VIMSS Operon Predictions for Bacteroides thetaiotaomicron VPI-5482

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 349529 349530 BT0001 BT0002 TRUE 0.629 73 0
 349530 349531 BT0002 BT0003 TRUE 0.558 94 0
 349531 349532 BT0003 BT0004 FALSE 0.377 135 0
 349532 349533 BT0004 BT0005 TRUE 0.893 9 0
 349533 349534 BT0005 BT0006 TRUE 0.564 92 0
 349536 349537 BT0008 BT0009 FALSE 0.408 129 0
 349537 349538 BT0009 BT0010 TRUE 0.674 55 0
 349538 349539 BT0010 BT0011 FALSE 0.117 206 0
 349539 349540 BT0011 BT0012 TRUE 0.654 60 0
 349540 349541 BT0012 BT0013 TRUE 0.783 32 0
 349541 349542 BT0013 BT0014 FALSE 0.226 170 0
 349542 349543 BT0014 BT0015 TRUE 0.997 -28 0
 349543 349544 BT0015 BT0016 FALSE 0.16 188 0
 349544 349545 BT0016 BT0017 TRUE 0.585 113 0.364
 349545 349546 BT0017 BT0018 FALSE 0.241 183 0.364
 349546 349547 BT0018 BT0019 TRUE 0.907 12 0.364
 349547 349548 BT0019 BT0020 TRUE 0.906 7 0
 349551 349552 BT0023 BT0024 TRUE 0.887 10 0
 349552 349553 BT0024 BT0025 TRUE 0.807 25 0
 349553 349554 BT0025 BT0026 FALSE 0.051 262 0
 349554 349555 BT0026 BT0027 FALSE 0.165 186 0
 349556 349557 BT0028 BT0029 TRUE 0.566 76 0
 349557 349558 BT0029 BT0030 TRUE 0.95 13 1.901
 349558 349559 BT0030 BT0031 FALSE 0.45 120 0
 349559 349560 BT0031 BT0032 TRUE 0.837 14 0
 349560 349561 BT0032 BT0033 FALSE 0.044 274 0
 349561 349562 BT0033 BT0034 FALSE 0.03 311 0
 349564 349565 BT0036 BT0037 FALSE 0.01 561 0
 349565 349566 BT0037 BT0038 FALSE 0.432 124 0
 349566 349567 BT0038 BT0039 FALSE 0.039 286 0
 349567 349568 BT0039 BT0040 TRUE 0.651 61 0
 349568 349569 BT0040 BT0041 TRUE 0.947 -3 0
 349569 349570 BT0041 BT0042 TRUE 0.957 -3 0
 349570 349571 BT0042 BT0043 TRUE 0.788 31 0
 349571 349572 BT0043 BT0044 TRUE 0.879 11 0
 349572 349573 BT0044 BT0045 TRUE 0.957 -3 0
 349573 349574 BT0045 BT0046 TRUE 0.809 24 0
 349574 349575 BT0046 BT0047 TRUE 0.829 15 0
 349575 349576 BT0047 BT0048 TRUE 0.55 96 0
 349576 349577 BT0048 BT0049 TRUE 0.893 9 0
 349577 349578 BT0049 BT0050 TRUE 0.866 12 0
 349578 349579 BT0050 BT0051 TRUE 0.947 0 0
 349579 349580 BT0051 BT0052 FALSE 0.221 171 0
 349580 349581 BT0052 BT0053 TRUE 0.947 0 0
 349581 349582 BT0053 BT0054 TRUE 0.955 53 -0.015
 349582 349583 BT0054 BT0055 TRUE 0.99 8 0
 349583 349584 BT0055 BT0056 TRUE 0.911 21 -0.016
 349584 349585 BT0056 BT0057 TRUE 0.967 -10 0
 349585 349586 BT0057 BT0058 TRUE 0.631 72 0
 349586 349587 BT0058 BT0059 TRUE 0.957 -3 0
 349587 349588 BT0059 BT0060 TRUE 0.745 39 0
 349588 349589 BT0060 BT0061 TRUE 0.949 16 1.981
 349589 349590 BT0061 BT0062 TRUE 0.957 -3 0
 349590 349591 BT0062 BT0063 TRUE 0.684 53 0
 349591 349592 BT0063 BT0064 TRUE 0.808 21 0
 349592 349593 BT0064 BT0065 TRUE 0.635 70 0
 349593 349594 BT0065 BT0066 FALSE 0.417 115 0
 349594 349595 BT0066 BT0067 FALSE 0.024 338 0
 349595 349596 BT0067 BT0068 TRUE 0.798 28 0
 349597 349598 BT0069 BT0070 TRUE 0.939 48 3.638
 349598 349599 BT0070 BT0071 FALSE 0.032 304 0
 349599 349600 BT0071 BT0072 FALSE 0.093 218 0
 349600 349601 BT0072 BT0073 TRUE 0.962 -15 0
 349601 349602 BT0073 BT0074 TRUE 0.966 -9 0
 349603 349604 BT0075 BT0076 FALSE 0.013 461 0
 349604 349605 BT0076 BT0077 TRUE 0.762 77 0.646
 349605 349606 BT0077 BT0078 FALSE 0.078 259 0.364
 349606 349607 BT0078 BT0079 FALSE 0.022 299 0.364
 349607 349608 BT0079 BT0080 TRUE 0.797 44 0.364
 349608 349609 BT0080 BT0081 TRUE 0.807 25 0
 349610 349611 BT0082 BT0083 TRUE 0.627 74 0
 349611 349612 BT0083 BT0084 TRUE 0.521 104 0
 349612 349613 BT0084 BT0085 TRUE 0.938 22 3.209
 349613 349614 BT0085 BT0086 TRUE 0.971 3 0.734
 349614 349615 BT0086 BT0087 TRUE 0.887 34 0.734
 349615 349616 BT0087 BT0088 TRUE 0.988 -25 0.734
 349616 349617 BT0088 BT0089 TRUE 0.968 4 0.734
 349617 349618 BT0089 BT0090 TRUE 0.969 13 2.71
 349618 349619 BT0090 BT0091 TRUE 0.624 19 -0.809
 349619 349620 BT0091 BT0092 TRUE 0.946 5 0.364
 349620 349621 BT0092 BT0093 TRUE 0.854 29 0.364
 349621 349622 BT0093 BT0094 TRUE 0.897 -3 -0.809
 349622 349623 BT0094 BT0095 TRUE 0.937 12 0.734
 349623 349624 BT0095 BT0096 FALSE 0.11 165 -0.809
 349624 349625 BT0096 BT0097 TRUE 0.973 2 0.734
 349625 349626 BT0097 BT0098 TRUE 0.959 5 0.646
 349627 349628 BT0099 BT0100 TRUE 0.808 20 0
 349628 349629 BT0100 BT0101 TRUE 0.994 -15 2.622
 349629 349630 BT0101 BT0102 TRUE 0.968 21 3.209
 349630 349631 BT0102 BT0103 FALSE 0.359 174 -2.597
 349631 349632 BT0103 BT0104 TRUE 0.957 -3 0
 349632 349633 BT0104 BT0105 TRUE 0.957 -3 0
 349634 349635 BT0106 BT0107 FALSE 0.004 450 -0.809
 349635 349636 BT0107 BT0108 FALSE 0.437 56 -0.809
 349636 349637 BT0108 BT0109 TRUE 0.988 -37 0.734
 349637 349638 BT0109 BT0110 FALSE 0.044 211 -0.816
 349638 349639 BT0110 BT0111 FALSE 0.231 168 0
 349639 349640 BT0111 BT0112 TRUE 0.972 -22 0
 349640 349641 BT0112 BT0113 TRUE 0.803 26 0
 349641 349642 BT0113 BT0114 TRUE 0.935 3 0
 349642 349643 BT0114 BT0115 TRUE 0.992 13 257.073
 349643 349644 BT0115 BT0116 TRUE 0.993 5 13.798
 349644 349645 BT0116 BT0117 TRUE 0.982 28 37.956
 349645 349646 BT0117 BT0118 TRUE 0.73 34 0
 349646 349647 BT0118 BT0119 TRUE 0.941 2 0
 349647 349648 BT0119 BT0120 TRUE 0.879 11 0
 349648 349649 BT0120 BT0121 TRUE 0.928 78 11.486
 402033 349650 BT0122 tRNA-Ser FALSE 0.199 175 0
 349651 349652 BT0123 BT0124 TRUE 0.996 19 -0.708
 349652 349653 BT0124 BT0125 TRUE 0.999 12 48.237
 349654 349655 BT0126 BT0127 FALSE 0.324 145 0
 349655 349656 BT0127 BT0128 FALSE 0.17 184 0
 349657 349658 BT0129 BT0130 TRUE 0.973 13 12.762
 349659 349660 BT0131 BT0132 FALSE 0.068 240 0
 349661 349662 BT0133 BT0134 TRUE 0.647 11 -2.76
 349662 349663 BT0134 BT0135 TRUE 0.999 -22 66.343
 349664 349665 BT0136 BT0137 TRUE 0.515 105 0
 349665 349666 BT0137 BT0138 FALSE 0.087 222 0
 349666 349667 BT0138 BT0139 FALSE 0.003 748 0
 349667 349668 BT0139 BT0140 TRUE 0.521 71 0
 349668 349669 BT0140 BT0141 TRUE 0.879 11 0
 349669 349670 BT0141 BT0142 TRUE 0.791 30 0
 349670 349671 BT0142 BT0143 TRUE 0.887 10 0
 349671 349672 BT0143 BT0144 FALSE 0.12 205 0
 349672 349673 BT0144 BT0145 FALSE 0.451 161 0
 349673 349674 BT0145 BT0146 TRUE 0.816 61 0
 349675 349676 BT0147 BT0148 TRUE 0.793 75 0.734
 349676 349677 BT0148 BT0149 FALSE 0.116 218 -0.703
 349677 349678 BT0149 BT0150 TRUE 0.829 39 0.734
 349679 349680 BT0151 BT0152 TRUE 0.903 27 0.734
 349681 349682 BT0153 BT0154 TRUE 0.724 7 -2.36
 349684 349685 BT0156 BT0157 TRUE 0.763 86 0.734
 349685 349686 BT0157 BT0158 TRUE 0.803 68 0.734
 349686 349687 BT0158 BT0159 TRUE 0.715 95 0.689
 349687 349688 BT0159 BT0160 FALSE 0.392 122 0.734
 349688 349689 BT0160 BT0161 TRUE 0.83 48 0.691
 349689 349690 BT0161 BT0162 TRUE 0.838 20 0.143
 349690 349691 BT0162 BT0163 TRUE 0.715 46 0
 349691 349692 BT0163 BT0164 TRUE 0.898 8 0
 349693 349694 BT0165 BT0166 TRUE 0.824 16 0
 349695 349696 BT0167 BT0168 TRUE 0.997 -7 10.853
 349696 349697 BT0168 BT0169 FALSE 0.093 218 0
 349697 349698 BT0169 BT0170 FALSE 0.183 120 -2.36
 349698 349699 BT0170 BT0171 FALSE 0.07 172 -2.36
 349699 349700 BT0171 BT0172 FALSE 0.473 115 0
 349700 349701 BT0172 BT0173 FALSE 0.006 1026 0
 349701 349702 BT0173 BT0174 TRUE 0.991 20 75.269
 349703 349704 BT0175 BT0176 FALSE 0.006 773 0.734
 349704 349705 BT0176 BT0177 TRUE 0.709 77 0.364
 349705 349706 BT0177 BT0178 TRUE 0.858 27 0.364
 349706 349707 BT0178 BT0179 TRUE 0.939 10 0.636
 349707 349708 BT0179 BT0180 TRUE 0.526 90 -1.159
 349708 349709 BT0180 BT0181 TRUE 0.96 13 0.521
 349709 349710 BT0181 BT0182 FALSE 0.125 194 -1.533
 349711 349712 BT0183 BT0184 TRUE 0.79 18 -0.837
 349713 349714 BT0185 BT0186 TRUE 0.936 10 0.424
 349716 349717 BT0188 BT0189 TRUE 0.525 88 0
 349717 349718 BT0189 BT0190 FALSE 0.104 213 0
 349718 349719 BT0190 BT0191 TRUE 0.809 24 0
 349719 349720 BT0191 BT0192 TRUE 0.798 28 0
 349720 349721 BT0192 BT0193 TRUE 0.906 7 0
 349721 349722 BT0193 BT0194 TRUE 0.941 2 0
 349722 349723 BT0194 BT0195 TRUE 0.77 21 0
 349723 349724 BT0195 BT0196 TRUE 0.965 13 2.864
 349724 349725 BT0196 BT0197 FALSE 0.053 259 0
 349725 349726 BT0197 BT0198 FALSE 0.031 310 0
 349726 349727 BT0198 BT0199 FALSE 0.31 76 -2.36
 349727 349728 BT0199 BT0200 FALSE 0.08 254 0.673
 349728 349729 BT0200 BT0201 TRUE 1 10 578.392
 349729 349730 BT0201 BT0202 TRUE 1 -3 960.094
 349730 349731 BT0202 BT0203 TRUE 1 4 462.722
 349731 349732 BT0203 BT0204 FALSE 0.452 91 0
 349734 349735 BT0206 BT0207 TRUE 0.971 19 4.377
 349735 349736 BT0207 BT0208 TRUE 0.816 18 0
 349736 349737 BT0208 BT0209 TRUE 0.816 18 0
 349737 349738 BT0209 BT0210 TRUE 0.715 46 0
 349738 349739 BT0210 BT0211 TRUE 0.816 18 0
 349739 349740 BT0211 BT0212 TRUE 0.694 51 0
 349740 349741 BT0212 BT0213 TRUE 0.849 13 0
 349741 349742 BT0213 BT0214 TRUE 0.809 22 0
 349742 349743 BT0214 BT0215 FALSE 0.158 189 0
 349743 349744 BT0215 BT0216 TRUE 0.85 23 0.562
 349744 349745 BT0216 BT0217 TRUE 0.843 132 0.446
 349746 349747 BT0218 BT0219 TRUE 0.993 15 0.734
 349747 349748 BT0219 BT0220 FALSE 0.039 286 0
 349749 349750 BT0221 BT0222 TRUE 0.811 19 0
 349750 349751 BT0222 BT0223 TRUE 0.826 71 0
 349752 349753 BT0224 BT0225 TRUE 0.731 42 0
 349753 349754 BT0225 BT0226 TRUE 0.809 23