VIMSS Operon Predictions for Alkalilimnicola ehrlichei MLHE-1

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 2155829 2155830 Mlg_0001 Mlg_0002 TRUE 0.94 221 863.463
 2155830 2155831 Mlg_0002 Mlg_0003 TRUE 0.991 65 734.847
 2155831 2155832 Mlg_0003 Mlg_0004 TRUE 0.992 72 384.786
 2155832 2155833 Mlg_0004 Mlg_0005 FALSE 0.422 28 -20.43
 2155833 2155834 Mlg_0005 Mlg_0006 TRUE 0.996 -7 55.495
 2155834 2155835 Mlg_0006 Mlg_0007 TRUE 0.936 55 60.816
 2155835 2155836 Mlg_0007 Mlg_0008 TRUE 0.749 6 -4.873
 2155837 2155838 Mlg_0009 Mlg_0010 TRUE 0.954 -3 120.992
 2155838 2155839 Mlg_0010 Mlg_0011 TRUE 0.994 -25 93.138
 2155839 2155840 Mlg_0011 Mlg_0012 TRUE 1 -7 799.918
 2155841 2155842 Mlg_0013 Mlg_0014 TRUE 0.54 110 39.826
 2155842 2155843 Mlg_0014 Mlg_0015 FALSE 0.422 149 72.505
 2155843 2155844 Mlg_0015 Mlg_0016 TRUE 0.994 -3 400.395
 2155845 2155846 Mlg_0017 Mlg_0018 TRUE 0.705 -3 0
 2155846 2155847 Mlg_0018 Mlg_0019 FALSE 0.112 110 -0.486
 2155847 2155848 Mlg_0019 Mlg_0020 TRUE 0.998 43 1177.403
 2155849 2155850 Mlg_0021 Mlg_0022 TRUE 0.977 10 156.319
 2155850 2155851 Mlg_0022 Mlg_0023 TRUE 0.889 -3 0.303
 2155851 2155852 Mlg_0023 Mlg_0024 FALSE 0.302 128 37.901
 2155852 2155853 Mlg_0024 Mlg_0025 TRUE 0.872 0 356.166
 2155853 2155854 Mlg_0025 Mlg_0026 TRUE 0.999 20 969.208
 2155854 2155855 Mlg_0026 Mlg_0027 FALSE 0.283 48 -9.906
 2155857 2155858 Mlg_0029 Mlg_0030 TRUE 0.72 4 66.471
 2155859 2155860 Mlg_0031 Mlg_0032 FALSE 0.243 105 0
 2155860 2155861 Mlg_0032 Mlg_0033 FALSE 0.497 34 -41.61
 2155861 2155862 Mlg_0033 Mlg_0034 FALSE 0.324 2 5.719
 2155862 2155863 Mlg_0034 Mlg_0035 TRUE 0.986 58 604.693
 2155863 1386878 Mlg_0035 Mlg_0036 FALSE 0.087 843 0
 1386878 2155864 Mlg_0036 Mlg_0037 FALSE 0.117 171 0
 2155864 2155865 Mlg_0037 Mlg_0038 FALSE 0.154 0 0
 2155865 2155866 Mlg_0038 Mlg_0039 FALSE 0.223 3 0
 2155866 2155867 Mlg_0039 Mlg_0040 FALSE 0.275 99 0
 2155867 2155868 Mlg_0040 Mlg_0041 TRUE 0.774 21 0
 2155868 2155869 Mlg_0041 Mlg_0042 TRUE 0.705 -3 0
 2155869 2155870 Mlg_0042 Mlg_0043 TRUE 0.705 -3 0
 2155870 1386886 Mlg_0043 Mlg_0044 TRUE 0.555 48 0
 2155871 2155872 Mlg_0045 Mlg_0046 TRUE 0.975 35 232.071
 2155872 2155873 Mlg_0046 Mlg_0047 TRUE 0.956 7 83.315
 2155873 2155874 Mlg_0047 Mlg_0048 TRUE 0.966 20 83.733
 2155874 2155875 Mlg_0048 Mlg_0049 TRUE 0.98 -3 197.431
 2155875 2155876 Mlg_0049 Mlg_0050 TRUE 0.639 5 0
 2155876 2155877 Mlg_0050 Mlg_0051 TRUE 0.705 -3 0
 2155877 2155878 Mlg_0051 Mlg_0052 FALSE 0.471 0 38.985
 2155878 2155879 Mlg_0052 Mlg_0053 TRUE 0.633 3 42.372
 2155879 2155880 Mlg_0053 Mlg_0054 TRUE 0.5 -3 -4.889
 2155880 2155881 Mlg_0054 Mlg_0055 TRUE 0.889 -3 19.915
 2155881 2155882 Mlg_0055 Mlg_0056 TRUE 0.992 -12 46.803
 2155882 2155883 Mlg_0056 Mlg_0057 TRUE 0.89 36 35.86
 2155883 2155884 Mlg_0057 Mlg_0058 FALSE 0.107 243 -13.719
 2155884 2155885 Mlg_0058 Mlg_0059 FALSE 0.176 87 -6.064
 2155885 2155886 Mlg_0059 Mlg_0060 FALSE 0.137 143 0
 2155886 2155887 Mlg_0060 Mlg_0061 FALSE 0.351 85 0
 2155887 2155888 Mlg_0061 Mlg_0062 TRUE 0.942 58 227.555
 2155888 2155889 Mlg_0062 Mlg_0063 TRUE 0.98 7 250.57
 2155889 2155890 Mlg_0063 Mlg_0064 FALSE 0.233 61 -18.087
 2155890 2155891 Mlg_0064 Mlg_0065 TRUE 0.87 47 34.181
 2155891 2155892 Mlg_0065 Mlg_0066 FALSE 0.039 182 -28.513
 2155892 2155893 Mlg_0066 Mlg_0067 TRUE 0.999 15 871.026
 2155893 2155894 Mlg_0067 Mlg_0068 TRUE 0.815 72 38.349
 2155894 2155895 Mlg_0068 Mlg_0069 TRUE 0.738 4 85.807
 2155895 2155896 Mlg_0069 Mlg_0070 TRUE 0.68 2 148.856
 2155896 2155897 Mlg_0070 Mlg_0071 TRUE 0.973 -3 175.524
 2155899 2155900 Mlg_0073 Mlg_0074 FALSE 0.227 75 -1.015
 2155900 2155901 Mlg_0074 Mlg_0075 FALSE 0.46 32 -0.379
 2155902 2155903 Mlg_0076 Mlg_0077 TRUE 0.948 -3 54.582
 2155905 2155906 Mlg_0079 Mlg_0080 TRUE 0.964 63 268.258
 2155907 2155908 Mlg_0081 Mlg_0082 TRUE 0.644 64 7.555
 2155909 2155910 Mlg_0083 Mlg_0084 FALSE 0.043 169 -2.967
 2155910 2155911 Mlg_0084 Mlg_0085 FALSE 0.031 286 -12.675
 2155911 2155912 Mlg_0085 Mlg_0086 TRUE 0.63 17 -8.302
 2155913 2155914 Mlg_0087 Mlg_0088 FALSE 0.341 38 -1.888
 2155914 2155915 Mlg_0088 Mlg_0089 TRUE 0.822 36 4.747
 2155915 1386932 Mlg_0089 Mlg_R0001 FALSE 0.414 76 0
 1386932 2155916 Mlg_R0001 Mlg_0090 FALSE 0.087 986 0
 2155917 2155918 Mlg_0091 Mlg_0092 TRUE 0.641 33 0
 2155923 2155924 Mlg_0097 Mlg_0098 FALSE 0.053 177 -0.77
 2155925 2155926 Mlg_0099 Mlg_0100 TRUE 0.598 38 0
 2155926 2155927 Mlg_0100 Mlg_0101 TRUE 0.709 54 0.328
 2155927 2155928 Mlg_0101 Mlg_0102 TRUE 0.914 -3 21.682
 2155928 2155929 Mlg_0102 Mlg_0103 FALSE 0.46 4 0
 2155929 2155930 Mlg_0103 Mlg_0104 FALSE 0.359 85 0
 2155930 2155931 Mlg_0104 Mlg_0105 FALSE 0.09 331 0
 2155934 2155935 Mlg_0108 Mlg_0109 FALSE 0.104 137 -0.295
 2155935 2155936 Mlg_0109 Mlg_0110 TRUE 0.655 13 -6.136
 2155938 2155939 Mlg_0112 Mlg_0113 FALSE 0.227 108 0
 2155940 2155941 Mlg_0114 Mlg_0115 FALSE 0.144 139 0
 2155941 2155942 Mlg_0115 Mlg_0116 FALSE 0.095 287 0
 2155942 1386960 Mlg_0116 Mlg_0117 FALSE 0.48 65 0
 2155943 2155944 Mlg_0119 Mlg_0120 FALSE 0.475 6 -1.141
 2155944 2155945 Mlg_0120 Mlg_0121 FALSE 0.026 1 -0.845
 2155945 2155946 Mlg_0121 Mlg_0122 FALSE 0.264 0 0.561
 2155946 2155947 Mlg_0122 Mlg_0123 TRUE 0.739 25 0
 2155947 2155948 Mlg_0123 Mlg_0124 TRUE 0.509 57 0
 2155948 2155949 Mlg_0124 Mlg_0125 FALSE 0.087 1083 0
 2155949 2155950 Mlg_0125 Mlg_0126 TRUE 0.946 -3 50.073
 2155950 2155951 Mlg_0126 Mlg_0127 FALSE 0.038 218 -1.522
 2155951 2155952 Mlg_0127 Mlg_0128 FALSE 0.167 131 -0.098
 2155952 2155953 Mlg_0128 Mlg_0129 FALSE 0.044 217 -0.845
 2155954 2155955 Mlg_0130 Mlg_0131 TRUE 0.522 -3 -0.53
 2155955 2155956 Mlg_0131 Mlg_0132 FALSE 0.123 158 0
 2155956 2155957 Mlg_0132 Mlg_0133 TRUE 0.863 14 0
 2155959 2155960 Mlg_0135 Mlg_0136 TRUE 0.895 -3 6.768
 2155960 2155961 Mlg_0136 Mlg_0137 TRUE 0.997 -10 8.334
 2155961 2155962 Mlg_0137 Mlg_0138 TRUE 0.833 7 3.555
 2155962 2155963 Mlg_0138 Mlg_0139 TRUE 0.778 4 8.854
 2155963 2155964 Mlg_0139 Mlg_0140 TRUE 0.88 -3 9.22
 2155964 2155965 Mlg_0140 Mlg_0141 TRUE 0.981 -10 14.165
 2155965 2155966 Mlg_0141 Mlg_0142 TRUE 0.931 5 38.993
 2155966 2155967 Mlg_0142 Mlg_0143 TRUE 0.984 15 62.184
 2155967 2155968 Mlg_0143 Mlg_0144 TRUE 0.992 -10 15.866
 2155968 2155969 Mlg_0144 Mlg_0145 TRUE 0.715 4 10.199
 2155969 2155970 Mlg_0145 Mlg_0146 TRUE 0.989 -10 10.826
 2155970 2155971 Mlg_0146 Mlg_0147 TRUE 0.985 15 67.718
 2155972 2155973 Mlg_0148 Mlg_0149 FALSE 0.113 180 0
 2155973 2155974 Mlg_0149 Mlg_0150 TRUE 0.766 45 0
 2155974 2155975 Mlg_0150 Mlg_0151 FALSE 0.155 687 0.208
 2155975 2155976 Mlg_0151 Mlg_0152 FALSE 0.478 -3 -1.199
 2155976 2155977 Mlg_0152 Mlg_0153 TRUE 0.842 29 5.327
 2155977 2155978 Mlg_0153 Mlg_0154 FALSE 0.282 0 2.731
 2155978 2155979 Mlg_0154 Mlg_0155 FALSE 0.038 371 -0.845
 2155980 2155981 Mlg_0156 Mlg_0157 TRUE 0.935 9 8.684
 2155981 2155982 Mlg_0157 Mlg_0158 TRUE 0.981 25 61.258
 2155982 2155983 Mlg_0158 Mlg_0159 TRUE 0.953 20 31.342
 2155983 2155984 Mlg_0159 Mlg_0160 TRUE 0.938 33 4.196
 2155985 2155986 Mlg_0161 Mlg_0162 TRUE 0.531 53 0
 2155986 2155987 Mlg_0162 Mlg_0163 FALSE 0.499 22 -15.279
 2155988 2155989 Mlg_0164 Mlg_0165 FALSE 0.04 437 -0.491
 2155989 2155990 Mlg_0165 Mlg_0166 FALSE 0.437 27 -29.372
 2155990 2155991 Mlg_0166 Mlg_0167 TRUE 0.996 67 789.974
 2155991 2155992 Mlg_0167 Mlg_0168 TRUE 0.998 46 954.081
 2155993 2155994 Mlg_0169 Mlg_0170 TRUE 0.897 145 514.341
 2155994 2155995 Mlg_0170 Mlg_0171 TRUE 0.995 -3 258.923
 2155995 2155996 Mlg_0171 Mlg_0172 TRUE 0.969 9 75.279
 2155996 2155997 Mlg_0172 Mlg_0173 TRUE 0.999 -13 523.296
 2155997 2155998 Mlg_0173 Mlg_0174 TRUE 0.931 25 24.777
 2155998 2155999 Mlg_0174 Mlg_0175 TRUE 0.946 -3 23.205
 2155999 2156000 Mlg_0175 Mlg_0176 TRUE 0.939 72 96.291
 2156000 2156001 Mlg_0176 Mlg_0177 TRUE 0.952 12 63.949
 2156001 2156002 Mlg_0177 Mlg_0178 FALSE 0.422 2 71.654
 2156002 2156003 Mlg_0178 Mlg_0179 TRUE 0.581 444 153.962
 2156003 2156004 Mlg_0179 Mlg_0180 FALSE 0.039 184 -11.749
 2156004 2156005 Mlg_0180 Mlg_0181 TRUE 0.966 11 9.739
 2156005 2156006 Mlg_0181 Mlg_0182 TRUE 0.996 11 264.036
 2156006 2156007 Mlg_0182 Mlg_0183 TRUE 0.999 12 441.121
 2156007 2156008 Mlg_0183 Mlg_0184 TRUE 0.997 -3 427.242
 2156008 2156009 Mlg_0184 Mlg_0185 TRUE 0.811 691 201.444
 2156009 2156010 Mlg_0185 Mlg_0186 TRUE 1 -10 358.855
 2156010 2156011 Mlg_0186 Mlg_0187 TRUE 0.945 332 468.802
 2156011 2156012 Mlg_0187 Mlg_0188 FALSE 0.293 194 47.817
 2156012 2156013 Mlg_0188 Mlg_0189 TRUE 0.846 123 180.875
 2156013 2156014 Mlg_0189 Mlg_0190 TRUE 0.995 11 191.774
 2156014 2156015 Mlg_0190 Mlg_0191 TRUE 0.99 -3 406.386
 2156015 2156016 Mlg_0191 Mlg_0192 TRUE 0.902 2 409.676
 2156016 2156017 Mlg_0192 Mlg_0193 FALSE 0.04 165 -18.662
 2156018 2156019 Mlg_0194 Mlg_0195 FALSE 0.085 480 0
 2156019 2156020 Mlg_0195 Mlg_0196 TRUE 0.942 20 25.966
 2156020 2156021 Mlg_0196 Mlg_0197 TRUE 0.593 40 -0.207
 2156021 2156022 Mlg_0197 Mlg_0198 TRUE 0.985 -3 272.784
 2156023 2156024 Mlg_0199 Mlg_0200 TRUE 0.988 21 274.101
 2156024 2156025 Mlg_0200 Mlg_0201 TRUE 0.985 -3 296.713
 2156026 2156027 Mlg_0202 Mlg_0203 TRUE 0.602 17 -10.551
 2156027 2156028 Mlg_0203 Mlg_0204 FALSE 0.311 64 -2.442
 2156028 2156029 Mlg_0204 Mlg_0205 FALSE 0.077 3 -11.04
 2156029 2156030 Mlg_0205 Mlg_0206 FALSE 0.348 63 -1.736
 2156030 2156031 Mlg_0206 Mlg_0207 FALSE 0.124 125 -0.127
 2156031 2156032 Mlg_0207 Mlg_0208 FALSE 0.088 159 -0.127
 2156032 2156033 Mlg_0208 Mlg_0209 FALSE 0.057 128 -12.334
 2156033 2156034 Mlg_0209 Mlg_0210 TRUE 0.749 24 0
 2156036 2156037 Mlg_0212 Mlg_0213 FALSE 0.058 578 -0.295
 2156037 2156038 Mlg_0213 Mlg_0214 FALSE 0.155 342 0.178
 2156038 2156039 Mlg_0214 Mlg_0215 TRUE 0.984 15 19.161
 2156039 2156040 Mlg_0215 Mlg_0216 TRUE 0.968 26 21.54
 2156040 2156041 Mlg_0216 Mlg_0217 TRUE 0.935 -3 2.855
 2156042 2156043 Mlg_0218 Mlg_0219 TRUE 0.911 -3 12.908
 2156043 2156044 Mlg_0219 Mlg_0220 TRUE 0.922 -3 7.161
 2156044 2156045 Mlg_0220 Mlg_0221 FALSE 0.118 123 -0.591
 2156045 2156046 Mlg_0221 Mlg_0222 TRUE 0.585 -3 -2.869
 2156046 2156047 Mlg_0222 Mlg_0223 TRUE 0.921 48 134.474
 2156049 2156050 Mlg_0225 Mlg_0226 FALSE 0.168 87 -3.088
 2156053 2156054 Mlg_0229 Mlg_0230 FALSE 0.1 226 0
 2156055 2156056 Mlg_0231 Mlg_0232 TRUE 0.511 -3 -0.604
 2156056 2156057 Mlg_0232 Mlg_0233 FALSE 0.065 137 -0.845
 2156058 2156059 Mlg_0234 Mlg_0235 TRUE 0.566 44 0
 2156059 2156060 Mlg_0235 Mlg_0236 FALSE 0.421 36 -0.352
 2156060 2156061 Mlg_0236 Mlg_0237 FALSE 0.131 149 0
 2156061 2156062 Mlg_0237 Mlg_0238 FALSE 0.267