VIMSS Operon Predictions for Bacillus anthracis str. A2012

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 626507 626508 BA_0001 BA_0002 FALSE 0.217 96 -2.831
 626509 626510 BA_0003 BA_0004 FALSE 0.022 108 2.632
 626512 626513 BA_0006 BA_0007 FALSE 0.113 253 0.49
 626513 626514 BA_0007 BA_0008 TRUE 0.985 -3 69.069
 626515 626516 BA_0009 BA_0010 FALSE 0.409 110 -5.523
 626519 626520 BA_0013 BA_0014 TRUE 0.534 69 1.501
 626525 626526 BA_0019 BA_0020 FALSE 0.028 348 -1.315
 626528 626529 BA_0022 BA_0023 TRUE 0.925 51 -1.217
 626529 626530 BA_0023 BA_0024 FALSE 0.333 148 0.053
 626531 626532 BA_0025 BA_0026 TRUE 0.89 109 -27.468
 626534 626535 BA_0028 BA_0029 FALSE 0.088 147 1.014
 626535 626536 BA_0029 BA_0030 TRUE 0.532 87 6.48
 626536 626537 BA_0030 BA_0031 FALSE 0.085 -3 1.418
 626537 626538 BA_0031 BA_0032 FALSE 0.037 124 1.427
 626540 626541 BA_0034 BA_0035 TRUE 0.633 24 0
 626542 626543 BA_0036 BA_0037 FALSE 0.099 176 -2.611
 626548 626549 BA_0042 BA_0043 TRUE 0.54 42 -34.397
 626549 626550 BA_0043 BA_0044 FALSE 0.053 244 -4.987
 626551 626552 BA_0045 BA_0046 FALSE 0.125 231 0
 626552 626553 BA_0046 BA_0047 FALSE 0.363 55 0
 626553 626554 BA_0047 BA_0048 TRUE 0.959 -16 36.816
 626555 626556 BA_0049 BA_0050 FALSE 0.006 236 0.303
 626556 626557 BA_0050 BA_0051 FALSE 0.003 302 0.117
 626558 626559 BA_0052 BA_0053 TRUE 0.742 25 0.1
 626560 626561 BA_0054 BA_0055 FALSE 0.434 114 0.066
 626561 626562 BA_0055 BA_0056 FALSE 0.471 99 0.172
 626562 626563 BA_0056 BA_0057 FALSE 0.326 -31 -0.27
 626564 626565 BA_0058 BA_0059 FALSE 0.001 384 0.318
 626570 626571 BA_0064 BA_0065 FALSE 0.15 304 0
 626571 626572 BA_0065 BA_0066 TRUE 0.529 72 1.451
 626573 626574 BA_0067 BA_0068 TRUE 0.879 102 0
 626574 626575 BA_0068 BA_0069 TRUE 0.712 18 0
 626575 626576 BA_0069 BA_0070 FALSE 0.009 373 -7.068
 626582 626583 BA_0076 BA_0077 TRUE 0.504 75 0.318
 626586 626587 BA_0080 BA_0081 FALSE 0.266 55 -0.992
 626587 626588 BA_0081 BA_0082 TRUE 0.571 66 5.969
 626589 626590 BA_0083 BA_0084 TRUE 0.969 0 3.411
 626591 626592 BA_0085 BA_0086 FALSE 0.231 145 0
 626592 626593 BA_0086 BA_0087 TRUE 0.948 49 146.116
 626593 626594 BA_0087 BA_0088 TRUE 0.97 -10 361.286
 626594 626595 BA_0088 BA_0089 TRUE 0.989 0 212.164
 626595 626596 BA_0089 BA_0090 TRUE 0.996 16 232.279
 626596 626597 BA_0090 BA_0091 FALSE 0.133 239 -4.43
 626597 626598 BA_0091 BA_0092 TRUE 0.834 73 0.148
 626598 626599 BA_0092 BA_0093 TRUE 0.992 24 71.396
 626599 626600 BA_0093 BA_0094 TRUE 0.993 -7 144.333
 626600 626601 BA_0094 BA_0095 FALSE 0.001 532 0.73
 626601 626602 BA_0095 BA_0096 FALSE 0.385 155 0.73
 626602 626603 BA_0096 BA_0097 TRUE 0.897 13 11.99
 626603 626604 BA_0097 BA_0098 FALSE 0.022 497 -2.26
 626604 626605 BA_0098 BA_0099 TRUE 0.965 42 9.919
 626605 626606 BA_0099 BA_0100 FALSE 0 744 0.004
 626606 626607 BA_0100 BA_0101 TRUE 0.57 42 0.004
 626607 626608 BA_0101 BA_0102 FALSE 0.001 527 0.013
 626608 626609 BA_0102 BA_0103 TRUE 0.5 53 0.013
 626611 626612 BA_0105 BA_0106 TRUE 0.747 38 -0.154
 626612 626613 BA_0106 BA_0107 FALSE 0.205 246 0.297
 626613 626614 BA_0107 BA_0108 TRUE 0.982 14 12.283
 626614 626615 BA_0108 BA_0109 FALSE 0.442 147 -0.325
 626615 626616 BA_0109 BA_0110 FALSE 0.003 588 -16.474
 626616 626617 BA_0110 BA_0111 TRUE 0.873 4 1.725
 626617 626618 BA_0111 BA_0112 FALSE 0.143 139 -9.098
 626618 626619 BA_0112 BA_0113 TRUE 0.878 275 73.894
 626619 626620 BA_0113 BA_0114 TRUE 0.994 22 333.597
 626622 626623 BA_0116 BA_0117 FALSE 0.015 310 -3.029
 626623 626624 BA_0117 BA_0118 FALSE 0.293 49 -2.096
 626624 626625 BA_0118 BA_0119 FALSE 0.224 78 -2.069
 626627 626628 BA_0121 BA_0122 FALSE 0.131 271 0.022
 626628 626629 BA_0122 BA_0123 FALSE 0.48 83 0.279
 626629 626630 BA_0123 BA_0124 FALSE 0.46 120 -10.189
 626630 626631 BA_0124 BA_0125 FALSE 0.004 666 0.172
 626631 626632 BA_0125 BA_0126 TRUE 0.546 130 0.284
 626632 626633 BA_0126 BA_0127 TRUE 0.739 29 0.41
 626634 626635 BA_0128 BA_0129 FALSE 0.016 332 -21.02
 626636 626637 BA_0130 BA_0131 TRUE 0.869 13 0.318
 626637 626638 BA_0131 BA_0132 TRUE 0.695 -13 0.318
 626641 626642 BA_0135 BA_0136 TRUE 0.723 31 0.41
 626642 626643 BA_0136 BA_0137 FALSE 0.002 365 0.41
 626643 626644 BA_0137 BA_0138 TRUE 0.984 -22 4.145
 626644 626645 BA_0138 BA_0139 FALSE 0.409 140 0.318
 626647 626648 BA_0141 BA_0142 FALSE 0.006 414 -3.23
 626648 626649 BA_0142 BA_0143 FALSE 0.355 118 -25.699
 626650 626651 BA_0144 BA_0145 FALSE 0.013 156 0.297
 626651 626652 BA_0145 BA_0146 TRUE 0.509 99 0.363
 626652 626653 BA_0146 BA_0147 FALSE 0.498 113 0.401
 626653 626654 BA_0147 BA_0148 FALSE 0.012 164 0.197
 626654 626655 BA_0148 BA_0149 TRUE 0.989 -12 26.38
 626656 626657 BA_0150 BA_0151 FALSE 0.259 213 -10.902
 626657 626658 BA_0151 BA_0152 FALSE 0.002 319 0.086
 626660 626661 BA_0154 BA_0155 FALSE 0.274 54 -0.657
 626661 626662 BA_0155 BA_0156 FALSE 0.224 148 0
 626662 626663 BA_0156 BA_0157 FALSE 0.324 102 0
 626664 626665 BA_0158 BA_0159 TRUE 0.593 295 0
 626665 626666 BA_0159 BA_0160 FALSE 0.1 314 0
 626666 626667 BA_0160 BA_0161 FALSE 0.026 379 0
 626667 626668 BA_0161 BA_0162 FALSE 0.198 167 0
 626670 626671 BA_0164 BA_0165 TRUE 0.506 51 0.004
 626671 626672 BA_0165 BA_0166 TRUE 0.791 19 0.004
 626672 626673 BA_0166 BA_0167 FALSE 0.003 312 0.004
 626673 626674 BA_0167 BA_0168 FALSE 0.315 110 0
 626674 626675 BA_0168 BA_0169 FALSE 0.345 161 0
 626676 626677 BA_0170 BA_0171 FALSE 0.004 436 -2.2
 626677 626678 BA_0171 BA_0172 TRUE 0.644 45 2.195
 626679 626680 BA_0173 BA_0174 FALSE 0.054 365 -10.168
 626680 626681 BA_0174 BA_0175 FALSE 0.007 389 -4.176
 626681 626682 BA_0175 BA_0176 FALSE 0.349 167 0.318
 626682 626683 BA_0176 BA_0177 TRUE 0.6 26 0
 626683 626684 BA_0177 BA_0178 FALSE 0.436 -28 0
 626685 626686 BA_0179 BA_0180 TRUE 0.993 -3 74.272
 626687 626688 BA_0181 BA_0182 FALSE 0.455 79 0.103
 626688 626689 BA_0182 BA_0183 FALSE 0.123 161 -6.423
 626689 626690 BA_0183 BA_0184 FALSE 0.299 144 -10.554
 626690 626691 BA_0184 BA_0185 FALSE 0.268 50 -5.309
 626693 626694 BA_0187 BA_0188 TRUE 0.995 -3 282.509
 626696 626697 BA_0190 BA_0191 TRUE 0.687 20 0
 626697 626698 BA_0191 BA_0192 FALSE 0.019 415 0.205
 626698 807227 BA_0192 ssrA FALSE 0.021 408 0
 807227 626699 BA_0193 ssrA FALSE 0.269 127 0
 626699 626700 BA_0193 BA_0194 TRUE 0.897 249 136.739
 626700 626701 BA_0194 BA_0195 TRUE 0.905 142 35.024
 626701 626702 BA_0195 BA_0196 TRUE 0.885 162 35.109
 626702 626703 BA_0196 BA_0197 FALSE 0.323 95 -13.13
 626703 626704 BA_0197 BA_0198 TRUE 0.975 -3 9.671
 626706 626707 BA_0200 BA_0201 FALSE 0.3 158 0.004
 626707 626708 BA_0201 BA_0202 FALSE 0.016 417 0.004
 626708 626709 BA_0202 BA_0203 FALSE 0.194 175 0
 626709 626710 BA_0203 BA_0204 FALSE 0.096 257 0
 626712 626713 BA_0206 BA_0207 TRUE 0.745 -3 0.002
 626713 626714 BA_0207 BA_0208 TRUE 0.826 6 0.004
 626714 626715 BA_0208 BA_0209 TRUE 0.758 -3 0.004
 626716 626717 BA_0210 BA_0211 TRUE 0.791 19 0.004
 626719 626720 BA_0213 BA_0214 FALSE 0.189 184 0
 626720 626721 BA_0214 BA_0215 TRUE 0.689 -7 0.004
 626721 626722 BA_0215 BA_0216 FALSE 0.472 55 0.003
 626722 626723 BA_0216 BA_0217 FALSE 0.003 417 0.003
 626723 626724 BA_0217 BA_0218 FALSE 0.335 -28 -0.177
 626724 626725 BA_0218 BA_0219 FALSE 0.46 60 0.004
 626725 626726 BA_0219 BA_0220 FALSE 0.419 87 0.004
 626727 626728 BA_0221 BA_0222 FALSE 0.385 123 0.004
 626728 626729 BA_0222 BA_0223 TRUE 0.604 245 5.907
 626729 626730 BA_0223 BA_0224 TRUE 0.991 31 20.823
 626730 626731 BA_0224 BA_0225 TRUE 0.995 -3 47.626
 626731 626732 BA_0225 BA_0226 TRUE 0.99 33 233.891
 626732 626733 BA_0226 BA_0227 TRUE 0.989 140 415.768
 626733 626734 BA_0227 BA_0228 TRUE 0.982 27 52.444
 626734 626735 BA_0228 BA_0229 FALSE 0.248 137 0
 626735 626736 BA_0229 BA_0230 FALSE 0.307 86 0
 626737 626738 BA_0231 BA_0232 FALSE 0.122 234 0
 626738 626739 BA_0232 BA_0233 TRUE 0.534 31 0
 626739 626740 BA_0233 BA_0234 TRUE 0.981 1 8.112
 626740 626741 BA_0234 BA_0235 TRUE 0.974 -3 8.112
 626741 626742 BA_0235 BA_0236 TRUE 0.983 12 2.585
 626742 626743 BA_0236 BA_0237 TRUE 0.94 21 1.701
 626743 626744 BA_0237 BA_0238 FALSE 0.07 242 -7.842
 626745 626746 BA_0239 BA_0240 TRUE 0.973 24 12.145
 626746 626747 BA_0240 BA_0241 TRUE 0.914 90 223.334
 626747 626748 BA_0241 BA_0242 TRUE 0.985 4 220.261
 626748 626749 BA_0242 BA_0243 TRUE 0.838 21 1.565
 626749 626750 BA_0243 BA_0244 FALSE 0.077 229 -5.183
 626750 626751 BA_0244 BA_0245 FALSE 0.112 163 -21.852
 626751 626752 BA_0245 BA_0246 TRUE 0.638 85 2.62
 626752 626753 BA_0246 BA_0247 FALSE 0.324 106 0
 626753 626754 BA_0247 BA_0248 TRUE 0.8 24 0.771
 626754 626755 BA_0248 BA_0249 FALSE 0.404 68 -9.893
 626755 626756 BA_0249 BA_0250 TRUE 0.984 25 136.871
 626756 626757 BA_0250 BA_0251 TRUE 0.857 157 26.631
 626757 626758 BA_0251 BA_0252 FALSE 0.212 115 -1.632
 626758 626759 BA_0252 BA_0253 FALSE 0.222 60 -6.615
 626759 626760 BA_0253 BA_0254 TRUE 1 6 50.716
 626760 626761 BA_0254 BA_0255 TRUE 0.629 161 -12.877
 626761 626762 BA_0255 BA_0256 FALSE 0.001 418 0.004
 626762 626763 BA_0256 BA_0257 FALSE 0.485 70 0.212
 626763 626764 BA_0257 BA_0258 TRUE 0.551 -3 -0.891
 626764 626765 BA_0258 BA_0259 FALSE 0.002 344 0.142
 626765 626766 BA_0259 BA_0260 FALSE 0.007 230 0.142
 626766 626767 BA_0260 BA_0261 FALSE 0.047 335 -1.576
 626768 626769 BA_0262 BA_0263 FALSE 0.31 112 0
 626769 626770 BA_0263 BA_0264 FALSE 0.38 52 0
 626770 626771 BA_0264 BA_0265 TRUE 0.925 5 0.04
 626771 626772 BA_0265 BA_0266 FALSE 0.132 266 -2.241
 626773 626774 BA_0267 BA_0268 FALSE 0.438 65 0.003
 626774 626775 BA_0268 BA_0269 FALSE 0.332 65 0
 626775 626776 BA_0269 BA_0270 FALSE 0.326 68 0
 626776 626777 BA_0270 BA_0271 TRUE 0.94 92 12.427
 626777 626778 BA_0271 BA_0272 TRUE 0.855 119 -0.473
 626778 626779 BA_0272 BA_0273 TRUE 0.989 -10 703.992
 626779 626780 BA_0273 BA_0274 FALSE 0.04 287 4.622
 626780 626781 BA_0274 BA_0275 F