VIMSS Operon Predictions for Bacillus cereus ATCC 10987

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 643211 643212 BCE0001 BCE0002 dnaA dnaN TRUE 0.971 179 809.359
 643212 643213 BCE0002 BCE0003 dnaN TRUE 0.848 116 55.981
 643213 643214 BCE0003 BCE0004 recF TRUE 0.991 12 66.146
 643214 643215 BCE0004 BCE0005 recF gyrB TRUE 0.995 39 149.219
 643215 643216 BCE0005 BCE0006 gyrB gyrA TRUE 0.992 89 189.495
 643216 643217 BCE0006 BCE0007 gyrA FALSE 0.058 175 0
 643217 643218 BCE0007 BCE_5738 Bc16SA FALSE 0.413 -4 0
 643218 643219 BCE_5738 BCE_5640 Bc16SA tRNA-Ile FALSE 0.084 149 0
 643219 643220 BCE_5640 BCE_5641 tRNA-Ile tRNA-Ala FALSE 0.397 9 0
 643220 643221 BCE_5641 BCE_5739 tRNA-Ala Bc23SA FALSE 0.121 95 0
 643221 643222 BCE_5739 BCE_5740 Bc23SA Bc5SA FALSE 0.172 50 0
 643224 643225 BCE0009 BCE0010 guaB dacA FALSE 0.287 105 -5.543
 643225 643226 BCE0010 BCE0011 dacA FALSE 0.18 162 -6.746
 643226 643227 BCE0011 BCE0012 TRUE 0.995 19 239.614
 643227 643228 BCE0012 BCE0013 serS FALSE 0.398 328 -29.946
 643228 643229 BCE0013 BCE_5642 serS tRNA-Ser FALSE 0.076 157 0
 643229 643230 BCE_5642 BCE0014 tRNA-Ser FALSE 0.223 34 0
 643231 643232 BCE0015 BCE0016 TRUE 0.997 3 25.051
 643232 643233 BCE0016 BCE0017 FALSE 0.254 126 -5.119
 643234 643235 BCE0018 BCE0019 FALSE 0.304 -10 0.046
 643235 643236 BCE0019 BCE0020 dnaX FALSE 0.297 477 -6.97
 643236 643237 BCE0020 BCE0021 dnaX TRUE 0.99 23 106.642
 643237 643238 BCE0021 BCE0022 recR TRUE 0.994 15 895.482
 643238 643239 BCE0022 BCE0023 recR TRUE 0.953 15 15.824
 643239 643240 BCE0023 BCE0024 FALSE 0.28 -84 0
 643240 643241 BCE0024 BCE0025 bofA FALSE 0.122 98 0
 643241 643242 BCE0025 BCE_5741 bofA Bc16SB FALSE 0.023 247 0
 643242 643243 BCE_5741 BCE_5643 Bc16SB tRNA-Ile FALSE 0.084 149 0
 643243 643244 BCE_5643 BCE_5644 tRNA-Ile tRNA-Ala FALSE 0.397 9 0
 643244 643245 BCE_5644 BCE_5742 tRNA-Ala Bc23SB FALSE 0.121 95 0
 643245 643246 BCE_5742 BCE_5743 Bc23SB Bc5SB FALSE 0.172 50 0
 643246 643247 BCE_5743 BCE0026 Bc5SB FALSE 0.045 196 0
 643247 643248 BCE0026 BCE0027 cad FALSE 0.111 73 -0.356
 643248 643249 BCE0027 BCE0028 cad tmk TRUE 0.981 2 22.691
 643249 643250 BCE0028 BCE0029 tmk holB TRUE 0.986 36 162.493
 643250 643251 BCE0029 BCE0030 holB TRUE 0.992 -3 69.155
 643251 643252 BCE0030 BCE0031 TRUE 0.99 0 50.627
 643252 643253 BCE0031 BCE0032 TRUE 0.863 121 17.447
 643253 643254 BCE0032 BCE0033 TRUE 0.977 -13 88.997
 643254 643255 BCE0033 BCE0034 TRUE 0.973 -31 13.307
 643257 643258 BCE0036 BCE0037 metS TRUE 0.945 166 195.05
 643258 643259 BCE0037 BCE0038 TRUE 0.864 214 70.711
 643259 643260 BCE0038 BCE0039 ksgA TRUE 0.993 -3 103.866
 643260 643261 BCE0039 BCE0040 ksgA TRUE 0.924 111 2.718
 643261 643262 BCE0040 BCE0041 FALSE 0.318 239 16.878
 643262 643263 BCE0041 BCE0042 sspF FALSE 0.357 92 3.666
 643263 643264 BCE0042 BCE0043 sspF ispE FALSE 0.238 197 2.162
 643264 643265 BCE0043 BCE0044 ispE purR TRUE 0.958 55 24.124
 643265 643266 BCE0044 BCE0045 purR TRUE 0.511 114 4.752
 643266 643267 BCE0045 BCE0046 spoVG FALSE 0.441 99 1.727
 643267 643268 BCE0046 BCE0047 spoVG gcaD FALSE 0.313 323 23.31
 643268 643269 BCE0047 BCE0048 gcaD prs TRUE 0.988 19 132.759
 643269 643270 BCE0048 BCE0049 prs spoVC TRUE 0.979 1 418.128
 643270 643271 BCE0049 BCE0050 spoVC FALSE 0.371 71 4.436
 643271 643272 BCE0050 BCE0051 mfd FALSE 0.359 107 3.925
 643272 643273 BCE0051 BCE0052 mfd spoVT TRUE 0.944 137 6.526
 643273 643274 BCE0052 BCE0053 spoVT FALSE 0.108 231 4.789
 643274 643275 BCE0053 BCE0054 FALSE 0.461 106 6.399
 643275 643276 BCE0054 BCE0055 TRUE 0.979 15 27.802
 643276 643277 BCE0055 BCE0056 TRUE 0.941 59 23.93
 643277 643278 BCE0056 BCE0057 TRUE 0.968 -3 7.188
 643278 643279 BCE0057 BCE0058 divIC TRUE 0.631 -42 5.331
 643279 643280 BCE0058 BCE0059 divIC TRUE 0.576 88 16.811
 643280 643281 BCE0059 BCE_5645 tRNA-Met FALSE 0.072 161 0
 643281 643282 BCE_5645 BCE_5646 tRNA-Met tRNA-Glu FALSE 0.345 14 0
 643282 643283 BCE_5646 BCE0060 tRNA-Glu spoIIE FALSE 0.009 353 0
 643283 643284 BCE0060 BCE0061 spoIIE TRUE 0.566 226 12.33
 643284 643285 BCE0061 BCE0062 hpt TRUE 0.993 -3 120.255
 643285 643286 BCE0062 BCE0063 hpt ftsH TRUE 0.964 86 132.562
 643286 643287 BCE0063 BCE0064 ftsH TRUE 0.858 226 -12.241
 643287 643288 BCE0064 BCE0065 hslO TRUE 0.902 7 1.176
 643288 643289 BCE0065 BCE0066 hslO cysK FALSE 0.3 105 -16.933
 643289 643290 BCE0066 BCE0067 cysK pabB FALSE 0.346 175 -13.775
 643290 643291 BCE0067 BCE0068 pabB pabA TRUE 0.998 6 183.512
 643291 643292 BCE0068 BCE0069 pabA pabC TRUE 0.99 -6 4.85
 643292 643293 BCE0069 BCE0070 pabC folP TRUE 0.984 -7 4.85
 643293 643294 BCE0070 BCE0071 folP folB TRUE 0.997 1 195.118
 643294 643295 BCE0071 BCE0072 folB folK TRUE 0.997 -3 161.099
 643295 643296 BCE0072 BCE0073 folK TRUE 0.747 -48 4.126
 643296 643297 BCE0073 BCE0074 TRUE 0.734 24 2.961
 643297 643298 BCE0074 BCE0075 lysS TRUE 0.981 160 -6.166
 643298 643299 BCE0075 BCE0076 lysS FALSE 0.121 96 0
 643299 643300 BCE0076 BCE0077 FALSE 0.438 -3 0
 643300 643301 BCE0077 BCE_5744 Bc16SC FALSE 0.183 45 0
 643301 643302 BCE_5744 BCE_5745 Bc16SC Bc23SC FALSE 0.057 176 0
 643302 643303 BCE_5745 BCE_5746 Bc23SC Bc5SC FALSE 0.172 50 0
 643303 643304 BCE_5746 BCE0078 Bc5SC ctsR FALSE 0.039 207 0
 643304 643305 BCE0078 BCE0079 ctsR TRUE 0.883 174 52.381
 643305 643306 BCE0079 BCE0080 TRUE 0.993 5 75.898
 643306 643307 BCE0080 BCE0081 TRUE 0.987 23 51.929
 643307 643308 BCE0081 BCE0082 radA TRUE 0.944 97 28.953
 643308 643309 BCE0082 BCE0083 radA TRUE 0.989 4 107.837
 643309 643310 BCE0083 BCE0084 TRUE 0.868 161 13.471
 643310 643311 BCE0084 BCE0085 ispD TRUE 0.981 17 26.147
 643311 643312 BCE0085 BCE0086 ispD ispF TRUE 0.993 116 600.539
 643312 643313 BCE0086 BCE0087 ispF gltX TRUE 0.931 90 -25.59
 643313 643314 BCE0087 BCE0088 gltX cysE FALSE 0.232 431 16.446
 643314 643315 BCE0088 BCE0089 cysE cysS TRUE 0.991 -19 106.66
 643315 643316 BCE0089 BCE0090 cysS TRUE 0.994 3 124.476
 643316 643317 BCE0090 BCE0091 TRUE 0.997 -3 85.072
 643317 643318 BCE0091 BCE0092 TRUE 0.99 4 104.89
 643318 643319 BCE0092 BCE0093 sigH TRUE 0.935 68 36.923
 643319 643320 BCE0093 BCE0094 sigH rpmG FALSE 0.443 128 12.011
 643320 643321 BCE0094 BCE0095 rpmG TRUE 0.98 33 45.918
 643321 643322 BCE0095 BCE0096 nusG TRUE 0.971 132 272.278
 643322 643323 BCE0096 BCE0097 nusG rplK TRUE 0.962 168 1033.873
 643323 643324 BCE0097 BCE0098 rplK rplA TRUE 0.983 178 1342.839
 643324 643325 BCE0098 BCE0099 rplA rplJ TRUE 0.962 233 973.765
 643325 643326 BCE0099 BCE0100 rplJ rplL TRUE 0.994 68 1315.397
 643326 643327 BCE0100 BCE0101 rplL TRUE 0.952 77 8.203
 643327 643328 BCE0101 BCE0102 rpoB FALSE 0.248 294 5.797
 643328 643329 BCE0102 BCE0103 rpoB rpoC TRUE 0.996 38 237.586
 643329 643330 BCE0103 BCE0104 rpoC TRUE 0.949 81 22.857
 643330 643331 BCE0104 BCE0105 rpsL TRUE 0.966 115 28.393
 643331 643332 BCE0105 BCE0106 rpsL rpsG TRUE 0.998 30 1299.149
 643332 643333 BCE0106 BCE0107 rpsG fusA TRUE 0.962 207 1124.559
 643333 643334 BCE0107 BCE0108 fusA tuf TRUE 0.993 118 491.533
 643334 643335 BCE0108 BCE0109 tuf rpsJ TRUE 0.782 401 408.77
 643335 643336 BCE0109 BCE0110 rpsJ rplC TRUE 0.996 35 1105.208
 643336 643337 BCE0110 BCE0111 rplC rplD TRUE 0.997 26 1225.709
 643337 643338 BCE0111 BCE0112 rplD rplW TRUE 0.999 0 1264.75
 643338 643339 BCE0112 BCE0113 rplW rplB TRUE 0.997 29 1237.111
 643339 643340 BCE0113 BCE0114 rplB rpsS TRUE 0.994 61 1269.216
 643340 643341 BCE0114 BCE0115 rpsS rplV TRUE 0.998 18 1164.697
 643341 643342 BCE0115 BCE0116 rplV rpsC TRUE 0.999 4 1166.389
 643342 643343 BCE0116 BCE0117 rpsC rplP TRUE 0.999 2 1257.732
 643343 643344 BCE0117 BCE0118 rplP rpmC TRUE 0.998 -34 1073.239
 643344 643345 BCE0118 BCE0119 rpmC rpsQ TRUE 0.998 21 1056.296
 643345 643346 BCE0119 BCE0120 rpsQ rplN TRUE 0.996 44 1159.862
 643346 643347 BCE0120 BCE0121 rplN rplX TRUE 0.996 39 1273.583
 643347 643348 BCE0121 BCE0122 rplX rplE TRUE 0.997 27 1279.359
 643348 643349 BCE0122 BCE0123 rplE rpsN TRUE 0.996 34 371.652
 643349 643350 BCE0123 BCE0124 rpsN rpsH TRUE 0.996 30 368.331
 643350 643351 BCE0124 BCE0125 rpsH rplF TRUE 0.997 33 1436.859
 643351 643352 BCE0125 BCE0126 rplF rplR TRUE 0.997 32 1391.625
 643352 643353 BCE0126 BCE0127 rplR rpsE TRUE 0.998 22 1216.84
 643353 643354 BCE0127 BCE0128 rpsE rpmD TRUE 0.998 14 1031.503
 643354 643355 BCE0128 BCE0129 rpmD rplO TRUE 0.997 34 1127.499
 643355 643356 BCE0129 BCE0130 rplO secY TRUE 0.997 0 1054.304
 643356 643357 BCE0130 BCE0131 secY adk TRUE 0.983 57 450.926
 643357 643358 BCE0131 BCE0132 adk maP TRUE 0.992 0 139.55
 643358 643359 BCE0132 BCE0133 maP infA TRUE 0.971 69 126.003
 643359 643360 BCE0133 BCE0134 infA rpmJ TRUE 0.984 36 404.958
 643360 643361 BCE0134 BCE0135 rpmJ rpsM TRUE 0.995 22 719.655
 643361 643362 BCE0135 BCE0136 rpsM rpsK TRUE 0.998 25 1375.26
 643362 643363 BCE0136 BCE0137 rpsK rpoA TRUE 0.947 181 1331.492
 643363 643364 BCE0137 BCE0138 rpoA rplQ TRUE 0.991 36 1223.022
 643364 643365 BCE0138 BCE0139 rplQ TRUE 0.88 104 50.698
 643365 643366 BCE0139 BCE0140 TRUE 0.996 -24 155.963
 643366 643367 BCE0140 BCE0141 TRUE 0.996 -12 177.429
 643367 643368 BCE0141 BCE0142 truA TRUE 0.992 15 38.011
 643368 643369 BCE0142 BCE0143 truA rplM TRUE 0.975 153 58.682
 643369 643370 BCE0143 BCE0144 rplM rpsI TRUE 0.998 22 1331.27
 643370 643371 BCE0144 BCE0145 rpsI FALSE 0.047 163 -2.28
 643371 643372 BCE0145 BCE0146 cwlD FALSE 0.394 67 5.243
 643372 643373 BCE0146 BCE0147 cwlD FALSE 0.362 145 3.617
 643377 643378 BCE0151 BCE0152 FALSE 0.042 158 -7.592
 643378 643379 BCE0152 BCE_5747 Bc16SD FALSE 0.413 -4 0
 643379 643380 BCE_5747 BCE_5748 Bc16SD Bc23SD FALSE 0.056 177 0
 643380 643381 BCE_5748 BCE_5749 Bc23SD Bc5SD FALSE 0.122 89 0
 643381 643382 BCE_5749 BCE_5647 Bc5SD tRNA-Asn FALSE 0.353 13 0
 643382 643383 BCE_5647 BCE_5648 tRNA-Asn tRNA-Thr FALSE 0.435 5 0
 643383 643384 BCE_5648 BCE_5649 tRNA-Thr tRNA-Glu FALSE 0.276 25 0
 643384 643385 BCE_5649 BCE_5650 tRNA-Glu tRNA-Val FALSE 0.422 6 0
 643385 643386 BCE_5650 BCE_5651 tRNA-Val tRNA-Tyr FALSE 0.324 18 0
 643386 643387 BCE_5651 BCE_5652 tRNA-Tyr tRNA-Gln FALSE 0.139 66 0
 643387 643388 BCE_5652 BCE_5653 tRNA-Gln tRNA-Lys FALSE 0.422 6 0
 643388 643389 BCE_5653 BCE_5654 tRNA-Lys tRNA-Gly FALSE 0.422 6 0
 643389 643390 BCE_5654 BCE_5655 tRNA-Gly tRNA-Ala FALSE 0.38 11 0
 643390 643391 BCE_5655 BCE0153 tRNA-Ala FALSE 0.113 116 0
 643391 643392 BCE0153 BCE0154 rocF FALSE 0.095 210 -21.492
 643392 643393 BCE0154 BCE0155 rocF FALSE 0.092 249 0.624
 643393 643394 BCE0155 BCE0156 TRUE 0.983 -7 35.28
 643394 643395 BCE0156 BCE0157 glmM TRUE 0.979 -7 13.385
 643395 643396 BCE0157 BCE0158 glmM glmS FALSE 0.288 485 18.889
 643396 643397 BCE0158 BCE0159 glmS FALSE 0.015 427 0
 643397 643398 BCE0159 BCE0160 FALSE 0.017 390 0
 643398 643399 BCE0160 BCE0161 FALSE 0.004 720 0
 643399 643400 BCE0161 BCE0162 FALSE 0.005 547 0
 643400 643401 BCE0162 BCE0163 FALSE 0.402 3 -0.632
 643402 643403 BCE0164 BCE0165 FALSE 0.271 26 0
 643403 643404 BCE0165 BCE0166 FALSE 0.271 26 0
 643405 643406 BCE0167 BCE0168 TRUE 0.991 -7 84.577
 643408 643409 BCE0170 BCE0171 FALSE 0.301 21 0
 643411 643412 BCE0173 BCE0174 FALSE 0.024 246 0
 643412 643413 BCE0174 BCE0175 TRUE 0.969 -31