VIMSS Operon Predictions for Bacillus subtilis subsp. subtilis str. 168

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 36534 36535 BSU00010 BSU00020 dnaA dnaN TRUE 0.978 189 939.561
 36535 36536 BSU00020 BSU00030 dnaN yaaA TRUE 0.874 131 82.672
 36536 36537 BSU00030 BSU00040 yaaA recF TRUE 0.993 16 88.192
 36537 36538 BSU00040 BSU00050 recF yaaB FALSE 0.464 18 0
 36538 36539 BSU00050 BSU00060 yaaB gyrB FALSE 0.072 141 0
 36539 36540 BSU00060 BSU00070 gyrB gyrA TRUE 0.983 211 256.524
 36540 2209329 BSU00070 BSUr001 gyrA rrnO-16S FALSE 0.032 351 0
 2209329 2209330 BSUr001 BSUt001 rrnO-16S trnO-Ile FALSE 0.1 101 0
 2209330 2209331 BSUt001 BSUt002 trnO-Ile trnO-Ala FALSE 0.477 12 0
 2209331 2209332 BSUt002 BSUr002 trnO-Ala rrnO-23S FALSE 0.127 82 0
 2209332 2209333 BSUr002 BSUr003 rrnO-23S rrnO-5S FALSE 0.234 56 0
 36542 36543 BSU00090 BSU00100 guaB dacA FALSE 0.294 153 -1.222
 36543 36544 BSU00100 BSU00110 dacA yaaD FALSE 0.09 197 1.11
 36544 36545 BSU00110 BSU00120 yaaD yaaE TRUE 0.997 22 296.093
 36545 36546 BSU00120 BSU00130 yaaE serS TRUE 0.501 322 -13.581
 36546 2209334 BSU00130 BSUt003 serS trnSL-Ser1 FALSE 0.075 135 0
 36547 36548 BSU00140 BSU00150 dck dgk TRUE 0.997 -3 34.425
 36548 36549 BSU00150 BSU00160 dgk yaaH FALSE 0.065 99 -5.172
 36549 36550 BSU00160 BSU00170 yaaH yaaI FALSE 0.109 70 -4.892
 36551 2209335 BSU00180 BSUs001 yaaJ scr FALSE 0.302 42 0
 2209335 36552 BSUs001 BSU00190 scr dnaX FALSE 0.127 82 0
 36552 36553 BSU00190 BSU00200 dnaX yaaK TRUE 0.995 24 178.284
 36553 36554 BSU00200 BSU00210 yaaK recR TRUE 0.998 15 1035.19
 36554 36555 BSU00210 BSU00220 recR yaaL TRUE 0.955 18 28.162
 36555 36556 BSU00220 BSU00230 yaaL bofA FALSE 0.459 67 11.706
 36556 2209336 BSU00230 BSUr004 bofA rrnA-16S FALSE 0.042 244 0
 2209336 2209337 BSUr004 BSUt004 rrnA-16S trnA-Ile FALSE 0.1 101 0
 2209337 2209338 BSUt004 BSUt005 trnA-Ile trnA-Ala FALSE 0.477 12 0
 2209338 2209339 BSUt005 BSUr005 trnA-Ala rrnA-23S FALSE 0.127 82 0
 2209339 2209340 BSUr005 BSUr006 rrnA-23S rrnA-5S FALSE 0.076 133 0
 2209340 36557 BSUr006 BSU00240 rrnA-5S csfB FALSE 0.055 183 0
 36557 36558 BSU00240 BSU00250 csfB xpaC FALSE 0.031 120 -1.778
 36558 36559 BSU00250 BSU00260 xpaC yaaN TRUE 0.958 19 22.209
 36559 36560 BSU00260 BSU00270 yaaN yaaO FALSE 0.069 82 -13.544
 36560 36561 BSU00270 BSU00280 yaaO tdk TRUE 0.907 -3 32.796
 36561 36562 BSU00280 BSU00290 tdk yaaQ TRUE 0.958 74 75.427
 36562 36563 BSU00290 BSU00300 yaaQ yaaR TRUE 0.95 13 5.384
 36563 36564 BSU00300 BSU00310 yaaR holB TRUE 0.916 12 4.775
 36564 36565 BSU00310 BSU00320 holB yaaT TRUE 0.996 3 115.723
 36565 36566 BSU00320 BSU00330 yaaT yabA TRUE 0.99 15 70.951
 36566 36567 BSU00330 BSU00340 yabA yabB TRUE 0.922 59 32.261
 36567 36568 BSU00340 BSU00350 yabB yazA TRUE 0.986 -13 108.703
 36568 36569 BSU00350 BSU00360 yazA yabC TRUE 0.986 -25 25.65
 36571 36572 BSU00380 BSU00390 metG yabD TRUE 0.976 79 192.796
 36572 36573 BSU00390 BSU00400 yabD yabE TRUE 0.682 156 17.215
 36573 36574 BSU00400 BSU00410 yabE rnmV TRUE 0.673 145 9.984
 36574 36575 BSU00410 BSU00420 rnmV ksgA TRUE 0.995 -7 134.187
 36575 36576 BSU00420 BSU00430 ksgA yabG TRUE 0.83 162 13.963
 36576 36577 BSU00430 BSU00440 yabG veg TRUE 0.567 211 30.305
 36577 36578 BSU00440 BSU00450 veg sspF FALSE 0.203 160 10.243
 36578 36579 BSU00450 BSU00460 sspF ispE FALSE 0.253 148 9.222
 36579 36580 BSU00460 BSU00470 ispE purR TRUE 0.953 56 38.035
 36580 36581 BSU00470 BSU00480 purR yabJ TRUE 0.893 -3 18.516
 36581 36582 BSU00480 BSU00490 yabJ spoVG FALSE 0.233 194 19.068
 36582 36583 BSU00490 BSU00500 spoVG gcaD FALSE 0.489 193 60.67
 36583 36584 BSU00500 BSU00510 gcaD prs TRUE 0.991 23 193.893
 36584 36585 BSU00510 BSU00520 prs ctc TRUE 0.976 85 557.923
 36585 36586 BSU00520 BSU00530 ctc spoVC TRUE 0.989 107 820.734
 36586 36587 BSU00530 BSU00540 spoVC yabK TRUE 0.537 60 13.675
 36587 36588 BSU00540 BSU00550 yabK mfd FALSE 0.457 70 13.444
 36588 36589 BSU00550 BSU00560 mfd spoVT TRUE 0.915 136 18.159
 36589 36590 BSU00560 BSU00570 spoVT yabM FALSE 0.195 182 13.456
 36590 36591 BSU00570 BSU00580 yabM yabN TRUE 0.877 -10 14.321
 36591 36592 BSU00580 BSU00590 yabN yabO TRUE 0.984 3 40.335
 36592 36593 BSU00590 BSU00600 yabO yabP TRUE 0.91 79 36.255
 36593 36594 BSU00600 BSU00610 yabP yabQ TRUE 0.981 -3 18.434
 36594 36595 BSU00610 BSU00620 yabQ divIC TRUE 0.783 18 13.164
 36595 36596 BSU00620 BSU00630 divIC yabR TRUE 0.904 81 49.492
 36596 2209341 BSU00630 BSUt006 yabR trnSL-Met1 FALSE 0.06 169 0
 2209341 2209342 BSUt006 BSUt007 trnSL-Met1 trnSL-Glu1 FALSE 0.487 10 0
 2209342 36597 BSUt007 BSU00640 trnSL-Glu1 spoIIE FALSE 0.05 197 0
 36597 36598 BSU00640 BSU00650 spoIIE yabS FALSE 0.284 85 4.606
 36598 36599 BSU00650 BSU00660 yabS yabT TRUE 0.966 -34 6.503
 36599 36600 BSU00660 BSU00670 yabT yacA TRUE 0.682 104 3.095
 36600 36601 BSU00670 BSU00680 yacA hprT TRUE 0.994 -3 136.155
 36601 36602 BSU00680 BSU00690 hprT ftsH TRUE 0.935 98 182.82
 36602 36603 BSU00690 BSU00700 ftsH yacB TRUE 0.873 195 6.713
 36603 36604 BSU00700 BSU00710 yacB hslO TRUE 0.502 86 12.82
 36604 36605 BSU00710 BSU00720 hslO yacD TRUE 0.785 47 1.161
 36605 36606 BSU00720 BSU00730 yacD cysK FALSE 0.487 76 -0.024
 36606 36607 BSU00730 BSU00740 cysK pabB FALSE 0.235 167 -9.087
 36607 36608 BSU00740 BSU00750 pabB pabA TRUE 0.999 14 304.415
 36608 36609 BSU00750 BSU00760 pabA pabC TRUE 0.997 0 14.56
 36609 36610 BSU00760 BSU00770 pabC sul TRUE 0.992 -18 10.891
 36610 36611 BSU00770 BSU00780 sul folB TRUE 0.998 -7 256.011
 36611 36612 BSU00780 BSU00790 folB folK TRUE 0.998 -3 245.71
 36612 36613 BSU00790 BSU00800 folK yazB TRUE 0.861 -48 10.438
 36613 36614 BSU00800 BSU00810 yazB yacF TRUE 0.748 24 9.588
 36614 36615 BSU00810 BSU00820 yacF lysS TRUE 0.977 92 27.158
 36615 2209344 BSU00820 BSUr007 lysS rrnJ-16S FALSE 0.036 310 0
 2209344 2209345 BSUr007 BSUr008 rrnJ-16S rrnJ-23S FALSE 0.061 166 0
 2209345 2209346 BSUr008 BSUr009 rrnJ-23S rrnJ-5S FALSE 0.234 56 0
 2209346 2209347 BSUr009 BSUt008 rrnJ-5S trnJ-Val FALSE 0.432 23 0
 2209347 2209348 BSUt008 BSUt009 trnJ-Val trnJ-Thr TRUE 0.517 5 0
 2209348 2209349 BSUt009 BSUt010 trnJ-Thr trnJ-Lys FALSE 0.33 37 0
 2209349 2209350 BSUt010 BSUt011 trnJ-Lys trnJ-Leu1 FALSE 0.5 7 0
 2209350 2209351 BSUt011 BSUt012 trnJ-Leu1 trnJ-Gly FALSE 0.326 38 0
 2209351 2209352 BSUt012 BSUt013 trnJ-Gly trnJ-Leu2 FALSE 0.479 15 0
 2209352 2209353 BSUt013 BSUt014 trnJ-Leu2 trnJ-Arg FALSE 0.5 7 0
 2209353 2209354 BSUt014 BSUt015 trnJ-Arg trnJ-Pro FALSE 0.392 28 0
 2209354 2209355 BSUt015 BSUt016 trnJ-Pro trnJ-Ala FALSE 0.487 10 0
 2209355 2209356 BSUt016 BSUr010 trnJ-Ala rrnW-16S FALSE 0.059 171 0
 2209356 2209357 BSUr010 BSUr011 rrnW-16S rrnW-23S FALSE 0.061 166 0
 2209357 2209358 BSUr011 BSUr012 rrnW-23S rrnW-5S FALSE 0.234 56 0
 2209358 36616 BSUr012 BSU00830 rrnW-5S ctsR FALSE 0.043 241 0
 36616 36617 BSU00830 BSU00840 ctsR mcsA TRUE 0.989 14 70.346
 36617 36618 BSU00840 BSU00850 mcsA mcsB TRUE 0.995 0 103.979
 36618 36619 BSU00850 BSU00860 mcsB clpC TRUE 0.994 -3 74.238
 36619 36620 BSU00860 BSU00870 clpC radA TRUE 0.955 92 69.985
 36620 36621 BSU00870 BSU00880 radA yacK TRUE 0.986 4 137.834
 36621 36622 BSU00880 BSU00890 yacK yacL TRUE 0.852 116 25.402
 36622 36623 BSU00890 BSU00900 yacL ispD TRUE 0.989 15 48.141
 36623 36624 BSU00900 BSU00910 ispD ispF TRUE 1 -7 752.16
 36624 36625 BSU00910 BSU00920 ispF gltX TRUE 0.933 91 4.008
 36625 36626 BSU00920 BSU00930 gltX cysE FALSE 0.306 302 38.906
 36626 36627 BSU00930 BSU00940 cysE cysS TRUE 0.995 -3 140.413
 36627 36628 BSU00940 BSU00950 cysS yazC TRUE 0.994 4 156.13
 36628 36629 BSU00950 BSU00960 yazC yacO TRUE 0.998 -16 112.723
 36629 36630 BSU00960 BSU00970 yacO yacP TRUE 0.991 7 129.104
 36630 36631 BSU00970 BSU00980 yacP sigH TRUE 0.944 63 50.85
 36631 36632 BSU00980 BSU00990 sigH rpmG FALSE 0.401 93 14.685
 36632 36633 BSU00990 BSU01000 rpmG secE TRUE 0.983 34 46.938
 36633 36634 BSU01000 BSU01010 secE nusG TRUE 0.94 179 276.521
 36634 36635 BSU01010 BSU01020 nusG rplK TRUE 0.967 168 1255.591
 36635 36636 BSU01020 BSU01030 rplK rplA TRUE 0.994 94 1611.923
 36636 36637 BSU01030 BSU01040 rplA rplJ TRUE 0.978 252 1190.063
 36637 36638 BSU01040 BSU01050 rplJ rplL TRUE 0.998 47 1556.263
 36638 36639 BSU01050 BSU01060 rplL ybxB TRUE 0.913 90 23.892
 36639 36640 BSU01060 BSU01070 ybxB rpoB FALSE 0.323 246 18.71
 36640 36641 BSU01070 BSU01080 rpoB rpoC TRUE 0.997 62 244.491
 36641 36642 BSU01080 BSU01090 rpoC ybxF TRUE 0.849 181 51.053
 36642 36643 BSU01090 BSU01100 ybxF rpsL TRUE 0.962 114 51.548
 36643 36644 BSU01100 BSU01110 rpsL rpsG TRUE 0.999 42 1531.353
 36644 36645 BSU01110 BSU01120 rpsG fusA TRUE 0.996 54 1326.135
 36645 36646 BSU01120 BSU01130 fusA tuf TRUE 0.995 120 617.864
 36646 36647 BSU01130 BSU01140 tuf ybaC FALSE 0.033 99 -7.831
 36647 36648 BSU01140 BSU01150 ybaC rpsJ FALSE 0.014 236 -7.773
 36648 36649 BSU01150 BSU01160 rpsJ rplC TRUE 0.998 40 1283.977
 36649 36650 BSU01160 BSU01170 rplC rplD TRUE 0.999 28 1442.372
 36650 36651 BSU01170 BSU01180 rplD rplW TRUE 0.999 0 1495.08
 36651 36652 BSU01180 BSU01190 rplW rplB TRUE 0.999 32 1487.692
 36652 36653 BSU01190 BSU01200 rplB rpsS TRUE 0.997 58 1511.763
 36653 36654 BSU01200 BSU01210 rpsS rplV TRUE 0.999 17 1384.671
 36654 36655 BSU01210 BSU01220 rplV rpsC TRUE 0.999 4 1365.643
 36655 36656 BSU01220 BSU01230 rpsC rplP TRUE 0.999 2 1486.919
 36656 36657 BSU01230 BSU01240 rplP rpmC TRUE 1 -10 1362.885
 36657 36658 BSU01240 BSU01250 rpmC rpsQ TRUE 0.999 23 1347.93
 36658 36659 BSU01250 BSU01260 rpsQ rplN TRUE 0.998 41 1386.789
 36659 36660 BSU01260 BSU01270 rplN rplX TRUE 0.998 38 1483.711
 36660 36661 BSU01270 BSU01280 rplX rplE TRUE 0.999 27 1498.67
 36661 36662 BSU01280 BSU01290 rplE rpsN TRUE 0.999 23 433.546
 36662 36663 BSU01290 BSU01300 rpsN rpsH TRUE 0.998 32 428.896
 36663 36664 BSU01300 BSU01310 rpsH rplF TRUE 0.999 30 1705.455
 36664 36665 BSU01310 BSU01320 rplF rplR TRUE 0.999 33 1642.666
 36665 36666 BSU01320 BSU01330 rplR rpsE TRUE 0.999 25 1468.095
 36666 36667 BSU01330 BSU01340 rpsE rpmD TRUE 0.999 14 1164.061
 36667 36668 BSU01340 BSU01350 rpmD rplO TRUE 0.999 31 1275.556
 36668 36669 BSU01350 BSU01360 rplO secY TRUE 0.998 2 1579.231
 36669 36670 BSU01360 BSU01370 secY adk TRUE 0.992 55 702.127
 36670 36671 BSU01370 BSU01380 adk map TRUE 0.993 -3 203.833
 36671 36672 BSU01380 BSU01390 map infA TRUE 0.881 312 172.216
 36672 36673 BSU01390 BSU01400 infA rpmJ TRUE 0.993 34 499.026
 36673 36674 BSU01400 BSU01410 rpmJ rpsM TRUE 0.998 23 874.291
 36674 36675 BSU01410 BSU01420 rpsM rpsK TRUE 0.999 21 1645.465
 36675 36676 BSU01420 BSU01430 rpsK rpoA TRUE 0.958 177 1580.109
 36676 36677 BSU01430 BSU01440 rpoA rplQ TRUE 0.988 78 1446.838
 36677 36678 BSU01440 BSU01450 rplQ ybxA TRUE 0.849 128 70.305
 36678 36679 BSU01450 BSU01460 ybxA ybaE TRUE 0.998 15 184.481
 36679 36680 BSU01460 BSU01470 ybaE ybaF TRUE 0.998 -3 208.431
 36680 36681 BSU01470 BSU01480 ybaF truA TRUE 0.995 10 70.711
 36681 36682 BSU01480 BSU01490 truA rplM TRUE 0.963 163 159.853
 36682 36683 BSU01490 BSU01500 rplM rpsI TRUE 0.999 21 1569.305
 36683 36684 BSU01500 BSU01510 rpsI ybaJ FALSE 0.014 464 -4.441
 36684 36685 BSU01510 BSU01520 ybaJ ybaK FALSE 0.018 186 -3.673
 36685 36686 BSU01520 BSU01530 ybaK cwlD TRUE 0.526 60 12.272
 36686 36687 BSU01530 BSU01540 cwlD ybaL FALSE 0.327 96 12.034
 2209359 2209360 BSUr013 BSUr014 rrnI-16S rrnI-23S FALSE 0.061 166 0
 2209360 2209361 BSUr014 BSUr015 rrnI-23S rrnI-5S FALSE 0.234 56 0
 2209361 2209362 BSUr015 BSUt017 rrnI-5S trnI-Asn FALSE 0.269 48 0
 2209362 2209363 BSUt017 BSUt018 trnI-Asn trnI-Thr TRUE 0.541 2 0
 2209363 2209364 BSUt018 BSUt019 trnI-Thr trnI-Gly FALSE 0.245 54 0
 2209364 2209365 BSUt019 BSUt020 trnI-Gly trnI-Arg FALSE 0.371 31 0
 2209365 2209366 BSUt020 BSUt021 trnI-Arg trnI-Pro FALSE 0.392 28 0
 2209366 2209367 BSUt021 BSUt022 trnI-Pro trnI-Ala FALSE 0.491 9 0
 2209367 2209368 BSUt022 BSUr016 trnI-Ala rrnH-16S FALSE 0.059 171 0
 2209368 2209369