VIMSS Operon Predictions for Borrelia burgdorferi B31

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 43644 43645 BB0002 BB0003 TRUE 0.853 -12 0.005
 43647 43648 BB0005 BB0006 TRUE 0.822 -3 -17.325
 43648 43649 BB0006 BB0007 FALSE 0.279 25 -0.143
 43650 43651 BB0008 BB0009 TRUE 0.983 5 20.001
 43651 43652 BB0009 BB0010 TRUE 0.972 -3 4.215
 43652 43653 BB0010 BB0011 TRUE 0.978 4 2.154
 43653 43654 BB0011 BB0012 TRUE 0.983 1 10.079
 43654 43655 BB0012 BB0013 TRUE 0.77 -7 0.005
 43655 43656 BB0013 BB0014 TRUE 0.77 -7 0.005
 43657 43658 BB0015 BB0016 FALSE 0.442 -3 -2.61
 43660 43661 BB0018 BB0019 TRUE 0.755 -25 0.005
 43661 43662 BB0019 BB0020 TRUE 0.751 8 0.005
 43662 43663 BB0020 BB0021 FALSE 0.031 466 0
 43663 43664 BB0021 BB0022 TRUE 0.971 -34 2.526
 43664 43665 BB0022 BB0023 TRUE 0.97 45 242.833
 43667 43668 BB0025 BB0026 TRUE 0.667 1 -26.023
 43669 43670 BB0027 BB0028 TRUE 0.751 8 0.005
 43671 43672 BB0029 BB0030 FALSE 0.457 -10 -0.289
 43672 43673 BB0030 BB0031 TRUE 0.954 2 0.005
 43674 43675 BB0032 BB0033 TRUE 0.595 12 0.005
 43676 43677 BB0034 BB0035 FALSE 0.253 68 0.005
 43677 43678 BB0035 BB0036 TRUE 0.994 0 11.397
 43678 43679 BB0036 BB0037 FALSE 0.474 21 -0.016
 43679 43680 BB0037 BB0038 TRUE 0.799 -3 0.005
 43680 43681 BB0038 BB0039 TRUE 0.587 13 0.005
 43682 43683 BB0040 BB0041 TRUE 0.784 0 0
 43684 43685 BB0042 BB0043 TRUE 0.617 11 0.005
 43685 43686 BB0043 BB0044 TRUE 0.799 -3 0.005
 43686 43687 BB0044 BB0045 TRUE 0.569 26 0.005
 43689 43690 BB0047 BB0048 FALSE 0.045 207 0
 43690 43691 BB0048 BB0049 FALSE 0.072 150 0
 43692 43693 BB0050 BB0051 FALSE 0.274 64 0.005
 43696 43697 BB0054 BB0055 TRUE 0.99 1 55.413
 43697 43698 BB0055 BB0056 TRUE 0.995 2 418.65
 43698 43699 BB0056 BB0057 TRUE 0.991 20 612.658
 43699 43700 BB0057 BB0058 FALSE 0.133 73 -0.203
 43700 43701 BB0058 BB0059 TRUE 0.973 -3 4.658
 43701 43702 BB0059 BB0060 TRUE 0.99 1 152.928
 43702 43703 BB0060 BB0061 FALSE 0.103 84 -0.353
 43705 43706 BB0063 BB0064 TRUE 0.771 65 2.009
 43706 43707 BB0064 BB0065 TRUE 0.995 -3 1139.154
 43707 43708 BB0065 BB0066 TRUE 0.597 14 0.005
 43708 43709 BB0066 BB0067 TRUE 0.799 -3 0.005
 43710 43711 BB0068 BB0069 FALSE 0.469 10 -4.02
 43711 43712 BB0069 BB0070 FALSE 0.246 15 -2.226
 43712 43713 BB0070 BB0071 TRUE 0.604 16 0.005
 43713 43714 BB0071 BB0072 TRUE 0.751 8 0.005
 43714 43715 BB0072 BB0073 TRUE 0.799 -3 0.005
 43715 43716 BB0073 BB0074 FALSE 0.367 47 0.005
 43716 43717 BB0074 BB0075 TRUE 0.753 -18 0.005
 43717 43718 BB0075 BB0076 FALSE 0.464 37 0.005
 43718 43719 BB0076 BB0077 TRUE 0.799 -3 0.005
 43719 43720 BB0077 BB0078 TRUE 0.79 1 0
 43720 43721 BB0078 BB0079 FALSE 0.171 71 0
 43721 43722 BB0079 BB0080 TRUE 0.759 -40 0
 43722 43723 BB0080 BB0081 TRUE 0.985 -3 45.581
 43724 43725 BB0082 BB0083 TRUE 0.77 -7 0.005
 43726 43727 BB0084 BB0085 FALSE 0.477 210 39.662
 43727 43728 BB0085 BB0086 TRUE 0.506 -3 -0.278
 43729 43730 BB0087 BB0088 FALSE 0.177 121 -18.929
 43730 43731 BB0088 BB0089 FALSE 0.097 160 0.005
 43731 43732 BB0089 BB0090 FALSE 0.235 72 0.005
 43732 43733 BB0090 BB0091 TRUE 0.968 17 2.518
 43733 43734 BB0091 BB0092 TRUE 0.993 -3 51.431
 43734 43735 BB0092 BB0093 TRUE 0.995 -3 147.468
 43735 43736 BB0093 BB0094 TRUE 0.989 22 203.127
 43736 43737 BB0094 BB0095 FALSE 0.182 86 0.005
 43737 43738 BB0095 BB0096 TRUE 0.678 10 0.005
 43738 43739 BB0096 BB0097 FALSE 0.079 184 0.005
 43739 43740 BB0097 BB0098 TRUE 0.811 6 0.005
 43740 43741 BB0098 BB0099 TRUE 0.827 -10 -4.631
 43741 43742 BB0099 BB0100 TRUE 0.859 -3 -2.72
 43743 43744 BB0101 BB0102 TRUE 0.61 23 0.005
 43745 43746 BB0103 BB0104 FALSE 0.019 186 -1.543
 43746 43747 BB0104 BB0105 TRUE 0.681 40 -4.351
 43747 43748 BB0105 BB0106 TRUE 0.89 -7 0.005
 43748 43749 BB0106 BB0107 TRUE 0.821 -55 0.005
 43749 43750 BB0107 BB0108 FALSE 0.308 29 -4.506
 43750 43751 BB0108 BB0109 FALSE 0.09 80 -3.471
 43753 43754 BB0111 BB0112 TRUE 0.995 4 818.723
 43754 43755 BB0112 BB0113 TRUE 0.985 18 283.634
 43755 43756 BB0113 BB0114 TRUE 0.953 14 17.427
 43756 43757 BB0114 BB0115 TRUE 0.944 12 5.835
 43757 43758 BB0115 BB0116 FALSE 0.146 140 0.005
 43760 43761 BB0118 BB0119 cdsA TRUE 0.985 7 90.265
 43761 43762 BB0119 BB0120 cdsA TRUE 0.99 -85 372.181
 43762 43763 BB0120 BB0121 TRUE 0.994 5 1033.31
 43763 43764 BB0121 BB0122 TRUE 0.976 35 833.205
 43764 43765 BB0122 BB0123 TRUE 0.997 4 1566.693
 43765 43766 BB0123 BB0124 FALSE 0.064 215 0.005
 43766 43767 BB0124 BB0125 TRUE 0.62 19 0.005
 43767 43768 BB0125 BB0126 FALSE 0.293 57 0.005
 43768 43769 BB0126 BB0127 TRUE 0.848 0 0.005
 43769 43770 BB0127 BB0128 TRUE 0.993 -3 893.096
 43770 43771 BB0128 BB0129 TRUE 0.965 -16 0.415
 43771 43772 BB0129 BB0130 TRUE 0.757 -13 0.005
 43772 43773 BB0130 BB0131 TRUE 0.606 15 0.005
 43773 43774 BB0131 BB0132 FALSE 0.407 14 -1.167
 43774 43775 BB0132 BB0133 TRUE 0.882 38 2.145
 43779 43780 BB0137 BB0138 FALSE 0.095 114 0
 43780 43781 BB0138 BB0139 FALSE 0.027 345 0
 43781 43782 BB0139 BB0140 TRUE 0.558 27 0.005
 43782 43783 BB0140 BB0141 TRUE 0.942 19 8.231
 43783 43784 BB0141 BB0142 TRUE 0.966 9 3.144
 43786 43787 BB0144 BB0145 TRUE 0.981 13 136.615
 43787 43788 BB0145 BB0146 TRUE 0.987 7 57.099
 43788 43789 BB0146 BB0147 FALSE 0.046 154 -1.493
 43791 43792 BB0149 BB0150 TRUE 0.521 22 0
 43793 43794 BB0151 BB0152 TRUE 0.987 27 321.746
 43795 43796 BB0153 BB0154 FALSE 0.499 -18 -21.353
 43797 43798 BB0155 BB0156 TRUE 0.533 29 0.005
 43798 43799 BB0156 BB0157 TRUE 0.799 -3 0.005
 43799 43800 BB0157 BB0158 FALSE 0.101 154 0.005
 43800 43801 BB0158 BB0159 TRUE 0.591 24 0.005
 43801 43802 BB0159 BB0160 FALSE 0.36 48 0.005
 43805 43806 BB0163 BB0164 FALSE 0.196 81 0.005
 43806 43807 BB0164 BB0165 TRUE 0.852 1 0.005
 43807 43808 BB0165 BB0166 FALSE 0.132 120 0.005
 43812 43813 BB0170 BB0171 TRUE 0.905 -51 0.005
 43813 43814 BB0171 BB0172 TRUE 0.958 -18 2.145
 43814 43815 BB0172 BB0173 TRUE 0.979 -57 44.066
 43815 43816 BB0173 BB0174 TRUE 0.764 -37 0.005
 43816 43817 BB0174 BB0175 TRUE 0.85 4 0.005
 43817 43818 BB0175 BB0176 TRUE 0.97 15 265.555
 43818 43819 BB0176 BB0177 FALSE 0.286 36 -2.084
 43819 43820 BB0177 BB0178 TRUE 0.992 -3 499.094
 43820 43821 BB0178 BB0179 TRUE 0.989 -15 525.679
 43822 43823 BB0180 BB0181 TRUE 0.595 12 0.005
 43823 43824 BB0181 BB0182 TRUE 0.997 3 177.312
 43824 43825 BB0182 BB0183 TRUE 0.986 2 24.242
 43825 43826 BB0183 BB0184 TRUE 0.989 3 79.548
 43827 43828 BB0185 BB0186 TRUE 0.977 -7 31.391
 43828 43829 BB0186 BB0187 TRUE 0.973 -3 4.658
 43829 43830 BB0187 BB0188 FALSE 0.019 214 -0.203
 43830 43831 BB0188 BB0189 TRUE 0.992 21 1668.237
 43831 43832 BB0189 BB0190 TRUE 0.986 23 1058.603
 43833 43834 BB0191 BB0192 TRUE 0.522 20 0
 43834 43835 BB0192 BB0193 TRUE 0.527 2 0.003
 43836 43837 BB0194 BB0195 TRUE 0.83 -3 -1.134
 43838 43839 BB0196 BB0197 TRUE 0.996 3 636.693
 43839 43840 BB0197 BB0198 TRUE 0.589 -43 -1.294
 43840 43841 BB0198 BB0199 TRUE 0.762 -10 0.005
 43842 43843 BB0200 BB0201 TRUE 0.863 17 -21.007
 401901 43844 BB_t01 BB0202 tRNA-Cys-1 FALSE 0.13 85 0
 43844 43845 BB0202 BB0203 FALSE 0.095 49 -4.974
 43845 43846 BB0203 BB0204 TRUE 0.997 1 367.379
 43846 401903 BB0204 BB_t02 tRNA-Phe-2 FALSE 0.025 384 0
 401903 43847 BB_t02 BB0205 tRNA-Phe-2 FALSE 0.427 29 0
 43849 43850 BB0207 BB0208 TRUE 0.757 -13 0.005
 43850 43851 BB0208 BB0209 TRUE 0.558 27 0.005
 43851 43852 BB0209 BB0210 TRUE 0.906 -7 0.005
 43852 43853 BB0210 BB0211 TRUE 0.824 7 0.005
 43853 43854 BB0211 BB0212 TRUE 0.62 19 0.005
 43855 43856 BB0213 BB0214 TRUE 0.752 -22 0.005
 43857 43858 BB0215 BB0216 TRUE 0.872 90 383.964
 43858 43859 BB0216 BB0217 TRUE 0.642 555 190.311
 43859 43860 BB0217 BB0218 TRUE 0.997 1 155.87
 43861 43862 BB0219 BB0220 FALSE 0.281 41 -0.04
 43862 43863 BB0220 BB0221 TRUE 0.884 0 0.005
 43863 43864 BB0221 BB0222 TRUE 0.801 -22 0.005
 43864 43865 BB0222 BB0223 TRUE 0.525 21 0
 43865 43866 BB0223 BB0224 TRUE 0.674 -31 0
 43869 43870 BB0227 BB0228 TRUE 0.604 16 0.005
 43871 43872 BB0229 BB0230 TRUE 0.894 61 163.788
 43872 43873 BB0230 BB0231 TRUE 0.661 80 2.243
 43873 43874 BB0231 BB0232 TRUE 0.884 1 -0.261
 43874 43875 BB0232 BB0233 FALSE 0.387 13 -0.887
 43875 43876 BB0233 BB0234 TRUE 0.736 9 0.005
 43876 43877 BB0234 BB0235 TRUE 0.604 16 0.005
 43877 43878 BB0235 BB0236 FALSE 0.32 33 -0.42
 43880 43881 BB0238 BB0239 FALSE 0.376 46 0.005
 43882 43883 BB0240 BB0241 TRUE 0.955 43 646.825
 43883 43884 BB0241 BB0242 FALSE 0.076 54 0.003
 43884 43885 BB0242 BB0243 FALSE 0.055 72 0.003
 43886 43887 BB0244 BB0245 TRUE 0.757 -13 0.005
 43887 43888 BB0245 BB0246 TRUE 0.852 1 0.005
 43889 43890 BB0247 BB0248 FALSE 0.051 120 -10.21
 43890 43891 BB0248 BB0249 FALSE 0.372 14 -3.314
 43891 43892 BB0249 BB0250 FALSE 0.445 -3 -3.28
 43892 43893 BB0250 BB0251 FALSE 0.076 203 -11.192
 43893 43894 BB0251 BB0252 FALSE 0.233 15 -3.799
 43896 43897 BB0254 BB0255 TRUE 0.801 -19 0.005
 43897 43898 BB0255 BB0256 FALSE 0.461 15 -0.022
 43899 43900 BB0257 BB0258 TRUE 0.977 -3 4.458
 43900 43901 BB0258 BB0259 FALSE 0.312 15 -0.119
 43901 43902 BB0259 BB0260 TRUE 0.773 -67 0.005
 43906 43907 BB0264 BB0265 TRUE 0.758 -28 0.005
 43907 43908 BB0265 BB0266 TRUE 0.626 20 0.005
 43908 43909 BB0266 BB0267 TRUE 0.629 21 0.005
 43909 43910 BB0267 BB0268