VIMSS Operon Predictions for Buchnera aphidicola str. Bp

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 323529 323530 bbp001 bbp002 gidA atpB FALSE 0.22 319 -41.95
 323530 323531 bbp002 bbp003 atpB atpE TRUE 0.997 53 1064.918
 323531 323532 bbp003 bbp004 atpE atpF TRUE 0.975 125 900.96
 323532 323533 bbp004 bbp005 atpF atpH TRUE 0.999 13 908.004
 323533 323534 bbp005 bbp006 atpH atpA TRUE 1 14 1196.116
 323534 323535 bbp006 bbp007 atpA atpG TRUE 0.999 38 1843.072
 323535 323536 bbp007 bbp008 atpG atpD TRUE 1 28 1616.656
 323536 323537 bbp008 bbp009 atpD atpC TRUE 1 2 961.883
 323538 323539 bbp010 bbp011 gyrB dnaN TRUE 0.662 183 280.972
 323539 323540 bbp011 bbp012 dnaN dnaA TRUE 1 5 984.462
 323541 323542 bbp013 bbp014 rpmH rnpA TRUE 0.997 21 428.236
 323542 323543 bbp014 bbp015 rnpA yidD TRUE 0.994 -21 165.409
 323543 323544 bbp015 bbp016 yidD yidC TRUE 0.992 3 185.825
 323544 323545 bbp016 bbp017 yidC thdF TRUE 0.866 159 446.335
 323545 323546 bbp017 bbp018 thdF mutH FALSE 0.04 50 -17.467
 323547 323548 bbp020 bbp021 mopB mopA TRUE 0.999 51 1539.549
 323551 323552 bbp024 bbp025 dnaC yhhF FALSE 0.005 225 -9.832
 323553 323554 bbp026 bbp027 ftsY rpoH FALSE 0.056 160 -5.712
 323555 323556 bbp028 bbp029 glmS glmU TRUE 0.962 86 481.249
 323557 323558 bbp030 bbp031 yigL metE FALSE 0.005 194 -30.594
 323559 323560 bbp032 bbp033 purH hupA FALSE 0.214 73 -40.325
 323560 323561 bbp033 bbp034 hupA rpoC FALSE 0.132 407 -40.763
 323561 323562 bbp034 bbp035 rpoC rpoB TRUE 0.99 89 1085.308
 323562 323563 bbp035 bbp036 rpoB rplL TRUE 0.956 228 1037.454
 323563 323564 bbp036 bbp037 rplL rplJ TRUE 0.996 74 1436.094
 323564 323565 bbp037 bbp038 rplJ rplA TRUE 0.964 282 1102.061
 323565 323566 bbp038 bbp039 rplA rplK TRUE 1 -3 1828.677
 323566 323567 bbp039 bbp040 rplK nusG TRUE 0.98 215 1421.129
 323567 323568 bbp040 bbp041 nusG secE TRUE 0.996 5 333.158
 323568 401963 bbp041 bbp042 secE tRNA-Thr FALSE 0.073 387 0
 401963 401962 bbp042 bbp043 tRNA-Thr tRNA-Gly TRUE 0.792 13 0
 401962 401961 bbp043 bbp044 tRNA-Gly tRNA-Tyr FALSE 0.478 39 0
 401961 401960 bbp044 bbp045 tRNA-Tyr tRNA-Thr TRUE 0.667 26 0
 401960 323569 bbp045 bbp046 tRNA-Thr murB FALSE 0.073 374 0
 323570 323571 bbp047 bbp048 metF argG FALSE 0.106 300 -39.916
 323571 323572 bbp048 bbp049 argG argH TRUE 0.948 114 535.558
 323572 323573 bbp049 bbp050 argH yibN FALSE 0.005 184 -18.098
 323573 323574 bbp050 bbp051 yibN cysE FALSE 0.05 248 -26.519
 323575 323576 bbp052 bbp053 rpoD dnaG TRUE 0.803 238 268.294
 323576 323577 bbp053 bbp054 dnaG rpsU TRUE 0.749 107 199.119
 323581 323582 bbp058 bbp059 bacA crr FALSE 0.006 126 -16.962
 323582 323583 bbp059 bbp060 crr ptsI TRUE 0.993 9 148.18
 323583 323584 bbp060 bbp061 ptsI ptsH TRUE 0.946 175 690.232
 401959 401958 bbp063 bbp064 tRNA-Lys tRNA-Val TRUE 0.81 11 0
 323586 401933 bbp065 bbp066 gltX tRNA-Ala FALSE 0.227 74 0
 323588 323589 bbp068 bbp069 fliF fliG TRUE 0.999 5 629.474
 323589 323590 bbp069 bbp070 fliG fliH TRUE 0.943 31 27.574
 323590 323591 bbp070 bbp071 fliH fliI TRUE 0.978 -3 28.932
 323591 323592 bbp071 bbp072 fliI fliJ TRUE 0.759 17 0
 323592 323593 bbp072 bbp073 fliJ fliK TRUE 0.842 -7 0
 323593 323594 bbp073 bbp074 fliK fliM FALSE 0.074 144 0
 323594 323595 bbp074 bbp075 fliM fliN TRUE 0.977 -7 41.368
 323595 323596 bbp075 bbp076 fliN fliOP TRUE 0.663 62 0.032
 323596 323597 bbp076 bbp077 fliOP fliQ TRUE 0.61 84 0.032
 323597 323598 bbp077 bbp078 fliQ fliR TRUE 0.999 0 728.702
 323599 323600 bbp079 bbp080 rpmG rpmB TRUE 0.985 42 534.228
 2209655 323604 bbp084 bbp085 rnpB yraL FALSE 0.3 57 0
 323605 323606 bbp086 bbp087 fabB talA FALSE 0.006 624 -21.164
 323606 323607 bbp087 bbp088 talA tktB TRUE 0.586 98 37.415
 323607 323608 bbp088 bbp089 tktB dapE FALSE 0.005 167 -27.18
 323609 323610 bbp090 bbp091 dapA aroC FALSE 0.105 483 -42.732
 323611 323612 bbp092 bbp093 yb2331 hisG FALSE 0.006 490 -16.824
 323612 323613 bbp093 bbp094 hisG hisD TRUE 0.998 6 380.084
 323613 323614 bbp094 bbp095 hisD hisC TRUE 0.999 2 701.523
 323614 323615 bbp095 bbp096 hisC hisB TRUE 0.996 2 254.747
 323615 323616 bbp096 bbp097 hisB hisH TRUE 0.996 1 263.755
 323616 323617 bbp097 bbp098 hisH hisA TRUE 1 4 1247.424
 323617 323618 bbp098 bbp099 hisA hisF TRUE 1 -6 1145.293
 323618 323619 bbp099 bbp100 hisF hisI TRUE 0.999 -6 494.106
 323619 323620 bbp100 bbp101 hisI gnd FALSE 0.082 154 2.139
 323620 323621 bbp101 bbp102 gnd dcd FALSE 0.005 305 -23.105
 323621 323622 bbp102 bbp103 dcd metG FALSE 0.078 102 -38.91
 323623 401957 bbp104 bbp105 mesJ tRNA-Val FALSE 0.257 68 0
 401957 323624 bbp105 bbp106 tRNA-Val norM FALSE 0.138 95 0
 323625 323626 bbp107 bbp108 ribE rnfA FALSE 0.005 299 -23.436
 323626 323627 bbp108 bbp109 rnfA rnfB TRUE 0.995 12 221.494
 323627 323628 bbp109 bbp110 rnfB rnfC TRUE 0.981 18 46.632
 323628 323629 bbp110 bbp111 rnfC rnfD TRUE 0.734 168 152.767
 323629 323630 bbp111 bbp112 rnfD rnfG TRUE 0.998 -16 286.377
 323630 323631 bbp112 bbp113 rnfG ydgQ TRUE 0.998 -7 287.545
 323631 323632 bbp113 bbp114 ydgQ nth TRUE 0.993 -37 191.909
 323632 323633 bbp114 bbp115 nth tyrS FALSE 0.036 289 -38.745
 323635 323636 bbp117 bbp118 yb1688 aroH FALSE 0.006 536 -25.802
 323636 323637 bbp118 bbp119 aroH thrS FALSE 0.005 176 -29.239
 323637 323638 bbp119 bbp120 thrS infC TRUE 0.999 4 697.112
 323638 323639 bbp120 bbp121 infC rpmI TRUE 0.996 46 1042.43
 323639 323640 bbp121 bbp122 rpmI rplT TRUE 0.999 43 1742.094
 323640 323641 bbp122 bbp123 rplT pheS TRUE 0.94 173 727.86
 323641 323642 bbp123 bbp124 pheS pheT TRUE 1 15 1490.134
 323642 323643 bbp124 bbp125 pheT yajC FALSE 0.005 212 -33.097
 323644 323645 bbp126 bbp127 glyS glyQ TRUE 0.997 46 1058.907
 323646 323647 bbp128 bbp129 nfo rplY FALSE 0.006 126 -15.923
 323649 323650 bbp131 bbp132 ksgA apaH FALSE 0.463 116 255.098
 323651 323652 bbp133 bbp134 folA carB FALSE 0.014 85 -27.558
 323652 323653 bbp134 bbp135 carB carA TRUE 1 9 1120.747
 323653 323654 bbp135 bbp136 carA dapB TRUE 0.567 139 192.919
 323654 323655 bbp136 bbp137 dapB lytB FALSE 0.005 295 -0.509
 323655 323656 bbp137 bbp138 lytB lspA FALSE 0.465 56 1.287
 323656 323657 bbp138 bbp139 lspA ileS TRUE 0.999 0 673.038
 323659 323660 bbp141 bbp142 dnaJ dnaK TRUE 0.988 122 1340.148
 323661 323662 bbp143 bbp144 nuoA nuoB TRUE 0.98 26 122.166
 323662 323663 bbp144 bbp145 nuoB nuoCD TRUE 0.785 105 134.802
 323663 323664 bbp145 bbp146 nuoCD nuoE TRUE 0.994 -13 150.903
 323664 323665 bbp146 bbp147 nuoE nuoF TRUE 0.998 -3 336.183
 323665 323666 bbp147 bbp148 nuoF nuoG TRUE 0.83 129 235.345
 323666 323667 bbp148 bbp149 nuoG nuoH TRUE 0.997 -3 255.722
 323667 323668 bbp149 bbp150 nuoH nuoI TRUE 0.996 23 399.386
 323668 323669 bbp150 bbp151 nuoI nuoJ TRUE 0.996 11 270.211
 323669 323670 bbp151 bbp152 nuoJ nuoK TRUE 0.994 58 803.662
 323670 323671 bbp152 bbp153 nuoK nuoL TRUE 0.999 -3 633.627
 323671 323672 bbp153 bbp154 nuoL nuoM TRUE 0.971 111 688.656
 323672 323673 bbp154 bbp155 nuoM nuoN TRUE 0.999 22 911.613
 323673 323674 bbp155 bbp156 nuoN ygjT FALSE 0.012 91 -13.312
 323674 323675 bbp156 bbp157 ygjT folC FALSE 0.016 83 -18.34
 323675 323676 bbp157 bbp158 folC cvpA TRUE 0.914 41 316.982
 323677 2209656 bbp159 bbp160 prsA ispE FALSE 0.163 86 0
 323678 323679 bbp161 bbp162 prfA hemK TRUE 1 -3 1241.814
 323679 323680 bbp162 bbp163 hemK ychA FALSE 0.193 175 127.349
 323680 323681 bbp163 bbp164 ychA ackA FALSE 0.006 517 -15.325
 323681 323682 bbp164 bbp165 ackA pta TRUE 0.966 54 267.526
 323683 323684 bbp166 bbp167 yfaE nrdB TRUE 0.981 1 66.801
 323684 323685 bbp167 bbp168 nrdB nrdA TRUE 0.99 65 640.265
 323685 323686 bbp168 bbp169 nrdA gyrA FALSE 0.032 275 -38.365
 323694 323695 bbp178 bbp179 sodA pth FALSE 0.011 96 -31.005
 323695 323696 bbp179 bbp180 pth ychF TRUE 0.985 45 422.849
 323697 323698 bbp181 bbp182 thrC thrB TRUE 0.997 1 276.634
 323698 323699 bbp182 bbp183 thrB thrA TRUE 0.99 20 229.211
 323699 323700 bbp183 bbp184 thrA dksA FALSE 0.006 718 -27.834
 323701 323702 bbp185 bbp186 truA mrcB FALSE 0.005 249 -25.144
 323702 323703 bbp186 bbp187 mrcB secA FALSE 0.006 477 -26.107
 323703 323704 bbp187 bbp188 secA guaC FALSE 0.006 919 -25.93
 323704 323705 bbp188 bbp189 guaC aceE FALSE 0.006 410 -18.465
 323705 323706 bbp189 bbp190 aceE aceF TRUE 0.995 11 343.156
 323706 323707 bbp190 bbp191 aceF lpdA TRUE 0.805 148 350.538
 323708 323709 bbp192 bbp193 pfs yadR FALSE 0.061 39 -29.681
 323709 323710 bbp193 bbp194 yadR ftsZ FALSE 0.009 106 -31.467
 323710 323711 bbp194 bbp195 ftsZ ftsA TRUE 0.998 33 909.608
 323711 323712 bbp195 bbp196 ftsA ddlB TRUE 0.755 402 724.366
 323712 323713 bbp196 bbp197 ddlB murC TRUE 0.998 2 537.293
 323713 323714 bbp197 bbp198 murC murG TRUE 0.998 38 1131.727
 323714 323715 bbp198 bbp199 murG ftsW TRUE 0.999 -3 908.634
 323715 323716 bbp199 bbp200 ftsW murD TRUE 0.992 55 853.108
 323716 323717 bbp200 bbp201 murD mraY TRUE 1 -3 1358.135
 323717 323718 bbp201 bbp202 mraY murF TRUE 0.996 67 1184.992
 323718 323719 bbp202 bbp203 murF murE TRUE 1 -13 1011.626
 323719 323720 bbp203 bbp204 murE ftsI TRUE 0.998 41 1033.682
 323720 323721 bbp204 bbp205 ftsI ftsL TRUE 0.564 83 30.562
 323721 323722 bbp205 bbp206 ftsL yabC TRUE 0.971 -7 35.976
 323722 323723 bbp206 bbp207 yabC ilvH FALSE 0.011 94 -33.33
 323723 323724 bbp207 bbp208 ilvH ilvI TRUE 1 -3 1193.037
 323724 323725 bbp208 bbp209 ilvI apbE FALSE 0.005 291 -21.303
 323727 323728 bbp211 bbp212 dapD map FALSE 0.017 78 -20.377
 323729 323730 bbp213 bbp214 rpsB tsf TRUE 0.993 87 1449.225
 323730 323731 bbp214 bbp215 tsf pyrH TRUE 0.966 147 978.98
 323731 323732 bbp215 bbp216 pyrH frr TRUE 0.985 137 1655.749
 323732 2209657 bbp216 bbp217 frr dxr TRUE 0.647 27 0
 2209657 323733 bbp217 bbp218 dxr uppS FALSE 0.343 53 0
 323733 323734 bbp218 bbp219 uppS fabZ FALSE 0.131 406 -47.046
 323734 323735 bbp219 bbp220 fabZ dnaE FALSE 0.143 289 -41.686
 323737 323738 bbp222 bbp223 flhB flhA TRUE 0.999 -7 548.189
 407993 401934 bbp225 bbp226 rrs tRNA-Ile FALSE 0.142 93 0
 401934 401935 bbp226 bbp227 tRNA-Ile tRNA-Ala FALSE 0.391 48 0
 323740 323741 bbp228 bbp229 gloB rnhA TRUE 0.817 54 340.789
 323742 401936 bbp230 bbp231 dnaQ tRNA-Asp FALSE 0.157 87 0
 401936 323743 bbp231 bbp232 tRNA-Asp gpt FALSE 0.071 268 0
 323743 323744 bbp232 bbp233 gpt grpE1 FALSE 0.007 125 -17.401
 323746 323747 bbp235 bbp236 smpB yfhC FALSE 0.039 68 -39.116
 323748 323749 bbp237 bbp238 acpS era TRUE 0.954 -3 -15.137
 323749 323750 bbp238 bbp239 era rnc TRUE 0.999 -3 676.884
 323750 323751 bbp239 bbp240 rnc lepB TRUE 0.959 101 614.551
 323751 323752 bbp240 bbp241 lepB lepA TRUE 0.992 36 496.676
 323753 323754 bbp242 bbp243 trmU ycfC TRUE 0.927 73 236.867
 323754 323755 bbp243 bbp244 ycfC purB TRUE 0.954 42 212.517
 323755 323756 bbp244 bbp245 purB mltE FALSE 0.008 112 -5.025
 323756 323757 bbp245 bbp246 mltE fabI FALSE 0.036 53 -5.402
 323757 323758 bbp246 bbp247 fabI rnb FALSE 0.179 108 17.765
 323758 323759 bbp247 bbp248 rnb ychE FALSE 0.005 273 -17.563
 323759 323760 bbp248 bbp249 ychE lipB FALSE 0.006 144 -18.898
 323760 323761 bbp249 bbp250 lipB lipA TRUE 0.87 132 337.829
 323764 323765 bbp253 bbp254 cls yciA FALSE 0.119 213 -26.085
 323765 323766 bbp254 bbp255 yciA ispZ TRUE 0.848 56 109.134
 323766 323767 bbp255 bbp256 ispZ yciC TRUE 0.935 24 31.817
 323767 323768 bbp256 bbp257 yciC trpA FALSE 0.006 137 -16.373
 323768 323769 bbp257 bbp258 trpA trpB TRUE 1 5 1299.644
 323769 323770 bbp258 bbp259 trpB trpC TRUE 0.994 0 167.161
 323770 323771 bbp259 bbp260 trpC trpD T