VIMSS Operon Predictions for Acidobacteria bacterium Ellin345

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 2187753 2187754 Acid345_0001 Acid345_0002 TRUE 0.983 393 1235.206
 2187754 2187755 Acid345_0002 Acid345_0003 FALSE 0.248 70 -2.641
 2187755 2187756 Acid345_0003 Acid345_0004 TRUE 0.927 -3 0
 2187756 2187757 Acid345_0004 Acid345_0005 TRUE 0.777 7 -0.034
 2187757 2187758 Acid345_0005 Acid345_0006 FALSE 0.452 108 -0.867
 2187760 2187761 Acid345_0008 Acid345_0009 FALSE 0.099 202 -0.037
 2187761 2187762 Acid345_0009 Acid345_0010 FALSE 0.068 323 0
 2187762 2187763 Acid345_0010 Acid345_0011 FALSE 0.082 201 -0.021
 2187763 2187764 Acid345_0011 Acid345_0012 FALSE 0.193 80 0
 2187764 2187765 Acid345_0012 Acid345_0013 FALSE 0.148 104 0
 2187766 2187767 Acid345_0014 Acid345_0015 FALSE 0.125 138 0
 2187770 2187771 Acid345_0018 Acid345_0019 TRUE 0.999 12 1837.669
 2187771 2187772 Acid345_0019 Acid345_0020 TRUE 0.984 102 1027.915
 2187772 2187773 Acid345_0020 Acid345_0021 TRUE 0.999 -3 51.22
 2187773 2187774 Acid345_0021 Acid345_0022 TRUE 0.967 37 149.727
 2187774 2187775 Acid345_0022 Acid345_0023 TRUE 0.613 12 0
 2187775 2187776 Acid345_0023 Acid345_0024 FALSE 0.232 46 0
 2187776 2187777 Acid345_0024 Acid345_0025 TRUE 0.906 0 -0.36
 2187778 2187779 Acid345_0026 Acid345_0027 TRUE 0.771 94 3.391
 2187784 2187785 Acid345_0032 Acid345_0033 FALSE 0.207 72 0
 2187790 2187791 Acid345_0038 Acid345_0039 TRUE 0.903 0 0
 2187791 2187792 Acid345_0039 Acid345_0040 FALSE 0.207 84 -2.313
 2187792 2187793 Acid345_0040 Acid345_0041 TRUE 0.998 12 1481.264
 2187793 2187794 Acid345_0041 Acid345_0042 TRUE 0.936 277 224.882
 2187795 2187796 Acid345_0043 Acid345_0044 FALSE 0.139 115 0
 2187797 2187798 Acid345_0045 Acid345_0046 TRUE 0.844 5 -0.593
 2187798 2187799 Acid345_0046 Acid345_0047 FALSE 0.058 657 -0.511
 2187799 2187800 Acid345_0047 Acid345_0048 FALSE 0.065 342 0
 2187800 2187801 Acid345_0048 Acid345_0049 TRUE 0.896 -58 0
 2187801 2187802 Acid345_0049 Acid345_0050 TRUE 0.922 -3 0
 2187804 2187805 Acid345_0052 Acid345_0053 TRUE 0.903 0 0
 2187805 2187806 Acid345_0053 Acid345_0054 TRUE 0.922 -3 0
 2187806 2187807 Acid345_0054 Acid345_0055 FALSE 0.372 21 0
 2187807 2187808 Acid345_0055 Acid345_0056 TRUE 0.655 11 -0.366
 2187808 2187809 Acid345_0056 Acid345_0057 FALSE 0.236 40 -0.085
 2187809 2187810 Acid345_0057 Acid345_0058 FALSE 0.049 578 0
 2187810 2187811 Acid345_0058 Acid345_0059 FALSE 0.423 18 0
 2187811 2187812 Acid345_0059 Acid345_0060 TRUE 0.677 10 0
 2187813 2187814 Acid345_0061 Acid345_0062 FALSE 0.233 42 0
 2187814 2187815 Acid345_0062 Acid345_0063 TRUE 0.933 -3 0
 2187815 2187816 Acid345_0063 Acid345_0064 FALSE 0.1 197 -0.029
 2187816 2187817 Acid345_0064 Acid345_0065 FALSE 0.059 691 -1.051
 2187818 2187819 Acid345_0066 Acid345_0067 TRUE 0.95 -19 0
 2187822 2187823 Acid345_0070 Acid345_0071 FALSE 0.207 76 -0.066
 2187824 2187825 Acid345_0072 Acid345_0073 FALSE 0.103 187 0
 2187825 2187826 Acid345_0073 Acid345_0074 TRUE 0.504 225 2.5
 2187826 2187827 Acid345_0074 Acid345_0075 FALSE 0.163 98 -0.381
 2187828 2187829 Acid345_0076 Acid345_0077 FALSE 0.09 222 0
 2187831 2187832 Acid345_0079 Acid345_0080 FALSE 0.215 67 0
 2187832 2187833 Acid345_0080 Acid345_0081 FALSE 0.198 68 -0.085
 2187834 2187835 Acid345_0082 Acid345_0083 FALSE 0.087 333 -1.587
 2187839 2187840 Acid345_0087 Acid345_0088 FALSE 0.102 190 0
 2187840 2187841 Acid345_0088 Acid345_0089 FALSE 0.048 600 0
 2187841 2187842 Acid345_0089 Acid345_0090 TRUE 0.812 5 0
 2187842 2187843 Acid345_0090 Acid345_0091 TRUE 0.888 3 -2.854
 2187843 2187844 Acid345_0091 Acid345_0092 FALSE 0.037 1248 -0.081
 2187844 2187845 Acid345_0092 Acid345_0093 FALSE 0.188 70 -0.064
 2187847 2187848 Acid345_0095 Acid345_0096 FALSE 0.076 271 0
 2187851 2187852 Acid345_0099 Acid345_0100 FALSE 0.161 96 0
 2187852 2187853 Acid345_0100 Acid345_0101 FALSE 0.096 205 0
 2187853 2187854 Acid345_0101 Acid345_0102 FALSE 0.227 56 0
 2187855 2187856 Acid345_0103 Acid345_0104 FALSE 0.137 118 0
 2187857 2187858 Acid345_0105 Acid345_0106 FALSE 0.137 118 0
 2187858 2187859 Acid345_0106 Acid345_0107 TRUE 0.922 -3 0
 2187859 2187860 Acid345_0107 Acid345_0108 TRUE 0.994 0 10.028
 2187860 2187861 Acid345_0108 Acid345_0109 TRUE 0.914 -7 0
 2187861 2187862 Acid345_0109 Acid345_0110 TRUE 0.887 1 0
 2187862 2187863 Acid345_0110 Acid345_0111 TRUE 0.997 1 24.122
 2187863 2187864 Acid345_0111 Acid345_0112 TRUE 0.922 48 60.282
 2187864 2187865 Acid345_0112 Acid345_0113 FALSE 0.114 162 0
 2187865 2187866 Acid345_0113 Acid345_0114 TRUE 0.838 4 0
 2187866 2187867 Acid345_0114 Acid345_0115 TRUE 0.94 256 139.296
 2187871 2187872 Acid345_0119 Acid345_0120 TRUE 0.741 62 1.841
 2187872 2187873 Acid345_0120 Acid345_0121 TRUE 0.931 -3 -0.414
 2187873 2187874 Acid345_0121 Acid345_0122 TRUE 0.895 1 -0.146
 2187874 2187875 Acid345_0122 Acid345_0123 FALSE 0.307 27 0
 2187875 2187876 Acid345_0123 Acid345_0124 FALSE 0.047 654 0
 2187876 2187877 Acid345_0124 Acid345_0125 FALSE 0.118 153 0
 2187877 2187878 Acid345_0125 Acid345_0126 FALSE 0.196 94 -1.504
 2187879 2187880 Acid345_0127 Acid345_0128 FALSE 0.186 77 -0.028
 2187882 2187883 Acid345_0130 Acid345_0131 FALSE 0.276 31 0
 2187884 2187885 Acid345_0132 Acid345_0133 TRUE 0.931 135 31.09
 2187885 2187886 Acid345_0133 Acid345_0134 FALSE 0.225 81 -2.327
 2187886 2187887 Acid345_0134 Acid345_0135 FALSE 0.216 79 -0.46
 2187887 2187888 Acid345_0135 Acid345_0136 TRUE 0.997 10 128.352
 2187888 2187889 Acid345_0136 Acid345_0137 TRUE 0.707 83 2.5
 2187889 2187890 Acid345_0137 Acid345_0138 FALSE 0.468 15 -0.085
 2187890 2187891 Acid345_0138 Acid345_0139 TRUE 0.551 14 -2.092
 2187891 2187892 Acid345_0139 Acid345_0140 TRUE 0.85 4 -0.972
 2187893 2187894 Acid345_0141 Acid345_0142 FALSE 0.232 44 0
 2187894 2187895 Acid345_0142 Acid345_0143 FALSE 0.26 37 -0.763
 2187896 2187897 Acid345_0144 Acid345_0145 TRUE 0.96 178 415.742
 2187897 2187898 Acid345_0145 Acid345_0146 TRUE 0.996 16 418.034
 2187898 2187899 Acid345_0146 Acid345_0147 TRUE 0.987 62 76.043
 2187899 2187900 Acid345_0147 Acid345_0148 TRUE 0.612 131 2.458
 2187900 2187901 Acid345_0148 Acid345_0149 TRUE 0.804 213 9.605
 2187901 2187902 Acid345_0149 Acid345_0150 TRUE 0.965 37 20.212
 2187902 2187903 Acid345_0150 Acid345_0151 TRUE 0.926 19 2.385
 2187903 2187904 Acid345_0151 Acid345_0152 TRUE 0.619 129 2.5
 2187904 2187905 Acid345_0152 Acid345_0153 FALSE 0.123 143 -0.085
 2187905 2187906 Acid345_0153 Acid345_0154 TRUE 0.998 0 24.641
 2187906 2187907 Acid345_0154 Acid345_0155 FALSE 0.136 99 -0.05
 2187907 2187908 Acid345_0155 Acid345_0156 TRUE 0.999 0 93.322
 2187909 2187910 Acid345_0157 Acid345_0158 FALSE 0.113 166 -0.085
 2187910 2187911 Acid345_0158 Acid345_0159 FALSE 0.146 107 -0.085
 2187911 2187912 Acid345_0159 Acid345_0160 FALSE 0.25 45 -0.211
 2187913 2187914 Acid345_0161 Acid345_0162 FALSE 0.191 81 0
 2187916 2187917 Acid345_0164 Acid345_0165 FALSE 0.174 75 -0.026
 2187917 2187918 Acid345_0165 Acid345_0166 FALSE 0.116 190 -0.117
 2187921 2187922 Acid345_0169 Acid345_0170 FALSE 0.213 69 0
 2187922 2187923 Acid345_0170 Acid345_0171 TRUE 0.812 5 0
 2187923 2187924 Acid345_0171 Acid345_0172 TRUE 0.957 13 4.007
 2187924 2187925 Acid345_0172 Acid345_0173 FALSE 0.167 87 -0.085
 2187925 2187926 Acid345_0173 Acid345_0174 TRUE 0.656 10 -0.085
 2187926 2187927 Acid345_0174 Acid345_0175 TRUE 0.965 110 318.147
 2187927 2187928 Acid345_0175 Acid345_0176 FALSE 0.275 92 0
 2187931 2187932 Acid345_0179 Acid345_0180 FALSE 0.202 75 0
 2187932 2187933 Acid345_0180 Acid345_0181 TRUE 0.997 9 72.808
 2187933 2187934 Acid345_0181 Acid345_0182 TRUE 0.59 12 0
 2187935 2187936 Acid345_0183 Acid345_0184 FALSE 0.217 65 0
 2187937 2187938 Acid345_0185 Acid345_0186 TRUE 0.838 4 0
 2187939 2187940 Acid345_0187 Acid345_0188 TRUE 1 -3 1052.717
 2187940 2187941 Acid345_0188 Acid345_0189 TRUE 0.943 115 129.108
 2187941 2187942 Acid345_0189 Acid345_0190 FALSE 0.05 543 0
 2187942 2187943 Acid345_0190 Acid345_0191 FALSE 0.233 51 0
 2187944 2187945 Acid345_0192 Acid345_0193 TRUE 0.922 -3 0
 2187949 2187950 Acid345_0197 Acid345_0198 FALSE 0.232 43 0
 2187950 2187951 Acid345_0198 Acid345_0199 FALSE 0.129 131 0
 2187951 2187952 Acid345_0199 Acid345_0200 FALSE 0.207 72 0
 2187952 2187953 Acid345_0200 Acid345_0201 TRUE 0.997 -3 10.205
 2187953 2187954 Acid345_0201 Acid345_0202 FALSE 0.139 116 0
 2187954 2187955 Acid345_0202 Acid345_0203 TRUE 0.624 11 0
 2187958 2187959 Acid345_0206 Acid345_0207 FALSE 0.439 17 0
 2187959 2187960 Acid345_0207 Acid345_0208 FALSE 0.052 501 0
 2187960 2187961 Acid345_0208 Acid345_0209 TRUE 0.861 28 3.192
 2187961 2187962 Acid345_0209 Acid345_0210 TRUE 0.997 -3 4.036
 2187962 2187963 Acid345_0210 Acid345_0211 FALSE 0.171 104 -0.196
 2187963 1372908 Acid345_0211 Acid345_R0001 FALSE 0.231 54 0
 1372908 2187964 Acid345_R0001 Acid345_0212 FALSE 0.191 81 0
 2187964 2187965 Acid345_0212 Acid345_0213 FALSE 0.186 90 -0.652
 2187965 2187966 Acid345_0213 Acid345_0214 FALSE 0.419 19 -0.652
 2187968 2187969 Acid345_0216 Acid345_0217 TRUE 0.829 91 5.796
 2187969 2187970 Acid345_0217 Acid345_0218 TRUE 0.994 15 355.502
 2187970 2187971 Acid345_0218 Acid345_0219 TRUE 0.999 -3 30.822
 2187971 2187972 Acid345_0219 Acid345_0220 TRUE 0.975 55 146.896
 2187973 2187974 Acid345_0221 Acid345_0222 FALSE 0.136 119 0
 2187975 2187976 Acid345_0223 Acid345_0224 FALSE 0.397 132 -4.755
 2187976 2187977 Acid345_0224 Acid345_0225 FALSE 0.091 313 -2.244
 2187977 2187978 Acid345_0225 Acid345_0226 FALSE 0.068 300 -0.079
 2187978 2187979 Acid345_0226 Acid345_0227 TRUE 0.994 -3 2.76
 2187980 2187981 Acid345_0228 Acid345_0229 TRUE 0.916 -6 0
 2187983 2187984 Acid345_0231 Acid345_0232 FALSE 0.171 115 -4.536
 2187984 2187985 Acid345_0232 Acid345_0233 FALSE 0.267 33 0
 2187985 2187986 Acid345_0233 Acid345_0234 TRUE 0.812 5 0
 2187987 2187988 Acid345_0235 Acid345_0236 TRUE 1 -3 1312.293
 2187989 2187990 Acid345_0237 Acid345_0238 FALSE 0.139 107 -0.048
 2187990 2187991 Acid345_0238 Acid345_0239 FALSE 0.183 86 0
 2187995 2187996 Acid345_0243 Acid345_0244 FALSE 0.132 192 -2.717
 2187997 2187998 Acid345_0245 Acid345_0246 FALSE 0.151 102 0
 2187998 2187999 Acid345_0246 Acid345_0247 FALSE 0.087 207 -0.085
 2187999 2188000 Acid345_0247 Acid345_0248 TRUE 0.946 278 182.827
 2188001 2188002 Acid345_0249 Acid345_0250 FALSE 0.054 464 0
 2188002 2188003 Acid345_0250 Acid345_0251 TRUE 0.624 11 0
 2188003 2188004 Acid345_0251 Acid345_0252 TRUE 0.916 -6 0
 2188005 2188006 Acid345_0253 Acid345_0254 FALSE 0.233 49 0
 2188006 2188007 Acid345_0254 Acid345_0255 FALSE 0.108 173 0
 2188008 2188009 Acid345_0256 Acid345_0257 FALSE 0.229 55 0
 2188009 2188010 Acid345_0257 Acid345_0258 FALSE 0.099 255 -3.858
 2188010 2188011 Acid345_0258 Acid345_0259 FALSE 0.189 109 -27.521
 2188011 2188012 Acid345_0259 Acid345_0260 FALSE 0.05 545 0
 2188012 2188013 Acid345_0260 Acid345_0261 FALSE 0.143 110 0
 2188021 2188022 Acid345_0269 Acid345_0270 FALSE 0.358 22 0
 2188022 2188023 Acid345_0270 Acid345_0271 FALSE 0.084 239 0
 2188023 2188024 Acid345_0271 Acid345_0272 FALSE 0.083 240 0
 2188024 2188025 Acid345_0272 Acid345_0273 FALSE 0.166 94 0
 2188025 2188026 Acid345_0273 Acid345_0274 FALSE 0.143 110 0
 2188026 2188027 Acid345_0274 Acid345_0275 FALSE 0.219 63 0
 2188028 2188029 Acid345_0276 Acid345_0277 TRUE 0.992 4 6.238
 2188029 2188030 Acid345_0277 Acid345_0278 TRUE 0.996 -3 6.238
 2188030 2188031 Acid345_0278 Acid345_0279 FALSE 0.258 55 -4.296
 2188033 2188034 Acid345_0281 Acid345_0282 FALSE 0.266 42 -1.19
 2188034 2188035 Acid345_0282 Acid345_0283 TRUE 0.944 9 -0.983
 2188036 2188037 Acid345_0284 Acid345_0285 TRUE 0.999 0 55.197
 2188037 2188038 Acid345_0285 Acid345_0286 FALSE 0.186 84