VIMSS Operon Predictions for Bifidobacterium longum DJO10A

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 2267734 2267735 Blon03000002 Blon03000003 TRUE 0.833 109 0.372
 2267735 2267736 Blon03000003 Blon03000004 TRUE 0.871 2 0.372
 2267736 2267737 Blon03000004 Blon03000005 TRUE 0.615 199 0.372
 2267738 2267739 Blon03000006 Blon03000007 FALSE 0.01 597 0
 2267740 2267741 Blon03000008 Blon03000009 FALSE 0.163 203 -1.17
 2267741 2267742 Blon03000009 Blon03000010 FALSE 0.47 0 0
 2267742 2267743 Blon03000010 Blon03000011 FALSE 0.337 128 0
 2267743 2267744 Blon03000011 Blon03000012 FALSE 0.187 478 15.146
 2267746 2267747 Blon03000014 Blon03000015 TRUE 0.984 83 -0.503
 2267747 2267748 Blon03000015 Blon03000016 TRUE 0.951 164 0.007
 2267748 2267749 Blon03000016 Blon03000017 FALSE 0.275 280 -6.341
 2267749 2267750 Blon03000017 Blon03000018 FALSE 0.063 260 -26.889
 2267750 2267751 Blon03000018 Blon03000019 FALSE 0.029 471 0.015
 2267751 2267752 Blon03000019 Blon03000020 FALSE 0.253 224 0.015
 2267752 2267753 Blon03000020 Blon03000021 TRUE 0.997 6 213.716
 2267753 2267754 Blon03000021 Blon03000022 TRUE 0.991 26 290.983
 2267754 2267755 Blon03000022 Blon03000023 TRUE 0.821 139 -45.727
 2267755 2267756 Blon03000023 Blon03000024 TRUE 0.981 12 255.242
 2267756 2267757 Blon03000024 Blon03000025 TRUE 0.868 7 0.372
 2267758 2267759 Blon03000026 Blon03000027 FALSE 0.34 201 -9.042
 2267760 2267761 Blon03000028 Blon03000029 TRUE 0.898 49 -85.971
 2267761 2267762 Blon03000029 Blon03000030 TRUE 0.862 19 -33.655
 2267762 2267763 Blon03000030 Blon03000031 TRUE 0.947 -10 86.487
 2267763 2267764 Blon03000031 Blon03000032 TRUE 0.972 76 60.512
 2267764 2267765 Blon03000032 Blon03000033 TRUE 0.967 2 58.778
 2267767 2267768 Blon03000035 Blon03000036 TRUE 0.905 0 0
 2267768 2267769 Blon03000036 Blon03000037 TRUE 0.535 16 0
 2267769 2267770 Blon03000037 Blon03000038 TRUE 0.958 0 34.615
 2267772 2267773 Blon03000040 Blon03000041 FALSE 0.284 226 -71.287
 2267773 2267774 Blon03000041 Blon03000042 FALSE 0.3 197 -37.933
 2267774 2267775 Blon03000042 Blon03000043 FALSE 0.049 248 -14.539
 2267777 2267778 Blon03000045 Blon03000046 TRUE 0.912 0 0.644
 2267781 2267782 Blon03000050 Blon03000053 FALSE 0.005 1101 0
 2267787 2267788 Blon03000059 Blon03000060 TRUE 0.998 2 627.062
 2267788 2267789 Blon03000060 Blon03000061 FALSE 0.48 189 -29.285
 2267789 2267790 Blon03000061 Blon03000062 FALSE 0.384 163 0.015
 2267790 2267791 Blon03000062 Blon03000063 TRUE 0.603 108 0.015
 2267791 2267792 Blon03000063 Blon03000064 TRUE 0.767 129 0.372
 2267792 2267793 Blon03000064 Blon03000065 TRUE 0.556 151 -12.358
 2267793 2267794 Blon03000065 Blon03000066 TRUE 0.609 71 0
 2267794 2267795 Blon03000066 Blon03000067 FALSE 0.362 134 0
 2267795 2267796 Blon03000067 Blon03000068 FALSE 0.003 783 -11.783
 2267797 2267798 Blon03000069 Blon03000070 FALSE 0.006 920 0
 2267800 2267801 Blon03000072 Blon03000073 FALSE 0.004 1190 0
 2267802 2267803 Blon03000074 Blon03000075 FALSE 0.005 1072 0
 2267805 2267806 Blon03000077 Blon03000078 FALSE 0.009 599 0
 2267808 2267809 Blon03000080 Blon03000081 TRUE 0.661 106 -1.173
 2267809 2267810 Blon03000081 Blon03000082 FALSE 0.178 111 -6.058
 2267810 2267811 Blon03000082 Blon03000083 TRUE 0.996 71 6.421
 2267811 2267812 Blon03000083 Blon03000084 FALSE 0.251 83 -8.893
 2267812 2267813 Blon03000084 Blon03000085 FALSE 0.248 56 -6.831
 2267813 2267814 Blon03000085 Blon03000086 FALSE 0.477 142 -34.822
 2267814 2267815 Blon03000086 Blon03000087 TRUE 0.997 0 181.805
 2267815 2267816 Blon03000087 Blon03000088 TRUE 0.912 -3 -14.81
 2267816 2267817 Blon03000088 Blon03000089 TRUE 0.981 18 10.713
 2267817 2267818 Blon03000089 Blon03000090 TRUE 0.976 136 9.433
 2267818 2267819 Blon03000090 Blon03000091 TRUE 0.96 -12 146.781
 2267819 2267820 Blon03000091 Blon03000092 TRUE 0.983 9 12.583
 2267820 2267821 Blon03000092 Blon03000093 FALSE 0.001 622 -1.37
 2267822 2267823 Blon03000094 Blon03000095 FALSE 0.417 102 -0.559
 2267823 2267824 Blon03000095 Blon03000096 FALSE 0.2 102 -7.29
 2267824 2267825 Blon03000096 Blon03000097 FALSE 0.214 40 -6.921
 2267825 2267826 Blon03000097 Blon03000098 FALSE 0.003 1671 -1.093
 2267826 2267827 Blon03000098 Blon03000099 FALSE 0.23 169 0
 2267827 2267828 Blon03000099 Blon03000100 FALSE 0.179 200 0
 2267828 2267829 Blon03000100 Blon03000103 FALSE 0.003 2095 0
 2267830 2267831 Blon03000104 Blon03000105 FALSE 0.222 174 0
 2267832 2267833 Blon03000106 Blon03000107 FALSE 0.188 -786 0
 2267835 2267836 Blon03000109 Blon03000110 FALSE 0.14 321 0.015
 2267836 2267837 Blon03000110 Blon03000111 FALSE 0.474 32 0
 2267837 2267838 Blon03000111 Blon03000112 FALSE 0.086 258 0
 2267839 2267840 Blon03000113 Blon03000114 FALSE 0.285 139 0
 2267840 2267841 Blon03000114 Blon03000115 FALSE 0.325 131 0
 2267843 2267844 Blon03000117 Blon03000118 FALSE 0.004 1378 0
 2267844 2267845 Blon03000118 Blon03000119 FALSE 0.299 136 0
 2267846 2267847 Blon03000120 Blon03000121 FALSE 0.245 158 0
 2267848 2267849 Blon03000122 Blon03000123 FALSE 0 1316 -4.189
 2267850 2267851 Blon03000124 Blon03000125 FALSE 0.047 483 0.015
 2267852 2267853 Blon03000126 Blon03000127 FALSE 0.015 536 0
 2267853 2267854 Blon03000127 Blon03000128 TRUE 0.691 -78 0
 2267854 2267855 Blon03000128 Blon03000129 TRUE 0.958 24 2.773
 2267855 2267856 Blon03000129 Blon03000130 TRUE 0.788 111 -54.608
 2267856 2267857 Blon03000130 Blon03000131 TRUE 0.843 76 -102.325
 2267857 2267858 Blon03000131 Blon03000132 TRUE 0.836 63 -18.076
 2267858 2267859 Blon03000132 Blon03000133 TRUE 0.996 27 54.552
 2267859 2267860 Blon03000133 Blon03000134 TRUE 0.684 14 -11.803
 2267860 2267861 Blon03000134 Blon03000135 TRUE 0.908 -10 24.002
 2267861 2267862 Blon03000135 Blon03000136 TRUE 0.952 0 24.002
 2267862 2267863 Blon03000136 Blon03000137 TRUE 0.972 43 61.818
 2267863 2267864 Blon03000137 Blon03000138 TRUE 0.885 7 3.206
 2267864 2267865 Blon03000138 Blon03000139 TRUE 0.814 101 -0.785
 2267865 2267866 Blon03000139 Blon03000140 FALSE 0.033 356 0
 2267867 2267868 Blon03000141 Blon03000142 FALSE 0.494 132 -2.765
 2267868 2267869 Blon03000142 Blon03000143 TRUE 0.567 140 -0.32
 2267869 2267870 Blon03000143 Blon03000144 FALSE 0.478 13 0
 2267870 2267871 Blon03000144 Blon03000145 FALSE 0.496 47 0
 2267871 2267872 Blon03000145 Blon03000146 TRUE 0.721 140 0.372
 2267872 2267873 Blon03000146 Blon03000147 FALSE 0.002 355 -2.343
 2267873 2267874 Blon03000147 Blon03000148 FALSE 0.285 -157 0
 2267876 2267877 Blon03000150 Blon03000151 TRUE 0.921 32 0.939
 2267877 2267878 Blon03000151 Blon03000152 TRUE 0.864 134 3.165
 2267878 2267879 Blon03000152 Blon03000153 TRUE 0.998 0 713.142
 2267879 2267880 Blon03000153 Blon03000154 TRUE 0.685 97 -63.718
 2267880 2267881 Blon03000154 Blon03000155 TRUE 0.851 64 -9.991
 2267881 2267882 Blon03000155 Blon03000156 TRUE 0.948 102 3.486
 2267882 2267883 Blon03000156 Blon03000157 TRUE 0.998 0 586.374
 2267883 2267884 Blon03000157 Blon03000158 TRUE 0.998 58 450.574
 2267884 2267885 Blon03000158 Blon03000159 TRUE 0.985 6 280.292
 2267885 2267886 Blon03000159 Blon03000160 FALSE 0.49 139 -21.998
 2267886 2267887 Blon03000160 Blon03000161 TRUE 0.874 140 31.653
 2267891 2267892 Blon03000165 Blon03000166 TRUE 0.925 56 -5.346
 2267893 2267894 Blon03000167 Blon03000168 FALSE 0.332 354 0
 2267894 2267895 Blon03000168 Blon03000169 TRUE 0.793 120 0
 2267895 2267896 Blon03000169 Blon03000170 FALSE 0.199 163 -1.252
 2267896 2267897 Blon03000170 Blon03000171 FALSE 0.005 1073 0
 2267898 2267899 Blon03000172 Blon03000173 FALSE 0.45 150 -6.962
 2267899 2267900 Blon03000173 Blon03000174 FALSE 0.321 -3 -8.664
 2267900 2267901 Blon03000174 Blon03000175 FALSE 0.349 111 -5.879
 2267901 2267902 Blon03000175 Blon03000176 TRUE 0.975 64 33.347
 2267902 2267903 Blon03000176 Blon03000177 TRUE 0.993 58 118.394
 2267903 2267904 Blon03000177 Blon03000178 TRUE 0.699 169 -38.567
 2267904 2267905 Blon03000178 Blon03000179 TRUE 0.884 199 30.827
 2267905 2267906 Blon03000179 Blon03000180 TRUE 0.644 0 -19.481
 2267906 2267907 Blon03000180 Blon03000181 FALSE 0.422 166 -12.544
 2267907 2267908 Blon03000181 Blon03000182 FALSE 0.237 -169 0
 2267908 2267909 Blon03000182 Blon03000183 FALSE 0.245 -136 0
 2267909 2267910 Blon03000183 Blon03000184 FALSE 0.495 8 0
 2267910 2267911 Blon03000184 Blon03000185 TRUE 0.695 -129 0
 2267911 2267912 Blon03000185 Blon03000187 FALSE 0.003 2271 0
 2267912 2267913 Blon03000187 Blon03000188 TRUE 0.853 -3 1.961
 2267913 2267914 Blon03000188 Blon03000189 TRUE 0.562 -3 0.015
 2267915 2267916 Blon03000190 Blon03000191 TRUE 0.965 0 30.235
 2267916 2267917 Blon03000191 Blon03000192 TRUE 0.97 0 38.792
 2267917 2267918 Blon03000192 Blon03000193 TRUE 0.811 -3 0.372
 2267919 2267920 Blon03000194 Blon03000195 TRUE 0.522 71 -0.071
 2267920 2267921 Blon03000195 Blon03000196 FALSE 0.241 44 -1.765
 2267923 2267924 Blon03000198 Blon03000199 TRUE 0.601 81 0
 2267924 2267925 Blon03000199 Blon03000200 FALSE 0.225 391 0
 2267927 2267928 Blon03000202 Blon03000203 TRUE 0.77 211 24.912
 2267928 2267929 Blon03000203 Blon03000204 TRUE 0.534 23 0
 2267929 2267930 Blon03000204 Blon03000205 FALSE 0.25 -90 0
 2267930 2267931 Blon03000205 Blon03000206 FALSE 0.192 -720 0
 2267931 2267932 Blon03000206 Blon03000207 FALSE 0.01 574 0
 2267932 2267933 Blon03000207 Blon03000208 TRUE 0.994 51 759.503
 2267933 2267934 Blon03000208 Blon03000209 FALSE 0.301 356 -103.121
 2267934 2267935 Blon03000209 Blon03000210 TRUE 0.695 7 0.015
 2267935 2267936 Blon03000210 Blon03000211 TRUE 0.526 85 0
 2267936 2267937 Blon03000211 Blon03000212 FALSE 0.017 432 0
 2267937 2267938 Blon03000212 Blon03000213 FALSE 0.258 -64 0
 2267939 2267940 Blon03000214 Blon03000215 FALSE 0.404 249 0.372
 2267942 2267943 Blon03000217 Blon03000219 FALSE 0.325 131 0
 2267943 2267944 Blon03000219 Blon03000220 FALSE 0.289 -13 0
 2267944 2267945 Blon03000220 Blon03000221 FALSE 0.393 -3 0
 2267945 2267946 Blon03000221 Blon03000222 FALSE 0.469 -9 0.015
 2267946 2267947 Blon03000222 Blon03000223 FALSE 0.496 136 0.015
 2267947 2267948 Blon03000223 Blon03000224 TRUE 0.546 78 0
 2267948 2267949 Blon03000224 Blon03000225 FALSE 0.085 259 0
 2267949 2267950 Blon03000225 Blon03000226 TRUE 0.641 28 0.015
 2267950 2267951 Blon03000226 Blon03000227 FALSE 0.032 358 0
 2267951 2267952 Blon03000227 Blon03000228 FALSE 0.272 144 0
 2267952 2267953 Blon03000228 Blon03000229 FALSE 0.265 146 0
 2267953 2267954 Blon03000229 Blon03000230 FALSE 0.481 12 0
 2267954 2267955 Blon03000230 Blon03000231 FALSE 0.02 407 0
 2267957 2267958 Blon03000235 Blon03000236 FALSE 0.256 391 0.015
 2267958 2267959 Blon03000236 Blon03000237 FALSE 0.059 290 0
 2267960 2267961 Blon03000238 Blon03000239 FALSE 0.176 -1116 0
 2267962 2267963 Blon03000241 Blon03000242 TRUE 0.891 73 0.372
 2267963 2267964 Blon03000242 Blon03000243 TRUE 0.937 104 2.675
 2267964 2267965 Blon03000243 Blon03000244 FALSE 0.476 15 0
 2267965 2267966 Blon03000244 Blon03000245 FALSE 0.393 -3 0
 2267966 2267967 Blon03000245 Blon03000246 TRUE 0.613 105 0.015
 2267967 2267968 Blon03000246 Blon03000247 TRUE 0.569 114 0.015
 2267968 2267969 Blon03000247 Blon03000248 TRUE 0.701 81 0.015
 2267969 2267970 Blon03000248 Blon03000249 FALSE 0.47 0 0
 2267970 2267971 Blon03000249 Blon03000250 FALSE 0.289 -13 0
 2267971 2267972 Blon03000250 Blon03000251 FALSE 0.393 -3 0
 2267972 2267973 Blon03000251 Blon03000252 FALSE 0.454 103 0
 2267973 2267974 Blon03000252 Blon03000253 FALSE 0.393 -3 0
 2267976 2267977 Blon03000255 Blon03000256 FALSE 0.205 153 -2.197
 2267977 2267978 Blon03000256 Blon03000257 TRUE 0.932 46 6.595
 2267979 2267980 Blon03000258 Blon03000259 FALSE 0.03 361 0
 2267980 2267981 Blon03000259 Blon03000260 FALSE 0.434 108 0
 2267981 2267982 Blon03000260 Blon03000261 FALSE 0.4 114 0
 2267983 2267984 Blon03000262 Blon03000263 FALSE