT_7300 BphyDRAFT_7301 FALSE 0.316 52 0
 3014836 3014837 BphyDRAFT_7301 BphyDRAFT_7302 FALSE 0.004 453 0
 3014837 3014838 BphyDRAFT_7302 BphyDRAFT_7303 TRUE 0.926 30 27.922
 3014838 3014839 BphyDRAFT_7303 BphyDRAFT_7304 TRUE 0.988 -3 28.172
 3014839 3014840 BphyDRAFT_7304 BphyDRAFT_7305 TRUE 0.979 11 82.934
 3014841 3014842 BphyDRAFT_7306 BphyDRAFT_7802 TRUE 0.847 -3 0
 3014842 3014843 BphyDRAFT_7802 BphyDRAFT_7307 TRUE 0.964 -3 2.286
 3014843 3014844 BphyDRAFT_7307 BphyDRAFT_7308 TRUE 0.995 4 135.624
 3014844 3014845 BphyDRAFT_7308 BphyDRAFT_7309 TRUE 0.87 -16 17.288
 3014846 3014847 BphyDRAFT_7310 BphyDRAFT_7311 FALSE 0.007 863 -4.597
 3014851 3014852 BphyDRAFT_7315 BphyDRAFT_7316 FALSE 0.179 61 0
 3014852 3014853 BphyDRAFT_7316 BphyDRAFT_7317 FALSE 0 1332 0
 3014856 3014857 BphyDRAFT_7320 BphyDRAFT_7321 TRUE 0.547 -7 -0.256
 3014857 3014858 BphyDRAFT_7321 BphyDRAFT_7322 FALSE 0.005 365 -1.299
 3014858 3014859 BphyDRAFT_7322 BphyDRAFT_7323 FALSE 0.16 102 -0.094
 3014860 3014861 BphyDRAFT_7324 BphyDRAFT_7325 TRUE 0.904 7 0
 3014861 3014862 BphyDRAFT_7325 BphyDRAFT_7326 TRUE 0.702 63 0
 3014863 3014864 BphyDRAFT_7327 BphyDRAFT_7328 TRUE 0.916 -3 2.54
 3014864 3014865 BphyDRAFT_7328 BphyDRAFT_7329 FALSE 0.426 46 -1.103
 3014865 3014866 BphyDRAFT_7329 BphyDRAFT_7330 TRUE 0.996 0 38.55
 3014866 3014867 BphyDRAFT_7330 BphyDRAFT_7331 FALSE 0.041 42 -1.687
 3014867 3014868 BphyDRAFT_7331 BphyDRAFT_7332 FALSE 0.089 13 -1.116
 3014868 3014869 BphyDRAFT_7332 BphyDRAFT_7333 TRUE 0.782 -3 1.303
 3014869 3014870 BphyDRAFT_7333 BphyDRAFT_7334 FALSE 0.288 82 -0.025
 3014871 3014872 BphyDRAFT_7335 BphyDRAFT_7336 FALSE 0.019 264 0
 3014873 3014874 BphyDRAFT_7337 BphyDRAFT_7338 FALSE 0.499 0 0
 3014874 3014875 BphyDRAFT_7338 BphyDRAFT_7803 FALSE 0.016 98 -1.218
 3014875 3014876 BphyDRAFT_7803 BphyDRAFT_7339 FALSE 0.47 -3 0
 3014876 3014877 BphyDRAFT_7339 BphyDRAFT_7804 FALSE 0.341 20 0
 3014878 3014879 BphyDRAFT_7340 BphyDRAFT_7341 FALSE 0.064 168 0
 3014881 3014882 BphyDRAFT_7343 BphyDRAFT_7344 FALSE 0.004 251 -3.69
 3014882 3014883 BphyDRAFT_7344 BphyDRAFT_7345 FALSE 0.398 44 -0.631
 3014883 3014884 BphyDRAFT_7345 BphyDRAFT_7346 TRUE 0.509 136 -12.828
 3014884 3014885 BphyDRAFT_7346 BphyDRAFT_7347 FALSE 0.014 277 -1.927
 3014885 3014886 BphyDRAFT_7347 BphyDRAFT_7348 TRUE 0.975 -3 35.007
 3014887 3014888 BphyDRAFT_7349 BphyDRAFT_7350 TRUE 0.971 95 268.134
 3014888 3014889 BphyDRAFT_7350 BphyDRAFT_7351 TRUE 0.998 -3 188.553
 3014889 3014890 BphyDRAFT_7351 BphyDRAFT_7352 FALSE 0.01 136 -2.426
 3014894 3014895 BphyDRAFT_7355 BphyDRAFT_7806 FALSE 0.268 32 0
 3014896 3014897 BphyDRAFT_7356 BphyDRAFT_7357 FALSE 0.161 73 0
 3014897 3014898 BphyDRAFT_7357 BphyDRAFT_7807 FALSE 0.264 -25 0
 3014898 3014899 BphyDRAFT_7807 BphyDRAFT_7358 FALSE 0.47 -3 0
 3014900 3014901 BphyDRAFT_7359 BphyDRAFT_7808 FALSE 0.47 -3 0
 3014902 3014903 BphyDRAFT_7360 BphyDRAFT_7361 FALSE 0.188 62 -0.119
 3014903 3014904 BphyDRAFT_7361 BphyDRAFT_7362 FALSE 0.014 108 -2.962
 3014905 3014906 BphyDRAFT_7363 BphyDRAFT_7364 FALSE 0.394 66 0.268
 3014907 3014908 BphyDRAFT_7365 BphyDRAFT_7809 FALSE 0.004 372 0
 3014908 3014909 BphyDRAFT_7809 BphyDRAFT_7366 FALSE 0.306 25 0
 3014909 3014910 BphyDRAFT_7366 BphyDRAFT_7367 FALSE 0.117 103 0
 3014910 3014911 BphyDRAFT_7367 BphyDRAFT_7368 FALSE 0.013 319 0
 3014911 3014912 BphyDRAFT_7368 BphyDRAFT_7369 FALSE 0.051 186 0
 3014916 3014917 BphyDRAFT_7810 BphyDRAFT_7811 FALSE 0.112 107 0
 3014917 3014918 BphyDRAFT_7811 BphyDRAFT_7373 FALSE 0.158 75 0
 3014918 3014919 BphyDRAFT_7373 BphyDRAFT_7374 FALSE 0.101 313 0
 3014919 3014920 BphyDRAFT_7374 BphyDRAFT_7375 TRUE 0.602 58 3.117
 3014920 3014921 BphyDRAFT_7375 BphyDRAFT_7376 TRUE 0.781 100 -1.745
 3014922 3014923 BphyDRAFT_7377 BphyDRAFT_7378 FALSE 0.107 186 0
 3014923 3014924 BphyDRAFT_7378 BphyDRAFT_7379 FALSE 0.179 117 -0.293
 3014924 3014925 BphyDRAFT_7379 BphyDRAFT_7812 FALSE 0.144 136 0
 3014925 3014926 BphyDRAFT_7812 BphyDRAFT_7380 FALSE 0.108 111 0
 3014929 3014930 BphyDRAFT_7382 BphyDRAFT_7383 TRUE 0.692 23 3.322
 3014930 3014931 BphyDRAFT_7383 BphyDRAFT_7384 FALSE 0.001 332 -5.095
 3014932 3014933 BphyDRAFT_7385 BphyDRAFT_7386 TRUE 0.53 89 3.664
 3014934 3014935 BphyDRAFT_7387 BphyDRAFT_7388 FALSE 0.136 283 -0.052
 3014935 3014936 BphyDRAFT_7388 BphyDRAFT_7389 TRUE 0.839 -159 39.687
 3014936 3014937 BphyDRAFT_7389 BphyDRAFT_7390 FALSE 0.147 159 0
 3014937 3014938 BphyDRAFT_7390 BphyDRAFT_7391 FALSE 0.005 429 0
 3014938 3014939 BphyDRAFT_7391 BphyDRAFT_7392 FALSE 0.155 77 0
 3014939 3014940 BphyDRAFT_7392 BphyDRAFT_7393 FALSE 0.015 259 0
 3014940 3014941 BphyDRAFT_7393 BphyDRAFT_7394 FALSE 0.041 386 -0.748
 3014941 3014942 BphyDRAFT_7394 BphyDRAFT_7395 TRUE 0.921 3 30.003
 3014942 3014943 BphyDRAFT_7395 BphyDRAFT_7396 FALSE 0