VIMSS Operon Predictions for Bacteroides fragilis

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 730391 730392 BF0001 BF0002 FALSE 0.239 155 0.009
 730392 730393 BF0002 BF0003 TRUE 0.852 -7 0.009
 730393 730394 BF0003 BF0004 TRUE 0.933 14 0.009
 730394 730395 BF0004 BF0005 TRUE 0.736 34 0
 730395 730396 BF0005 BF0006 TRUE 0.757 32 0
 730396 730397 BF0006 BF0007 TRUE 0.932 12 0.009
 730397 730398 BF0007 BF0008 FALSE 0.035 460 0
 730398 730399 BF0008 BF0009 TRUE 0.831 -3 0
 730399 730400 BF0009 BF0010 TRUE 0.807 -19 0.009
 730400 730401 BF0010 BF0011 TRUE 0.886 -3 0.009
 730401 730402 BF0011 BF0012 TRUE 0.993 5 7.695
 730404 730405 BF0014 BF0015 TRUE 0.733 58 0.323
 730405 730406 BF0015 BF0016 FALSE 0.312 45 -1.174
 730406 730407 BF0016 BF0017 TRUE 0.717 18 -1.116
 730408 730409 BF0018 BF0019 TRUE 0.911 1 0.009
 730409 730410 BF0019 BF0020 FALSE 0.457 201 -2.491
 730413 730414 BF0023 BF0024 TRUE 0.956 7 0.401
 730414 730415 BF0024 BF0025 FALSE 0.403 104 -2.819
 730416 730417 BF0026 BF0027 TRUE 0.78 37 0.009
 730418 730419 BF0028 BF0029 FALSE 0.072 118 -1.116
 730419 730420 BF0029 BF0030 TRUE 0.85 56 0.401
 730421 730422 BF0031 BF0032 FALSE 0.421 89 0
 730422 730423 BF0032 BF0033 TRUE 0.546 53 0
 730423 730424 BF0033 BF0034 FALSE 0.041 389 0
 730425 730426 BF0035 BF0036 FALSE 0.484 105 0.009
 730426 730427 BF0036 BF0037 FALSE 0.116 119 -4.741
 730427 730428 BF0037 BF0038 FALSE 0.047 171 -4.741
 730428 730429 BF0038 BF0039 FALSE 0.233 172 0.009
 730431 730432 BF0041 BF0042 FALSE 0.153 89 -4.741
 730432 730433 BF0042 BF0043 FALSE 0.02 244 -4.741
 730433 730434 BF0043 BF0044 TRUE 0.555 77 0.009
 730434 730435 BF0044 BF0045 FALSE 0.025 222 -4.741
 730435 730436 BF0045 BF0046 FALSE 0.096 131 -4.741
 730436 730437 BF0046 BF0047 TRUE 0.55 -3 -4.741
 730437 730438 BF0047 BF0048 FALSE 0.311 129 0
 730438 730439 BF0048 BF0049 TRUE 0.61 44 0
 730439 730440 BF0049 BF0050 TRUE 0.863 29 0.009
 730440 730441 BF0050 BF0051 FALSE 0.438 80 0
 730441 730442 BF0051 BF0052 FALSE 0.374 105 0
 730442 730443 BF0052 BF0053 FALSE 0.31 150 0.009
 730443 730444 BF0053 BF0054 TRUE 0.913 0 -1.255
 730444 730445 BF0054 BF0055 FALSE 0.383 101 0
 730445 730446 BF0055 BF0056 TRUE 0.886 7 0
 730446 730447 BF0056 BF0057 TRUE 0.991 8 23.886
 730447 730448 BF0057 BF0058 TRUE 0.912 49 -2.086
 730448 730449 BF0058 BF0059 TRUE 0.908 0 -4.38
 730451 730452 BF0061 BF0062 TRUE 0.516 132 -2.687
 730452 730453 BF0062 BF0063 TRUE 0.923 -3 0.267
 730453 730454 BF0063 BF0064 FALSE 0.134 260 0.392
 730454 730455 BF0064 BF0065 FALSE 0.374 148 0.392
 730455 730456 BF0065 BF0066 TRUE 0.988 -3 7.673
 730456 730457 BF0066 BF0067 TRUE 0.987 7 2.956
 730457 730458 BF0067 BF0068 TRUE 0.642 68 0.32
 730460 730461 BFtRNA01 BF0070 FALSE 0.047 327 0
 730461 730462 BF0070 BF0071 FALSE 0.062 124 -1.228
 730462 730463 BF0071 BF0072 TRUE 0.958 67 122.959
 730463 730464 BF0072 BF0073 TRUE 0.975 27 4.139
 730465 730466 BF0074 BF0075 TRUE 0.879 0 -0.889
 730466 730467 BF0075 BF0076 TRUE 0.993 17 17.969
 730468 730469 BF0077 BF0078 TRUE 0.863 29 0.009
 730470 730471 BF0079 BF0080 TRUE 0.999 21 524.696
 730471 730472 BF0080 BF0081 TRUE 0.931 6 -0.49
 730472 730473 BF0081 BF0082 TRUE 0.95 9 0.143
 730473 730474 BF0082 BF0083 TRUE 0.892 -15 0.401
 730474 730475 BF0083 BF0084 TRUE 0.984 0 2.956
 730475 730476 BF0084 BF0085 TRUE 0.98 22 2.547
 730476 730477 BF0085 BF0086 TRUE 0.745 136 2.933
 730477 730478 BF0086 BF0087 TRUE 0.544 63 -0.162
 730479 730480 BF0088 BF0089 TRUE 0.991 13 0.401
 730481 730482 BF0090 BF0091 FALSE 0.058 270 0.401
 730484 730485 BF0093 BF0094 TRUE 0.889 9 0
 730485 730486 BF0094 BF0095 FALSE 0.092 222 0
 730486 730487 BF0095 BF0096 TRUE 0.967 -13 2.527
 730487 730488 BF0096 BF0097 TRUE 0.991 0 6.588
 730488 730489 BF0097 BF0098 TRUE 0.656 46 -4.485
 730489 730490 BF0098 BF0099 TRUE 0.897 53 -11.297
 730490 730491 BF0099 BF0100 TRUE 0.582 51 -10.468
 730491 730492 BF0100 BF0101 FALSE 0.033 498 0
 730495 730496 BF0104 BF0105 FALSE 0.102 215 0
 730496 730497 BF0105 BF0106 TRUE 0.898 14 0
 730497 730498 BF0106 BF0107 TRUE 0.831 -3 0
 730498 730499 BF0107 BF0108 TRUE 0.85 25 0
 730499 730500 BF0108 BF0109 FALSE 0.171 169 0
 730500 730501 BF0109 BF0110 TRUE 0.665 -57 0
 730502 730503 BF0111 BF0112 FALSE 0.109 209 0
 730503 730504 BF0112 BF0113 TRUE 0.861 0 0
 730504 730505 BF0113 BF0114 TRUE 0.831 -3 0
 730505 730506 BF0114 BF0115 TRUE 0.887 8 0
 730506 730507 BF0115 BF0116 TRUE 0.878 3 0
 730507 730508 BF0116 BF0117 TRUE 0.962 35 4.691
 730508 730509 BF0117 BF0118 TRUE 0.727 -19 0
 730509 730510 BF0118 BF0119 TRUE 0.886 7 0
 730510 730511 BF0119 BF0120 TRUE 0.757 32 0
 730511 730512 BF0120 BF0121 TRUE 0.987 4 4.691
 730512 730513 BF0121 BF0122 TRUE 0.713 24 -1.116
 730513 730514 BF0122 BF0123 FALSE 0.308 41 -4.741
 730514 730515 BF0123 BF0124 TRUE 0.905 -3 -2.186
 730515 730516 BF0124 BF0125 TRUE 0.991 11 5.083
 730516 730517 BF0125 BF0126 FALSE 0.117 202 0
 730517 730518 BF0126 BF0127 TRUE 0.724 35 0
 730518 730519 BF0127 BF0128 TRUE 0.878 3 0
 730519 730520 BF0128 BF0129 TRUE 0.878 3 0
 730521 730522 BF0130 BF0131 FALSE 0.062 270 0
 730522 730523 BF0131 BF0132 TRUE 0.721 -21 0
 730523 730524 BF0132 BF0133 TRUE 0.771 31 0
 730525 730526 BF0134 BF0135 TRUE 0.571 17 -4.741
 730526 730527 BF0135 BF0136 FALSE 0.053 302 0
 730527 730528 BF0136 BF0137 FALSE 0.079 239 0
 730528 730529 BF0137 BF0138 FALSE 0.059 280 0
 730529 730530 BF0138 BF0139 TRUE 0.996 -7 0
 730530 730531 BF0139 BF0140 TRUE 0.976 -30 0
 730531 730532 BF0140 BF0141 TRUE 0.787 0 0
 730532 730533 BF0141 BF0142 FALSE 0.018 610 0
 730533 730534 BF0142 BF0143 TRUE 0.883 -10 0.392
 730534 730535 BF0143 BF0144 TRUE 0.818 28 0
 730535 730536 BF0144 BF0145 TRUE 0.511 61 0
 730536 730537 BF0145 BF0146 TRUE 0.875 21 0
 730537 730538 BF0146 BF0147 TRUE 0.884 4 0
 730539 730540 BF0148 BF0149 TRUE 0.686 -36 0
 730540 730541 BF0149 BF0150 TRUE 0.757 32 0
 730542 730543 BF0151 BF0152 TRUE 0.898 12 0
 730544 730545 BF0153 BF0154 TRUE 0.793 36 0.009
 730545 730546 BF0154 BF0155 TRUE 0.917 18 0.009
 730548 730549 BF0157 BF0158 TRUE 0.683 -37 0
 730549 730550 BF0158 BF0159 FALSE 0.256 165 0.009
 730551 730552 BF0160 BF0161 FALSE 0.012 622 0.009
 730553 730554 BF0162 BF0163 FALSE 0.14 329 -0.789
 730554 730555 BF0163 BF0164 TRUE 0.93 -7 0.927
 730555 730556 BF0164 BF0165 TRUE 0.986 3 2.413
 730556 730557 BF0165 BF0166 TRUE 0.924 52 2.956
 730558 730559 BF0167 BF0168 TRUE 0.543 84 0.009
 730559 730560 BF0168 BF0169 FALSE 0.113 244 0.009
 730560 730561 BF0169 BF0170 TRUE 0.533 95 0.144
 730561 730562 BF0170 BF0171 FALSE 0.213 185 0.235
 730562 730563 BF0171 BF0172 TRUE 0.851 -12 0.336
 730563 730564 BF0172 BF0173 TRUE 0.939 0 0.401
 730568 730569 BF0177 BF0178 TRUE 0.934 97 77.834
 730569 730570 BF0178 BF0179 FALSE 0.152 129 -1.284
 730570 730571 BF0179 BF0180 TRUE 0.731 64 0.401
 730571 730572 BF0180 BF0181 TRUE 0.999 8 0.401
 730572 730573 BF0181 BF0182 TRUE 0.991 5 25.719
 730574 730575 BF0183 BF0184 FALSE 0.165 125 -1.116
 730576 730577 BF0185 BF0186 TRUE 0.956 7 0.401
 730579 730580 BF0188 BF0189 TRUE 0.989 20 0.401
 730580 730581 BF0189 BF0190 TRUE 0.987 17 33.946
 730581 730582 BF0190 BF0191 TRUE 0.992 25 62.333
 730582 730583 BF0191 BF0192 FALSE 0.017 309 0.267
 730584 730585 BF0193 BF0194 TRUE 0.767 -61 -1.516
 730586 730587 BF0195 BF0196 FALSE 0.062 111 -6.396
 730587 730588 BF0196 BF0197 FALSE 0.083 234 0
 730588 730589 BF0197 BF0198 FALSE 0.202 157 0
 730589 730590 BF0198 BF0199 TRUE 0.571 64 0.009
 730590 730591 BF0199 BF0200 TRUE 0.984 10 0.009
 730592 730593 BF0201 BF0202 TRUE 0.786 -7 0
 730593 730594 BF0202 BF0203 TRUE 0.831 -3 0
 730594 730595 BF0203 BF0204 TRUE 0.886 6 0
 730595 730596 BF0204 BF0205 TRUE 0.52 59 0
 730596 730597 BF0205 BF0206 TRUE 0.85 25 0
 730597 730598 BF0206 BF0207 FALSE 0.144 182 0
 730598 730599 BF0207 BF0208 FALSE 0.104 213 0
 730599 730600 BF0208 BF0209 FALSE 0.019 357 0.009
 730600 730601 BF0209 BF0210 TRUE 0.997 -3 8.785
 730601 730602 BF0210 BF0211 FALSE 0.226 160 -0.007
 730602 730603 BF0211 BF0212 TRUE 0.599 65 0.009
 730603 730604 BF0212 BF0213 FALSE 0.14 221 0.009
 730609 730610 BF0218 BF0219 TRUE 0.995 5 108.953
 730610 730611 BF0219 BF0220 TRUE 1 16 1427.327
 730614 730615 BF0223 BF0224 TRUE 0.924 5 0.009
 730616 730617 BF0225 BF0226 TRUE 0.854 28 -0.231
 730617 730618 BF0226 BF0227 TRUE 0.988 3 22.345
 730618 730619 BF0227 BF0228 FALSE 0.447 121 0.009
 730620 730621 BF0229 BF0230 TRUE 0.905 3 -0.071
 730625 730626 BF0234 BF0235 FALSE 0.314 128 0
 730626 730627 BF0235 BF0236 FALSE 0.298 147 0.009
 730627 730628 BF0236 BF0237 TRUE 0.915 8 0.009
 730628 730629 BF0237 BF0238 TRUE 0.994 9 43.2
 730629 730630 BF0238 BF0239 TRUE 0.594 58 -0.005
 730630 730631 BF0239 BF0240 TRUE 0.781 128 -3.725
 730631 730632 BF0240 BF0241 TRUE 0.549 62 -0.379
 730632 730633 BF0241 BF0242 TRUE 0.955 -16 2.358
 730633 730634 BF0242 BF0243 TRUE 0.924 5 0.009
 730635 730636 BF0244 BF0245 TRUE 0.977 20 1.845
 730639 730640 BF0248 BF0249 FALSE 0.27 161 0.009
 730640 730641 BF0249 BF0250 FALSE 0.023 303 0.009
 730641 730642 BF0250 BF0251 TRUE 0.828 -13 0.009
 730642 730643 BF0251 BF0252 FALSE 0.169 205 0.009
 730643 730644 BF0252 BF0253 TRUE 0.625 73 0.401
 730644 730645 BF0253 BF0254 TRUE 0.984 19 8.448
 730645 730646 BF0254 BF0255