VIMSS Operon Predictions for Brucella suis 1330

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 282011 282012 BR0001 BR0002 dnaA dnaN TRUE 0.975 229 926.979
 282012 282013 BR0002 BR0003 dnaN recF TRUE 0.979 182 949.463
 282013 282014 BR0003 BR0004 recF moeB FALSE 0.103 38 -15.583
 282015 282016 BR0005 BR0006 FALSE 0.088 -3 -1.993
 282016 282017 BR0006 BR0007 TRUE 0.97 24 313.253
 282017 282018 BR0007 BR0008 TRUE 0.993 0 466.98
 282018 282019 BR0008 BR0009 TRUE 0.622 112 14.361
 282019 282020 BR0009 BR0010 TRUE 0.888 47 13.37
 282020 282021 BR0010 BR0011 FALSE 0.136 231 0.004
 282021 282022 BR0011 BR0012 FALSE 0.329 46 0.004
 282022 282023 BR0012 BR0013 FALSE 0.343 40 0.004
 282023 282024 BR0013 BR0014 FALSE 0.044 265 0.002
 282026 2192530 BR0016 BR0017 mvaB FALSE 0.216 -3 0
 2192530 282027 BR0017 BR0018 mvaB FALSE 0.129 -7 0
 282027 282028 BR0018 BR0019 TRUE 0.99 12 401.785
 282028 282029 BR0019 BR0020 ivd TRUE 0.997 0 261.964
 282029 282030 BR0020 BR0021 ivd FALSE 0.394 177 -8.15
 282030 282031 BR0021 BR0022 FALSE 0.007 185 -1.784
 282031 282032 BR0022 BR0023 FALSE 0.007 177 -2.701
 282032 2192531 BR0023 BR_t01 FALSE 0.021 225 0
 2192531 282033 BR_t01 BR0024 FALSE 0.021 226 0
 282034 282035 BR0025 BR0026 aroA cmk TRUE 0.992 -3 364.379
 282035 282036 BR0026 BR0027 cmk rpsA TRUE 0.935 216 682.105
 282039 282040 BR0030 BR0031 FALSE 0.02 36 -3.581
 282040 282041 BR0031 BR0032 recR FALSE 0.491 16 -2.828
 282041 282042 BR0032 BR0033 recR TRUE 0.966 131 1138.301
 282042 282043 BR0033 BR0034 dnaX TRUE 0.977 25 300.256
 282044 282045 BR0035 BR0036 TRUE 0.759 29 11.358
 282046 282047 BR0037 BR0038 pheA kdsB TRUE 0.826 89 19.716
 282050 282051 BR0041 BR0042 cyoA FALSE 0.053 163 0.001
 282051 282052 BR0042 BR0043 cyoA qoxB TRUE 0.984 80 424.169
 282052 282053 BR0043 BR0044 qoxB TRUE 0.998 4 594.886
 282053 282054 BR0044 BR0045 qoxD TRUE 0.998 0 465.664
 282056 282057 BR0047 BR0048 FALSE 0.01 596 0
 282057 282058 BR0048 BR0049 TRUE 0.768 189 117.831
 282058 282059 BR0049 BR0050 FALSE 0.009 145 -1.624
 282060 282061 BR0051 BR0052 FALSE 0.194 70 0.003
 282061 282062 BR0052 BR0053 FALSE 0.004 337 0.004
 282062 282063 BR0053 BR0054 TRUE 0.606 11 0.004
 282063 282064 BR0054 BR0055 FALSE 0.21 135 0.004
 282064 282065 BR0055 BR0056 FALSE 0.005 253 0.004
 282067 282068 BR0058 BR0059 pgm FALSE 0.192 56 0.003
 282068 282069 BR0059 BR0060 FALSE 0.26 -25 0.003
 282070 282071 BR0061 BR0062 FALSE 0.016 73 -1.753
 282071 282072 BR0062 BR0063 FALSE 0.078 100 -6.067
 282072 282073 BR0063 BR0064 FALSE 0.031 20 -0.769
 282073 282074 BR0064 BR0065 FALSE 0.307 62 0.004
 282074 282075 BR0065 BR0066 FALSE 0.181 166 0.004
 282075 282076 BR0066 BR0067 FALSE 0.373 15 0.003
 282076 282077 BR0067 BR0068 FALSE 0.007 186 -1.396
 282078 282079 BR0069 BR0070 dnaE-1 TRUE 0.997 0 281.49
 282079 282080 BR0070 BR0071 TRUE 0.871 26 26.765
 282081 282082 BR0072 BR0073 FALSE 0.199 209 0.657
 282084 282085 BR0076 BR0077 FALSE 0.06 34 3.205
 282086 282087 BR0078 BR0079 FALSE 0.103 -15 0
 282088 282089 BR0080 BR0081 FALSE 0.037 440 5.279
 282089 282090 BR0081 BR0082 phhB TRUE 0.575 88 9.856
 282092 282093 BR0084 BR0085 FALSE 0.432 181 9.835
 282094 282095 BR0086 BR0087 TRUE 0.997 -3 449.385
 282095 282096 BR0087 BR0088 FALSE 0.006 234 2.322
 282096 282097 BR0088 BR0089 pat FALSE 0.399 115 3.682
 282098 282099 BR0090 BR0091 FALSE 0.035 550 6.018
 282099 282100 BR0091 BR0092 FALSE 0.067 153 0.001
 282100 282101 BR0092 BR0093 acnA FALSE 0.203 -16 0.001
 282102 282103 BR0094 BR0095 ccmA ccmB TRUE 0.998 0 529.512
 282103 282104 BR0095 BR0096 ccmB ccmC TRUE 0.99 58 541.247
 282104 282105 BR0096 BR0097 ccmC TRUE 0.858 -3 7.597
 282105 282106 BR0097 BR0098 cycY TRUE 0.875 -3 10.396
 282109 282110 BR0101 BR0102 FALSE 0.268 105 0.004
 282110 282111 BR0102 BR0103 FALSE 0.008 175 -6.754
 282114 282115 BR0106 BR0107 FALSE 0.004 278 -1.325
 282115 282116 BR0107 BR0108 TRUE 0.96 95 282.257
 282116 282117 BR0108 BR0109 cysW-1 TRUE 0.986 -10 415.964
 282117 282118 BR0109 BR0110 cysW-1 TRUE 0.984 98 392.625
 282118 282119 BR0110 BR0111 FALSE 0.013 791 -4.756
 282119 282120 BR0111 BR0112 pncB FALSE 0.068 90 -5.275
 282121 282122 BR0113 BR0114 FALSE 0.012 110 -1.007
 282122 282123 BR0114 BR0115 cscK FALSE 0.119 23 -6.541
 282123 282124 BR0115 BR0116 cscK FALSE 0.085 91 -5.77
 282124 282125 BR0116 BR0117 FALSE 0.06 121 -6.912
 282125 282126 BR0117 BR0118 FALSE 0.37 205 0.004
 282126 282127 BR0118 BR0119 FALSE 0.476 268 0.004
 282127 282128 BR0119 BR0120 FALSE 0.006 232 -4.215
 282128 282129 BR0120 BR0121 FALSE 0.019 39 -7.024
 282130 282131 BR0122 BR0123 polA FALSE 0.304 82 0.004
 282131 282132 BR0123 BR0124 polA FALSE 0.439 142 -14.967
 282133 282134 BR0125 BR0126 gyrB FALSE 0.189 60 0.003
 282134 282135 BR0126 BR0127 FALSE 0.165 104 0.003
 282135 282136 BR0127 BR0128 FALSE 0.015 89 -3.129
 282136 282137 BR0128 BR0129 FALSE 0.091 0 -2.453
 282137 2192533 BR0129 BR0130 FALSE 0.268 0 0
 2192533 282138 BR0130 BR0131 FALSE 0.07 34 0
 2192534 282139 BR0132 BR0133 FALSE 0.051 95 0
 282139 282140 BR0133 BR0134 FALSE 0.052 92 0
 282140 282141 BR0134 BR0135 FALSE 0.073 32 0
 282141 282142 BR0135 BR0136 FALSE 0.056 66 0
 282142 282143 BR0136 BR0137 FALSE 0.125 196 0.003
 282146 282147 BR0140 BR0141 TRUE 0.721 109 38.659
 282147 282148 BR0141 BR0142 trpS TRUE 0.53 58 7.823
 282148 282149 BR0142 BR0143 trpS mviN TRUE 0.767 7 24.003
 282149 282150 BR0143 BR0144 mviN TRUE 0.891 14 18.525
 282153 282154 BR0148 BR0149 lspA FALSE 0.004 323 -18.685
 282154 282155 BR0149 BR0150 lspA TRUE 0.918 2 -2.964
 282155 282156 BR0150 BR0151 TRUE 0.942 -3 33.933
 282156 282157 BR0151 BR0152 FALSE 0.011 113 -0.735
 282157 282158 BR0152 BR0153 ihfB TRUE 0.917 10 25.281
 282158 282159 BR0153 BR0154 ihfB sppA TRUE 0.801 47 18.754
 282160 282161 BR0155 BR0156 FALSE 0.311 323 32.511
 282161 282162 BR0156 BR0157 TRUE 0.988 12 432.042
 282162 282163 BR0157 BR0158 rpoN TRUE 0.896 296 654.69
 282165 282166 BR0160 BR0161 yfiA ptsN TRUE 0.922 103 106.933
 282167 282168 BR0162 BR0163 TRUE 0.72 106 23.143
 282168 282169 BR0163 BR0164 FALSE 0.245 31 0.003
 282169 282170 BR0164 BR0165 FALSE 0.241 -31 0.003
 282172 282173 BR0167 BR0168 FALSE 0.392 -3 0.001
 282175 282176 BR0170 BR0171 grpE FALSE 0.01 133 -14.874
 282176 282177 BR0171 BR0172 grpE hrcA TRUE 0.965 106 454.097
 282178 282179 BR0173 BR0174 rph FALSE 0.038 174 -5.88
 282179 282180 BR0174 BR0175 FALSE 0.317 3 -5.331
 282180 282181 BR0175 BR0176 TRUE 0.966 54 594.898
 282181 282182 BR0176 BR0177 FALSE 0.352 66 -36.558
 282182 282183 BR0177 BR0178 TRUE 0.984 -3 110.809
 282183 282184 BR0178 BR0179 cysG FALSE 0.027 220 -15.598
 282184 282185 BR0179 BR0180 cysG TRUE 0.815 18 22.587
 282185 282186 BR0180 BR0181 cysI TRUE 0.911 21 53.035
 282186 282187 BR0181 BR0182 cysI cysH TRUE 0.985 -10 543.984
 282187 282188 BR0182 BR0183 cysH TRUE 0.666 53 29.577
 282188 282189 BR0183 BR0184 FALSE 0.016 68 -3.846
 282195 282196 BR0190 BR0191 FALSE 0.063 115 -8.056
 282198 282199 BR0193 BR0194 cysD cysNC TRUE 0.994 0 252.957
 282199 282200 BR0194 BR0195 cysNC cysQ TRUE 0.916 48 27.883
 282200 2192536 BR0195 BR_t02 cysQ FALSE 0.034 133 0
 2192537 282202 BR0197 BR0198 FALSE 0.08 -25 0
 282202 282203 BR0198 BR0199 glpR FALSE 0.081 222 0.003
 282203 282204 BR0199 BR0200 glpR glpD TRUE 0.923 82 79.918
 282204 2192538 BR0200 BR0201 glpD FALSE 0.022 219 0
 2192538 282205 BR0201 BR0202 FALSE 0.03 149 0
 282205 282206 BR0202 BR0203 FALSE 0.16 481 26.833
 282206 282207 BR0203 BR0204 FALSE 0.401 91 9.24
 282207 2192539 BR0204 BR0205 FALSE 0.055 62 0
 282210 282211 BR0209 BR0210 FALSE 0.415 13 0.003
 282212 282213 BR0211 BR0212 TRUE 0.891 -3 53.412
 282213 282214 BR0212 BR0213 TRUE 0.983 -3 84.123
 282214 282215 BR0213 BR0214 TRUE 0.698 24 16.631
 282215 282216 BR0214 BR0215 thiG TRUE 0.989 -3 213.682
 282216 282217 BR0215 BR0216 thiG TRUE 0.995 2 591.143
 282217 282218 BR0216 BR0217 TRUE 0.988 -3 213.688
 282218 282219 BR0217 BR0218 thiD TRUE 0.974 0 15.589
 282220 282221 BR0219 BR0220 FALSE 0.092 99 -3.106
 282222 282223 BR0221 BR0222 FALSE 0.073 106 -5.564
 282223 282224 BR0222 BR0223 TRUE 0.995 -3 227.64
 282224 282225 BR0223 BR0224 TRUE 0.993 -3 212.555
 282225 282226 BR0224 BR0225 TRUE 0.919 73 193.234
 282226 282227 BR0225 BR0226 FALSE 0.007 186 -1.796
 282227 282228 BR0226 BR0227 FALSE 0.004 290 -1.325
 282229 282230 BR0228 BR0229 soxB FALSE 0.155 -31 0.001
 282230 282231 BR0229 BR0230 soxB soxD TRUE 0.989 19 164.597
 282231 282232 BR0230 BR0231 soxD soxA TRUE 0.996 0 166.403
 282232 282233 BR0231 BR0232 soxA soxG TRUE 0.982 11 27.839
 282234 282235 BR0233 BR0234 TRUE 0.614 58 2.112
 282236 282237 BR0235 BR0236 TRUE 0.873 61 9.33
 282237 282238 BR0236 BR0237 TRUE 0.988 3 32.594
 282238 282239 BR0237 BR0238 TRUE 0.932 8 0.79
 282239 282240 BR0238 BR0239 FALSE 0.411 3 -2.143
 282240 282241 BR0239 BR0240 TRUE 0.884 -3 5.794
 282241 282242 BR0240 BR0241 TRUE 0.675 -7 2.383
 282242 282243 BR0241 BR0242 TRUE 0.567 3 0.003
 282243 282244 BR0242 BR0243 TRUE 0.547 4 0.003
 282244 282245 BR0243 BR0244 TRUE 0.957 41 122.017
 282245 282246 BR0244 BR0245 TRUE 0.952 14 71.048
 282247 2192541 BR0246 BR_t03 FALSE 0.01 1015 0
 2192541 282248 BR_t03 BR0247 FALSE 0.025 185 0
 282248 282249 BR0247 BR0248 maf TRUE 0.659 52 7.751
 282249 282250 BR0248 BR0249 maf infA TRUE 0.928 34 98.622
 282250 282251 BR0249 BR0250 infA FALSE 0.312 112 0.216
 282251 282252 BR0250 BR0251 TRUE 0.959 7 57.125
 282252 282253 BR0251 BR0252 hisD TRUE 0.954 7 48.05
 282253 282254 BR0252 BR0253 hisD TRUE 0.782 75 37.721
 282254 282255 BR0253 BR0254 murA TRUE 0.529 271 47.433
 282255 282256 BR0254 BR0255 murA FALSE 0.229 223 2.237
 2192542 282257 BR_t04 BR0256 FALSE 0.051 95 0
 282259 282260 BR0258 BR0259 FALSE 0.149 13 0
 282260 282261 BR0259 BR0260 FALSE 0.01 592 0
 282261 282262 BR0260 BR0261 FALSE 0.014 558 0
 282262 282263 BR0261 BR0262 FALSE 0.01 588 0
 282264 282265 BR0263 BR0264 FALSE 0.241 114 0.004
 282268 282269 BR0267 BR0268 ureD-1 ureA-1 TRUE 0.892 153 112.13
 282269 282270 BR0268 BR0269