VIMSS Operon Predictions for Bacillus cereus ATCC 14579

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 357448 357449 BC0001 BC0002 TRUE 0.962 179 908.247
 357449 357450 BC0002 BC0003 TRUE 0.911 128 54.307
 357450 357451 BC0003 BC0004 TRUE 0.992 13 64.784
 357451 357452 BC0004 BC0005 TRUE 0.997 33 172.648
 357452 357453 BC0005 BC0006 TRUE 0.994 86 218.968
 357453 2209879 BC0006 BC0007 FALSE 0.024 242 0
 2209879 402104 BC0007 BC0008 tRNA-Ile FALSE 0.074 171 0
 402104 402105 BC0008 BC0009 tRNA-Ile tRNA-Ala TRUE 0.627 9 0
 402105 2209880 BC0009 BC0010 tRNA-Ala FALSE 0.228 78 0
 2209880 2209881 BC0010 BC0011 FALSE 0.054 191 0
 357455 357456 BC0013 BC0014 FALSE 0.258 105 -7.081
 357456 357457 BC0014 BC0015 FALSE 0.149 155 -6.428
 357457 357458 BC0015 BC0016 TRUE 0.996 19 268.728
 357458 357459 BC0016 BC0017 FALSE 0.162 328 -25.532
 357459 2209882 BC0017 BC0018 FALSE 0.091 158 0
 2209882 357460 BC0018 BC0019 TRUE 0.636 8 0
 357461 357462 BC0021 BC0022 FALSE 0.218 126 -3.979
 357463 357464 BC0023 BC0024 FALSE 0.103 477 -0.617
 357464 357465 BC0024 BC0025 TRUE 0.992 23 112.658
 357465 357466 BC0025 BC0026 TRUE 0.995 15 1008.496
 357466 357467 BC0026 BC0027 TRUE 0.972 15 16.741
 357467 357468 BC0027 BC0028 FALSE 0.348 162 5.89
 357468 2209883 BC0028 BC0029 FALSE 0.034 219 0
 2209883 402107 BC0029 BC0030 tRNA-Ile FALSE 0.074 171 0
 402107 402108 BC0030 BC0031 tRNA-Ile tRNA-Ala TRUE 0.627 9 0
 402108 2209884 BC0031 BC0032 tRNA-Ala FALSE 0.228 78 0
 2209884 2209885 BC0032 BC0033 FALSE 0.054 191 0
 2209885 357469 BC0033 BC0034 FALSE 0.053 192 0
 357469 357470 BC0034 BC0035 FALSE 0.218 72 -0.068
 357470 357471 BC0035 BC0036 TRUE 0.993 2 23.662
 357471 357472 BC0036 BC0037 TRUE 0.995 36 191.176
 357472 357473 BC0037 BC0038 TRUE 0.994 6 79.842
 357473 357474 BC0038 BC0039 TRUE 0.992 9 53.903
 357474 357475 BC0039 BC0040 TRUE 0.918 83 18.98
 357475 357476 BC0040 BC0041 TRUE 0.64 246 36.517
 357478 357479 BC0043 BC0044 TRUE 0.912 170 236.456
 357479 357480 BC0044 BC0045 TRUE 0.852 203 75.554
 357480 357481 BC0045 BC0046 TRUE 0.998 -3 108.335
 357481 357482 BC0046 BC0047 TRUE 0.902 111 4.628
 357482 357483 BC0047 BC0048 FALSE 0.38 227 18.858
 357483 357484 BC0048 BC0049 TRUE 0.547 92 4.11
 357484 357485 BC0049 BC0050 FALSE 0.264 197 3.309
 357485 357486 BC0050 BC0051 TRUE 0.97 55 26.014
 357486 357487 BC0051 BC0052 TRUE 0.606 121 6.009
 357487 357488 BC0052 BC0053 FALSE 0.486 153 9.341
 357488 357489 BC0053 BC0054 FALSE 0.234 314 48.437
 357489 357490 BC0054 BC0055 TRUE 0.989 19 162.889
 357490 357491 BC0055 BC0056 TRUE 0.981 1 478.111
 357491 357492 BC0056 BC0057 TRUE 0.635 71 4.749
 357492 357493 BC0057 BC0058 TRUE 0.526 106 4.435
 357493 357494 BC0058 BC0059 TRUE 0.926 137 9.451
 357494 357495 BC0059 BC0060 FALSE 0.135 231 5.108
 357495 357496 BC0060 BC0061 TRUE 0.91 13 6.809
 357496 357497 BC0061 BC0062 TRUE 0.983 15 31.141
 357497 357498 BC0062 BC0063 TRUE 0.953 59 27.782
 357498 357499 BC0063 BC0064 TRUE 0.968 15 7.578
 357499 357500 BC0064 BC0065 TRUE 0.962 -3 5.681
 357500 357501 BC0065 BC0066 TRUE 0.748 88 18.074
 357501 402109 BC0066 BC0067 tRNA-Met FALSE 0.089 160 0
 402109 402110 BC0067 BC0068 tRNA-Met tRNA-Glu TRUE 0.542 14 0
 402110 357502 BC0068 BC0069 tRNA-Glu FALSE 0.016 284 0
 357502 357503 BC0069 BC0070 FALSE 0.358 231 15.221
 357503 357504 BC0070 BC0071 TRUE 0.998 -3 127.928
 357504 357505 BC0071 BC0072 TRUE 0.961 86 149.634
 357505 357506 BC0072 BC0073 TRUE 0.661 245 -5.403
 357506 357507 BC0073 BC0074 TRUE 0.953 7 4.703
 357507 357508 BC0074 BC0075 TRUE 0.622 114 -8.996
 357508 357509 BC0075 BC0076 FALSE 0.213 223 -9.245
 357509 357510 BC0076 BC0077 TRUE 0.999 6 188.033
 357510 357511 BC0077 BC0078 TRUE 0.998 -6 7.164
 357511 357512 BC0078 BC0079 TRUE 0.999 -25 7.691
 357512 357513 BC0079 BC0080 TRUE 0.999 1 223.473
 357513 357514 BC0080 BC0081 TRUE 0.999 -3 190.319
 357514 357515 BC0081 BC0082 TRUE 0.99 -48 4.575
 357515 357516 BC0082 BC0083 TRUE 0.874 24 3.761
 357516 357517 BC0083 BC0084 TRUE 0.959 160 5.746
 357517 2209886 BC0084 BC0085 FALSE 0.008 374 0
 2209886 2209887 BC0085 BC0086 FALSE 0.062 183 0
 2209887 402111 BC0086 BC0087 tRNA-Val FALSE 0.008 364 0
 402111 402112 BC0087 BC0088 tRNA-Val tRNA-Thr TRUE 0.672 5 0
 402112 402113 BC0088 BC0089 tRNA-Thr tRNA-Lys TRUE 0.542 14 0
 402113 402114 BC0089 BC0090 tRNA-Lys tRNA-Leu TRUE 0.542 14 0
 402114 402115 BC0090 BC0091 tRNA-Leu tRNA-Gly FALSE 0.449 30 0
 402115 402116 BC0091 BC0092 tRNA-Gly tRNA-Leu FALSE 0.494 17 0
 402116 402117 BC0092 BC0093 tRNA-Leu tRNA-Arg TRUE 0.692 4 0
 402117 402118 BC0093 BC0094 tRNA-Arg tRNA-Pro TRUE 0.627 9 0
 402118 402119 BC0094 BC0095 tRNA-Pro tRNA-Ala TRUE 0.618 10 0
 402119 2209888 BC0095 BC0096 tRNA-Ala FALSE 0.237 76 0
 2209888 2209889 BC0096 BC0097 FALSE 0.062 183 0
 2209889 2209890 BC0097 BC0098 FALSE 0.055 190 0
 2209890 357518 BC0098 BC0099 FALSE 0.041 210 0
 357518 357519 BC0099 BC0100 TRUE 0.864 168 57.165
 357519 357520 BC0100 BC0101 TRUE 0.995 5 79.166
 357520 357521 BC0101 BC0102 TRUE 0.99 23 56.097
 357521 357522 BC0102 BC0103 TRUE 0.956 96 39.207
 357522 357523 BC0103 BC0104 TRUE 0.992 4 123.468
 357523 357524 BC0104 BC0105 TRUE 0.806 161 15.749
 357524 357525 BC0105 BC0106 TRUE 0.981 17 33.379
 357525 357526 BC0106 BC0107 TRUE 0.994 117 675.671
 357526 357527 BC0107 BC0108 TRUE 0.942 57 -13.644
 357527 357528 BC0108 BC0109 FALSE 0.073 445 23.517
 357528 357529 BC0109 BC0110 TRUE 0.999 -19 118.088
 357529 357530 BC0110 BC0111 TRUE 0.996 3 133.367
 357530 357531 BC0111 BC0112 TRUE 0.999 -3 89.464
 357531 357532 BC0112 BC0113 TRUE 0.994 4 108.436
 357532 357533 BC0113 BC0114 TRUE 0.949 68 39.296
 357533 357534 BC0114 BC0115 FALSE 0.135 315 13.07
 357534 357535 BC0115 BC0116 TRUE 0.958 132 317.164
 357535 357536 BC0116 BC0117 TRUE 0.939 168 1162.197
 357536 357537 BC0117 BC0118 TRUE 0.979 171 1458.258
 357537 357538 BC0118 BC0119 TRUE 0.934 234 1113.458
 357538 357539 BC0119 BC0120 TRUE 0.996 68 1485.07
 357539 357540 BC0120 BC0121 TRUE 0.968 77 10.571
 357540 357541 BC0121 BC0122 FALSE 0.15 291 7.249
 357541 357542 BC0122 BC0123 TRUE 0.998 38 261.031
 357542 357543 BC0123 BC0124 TRUE 0.939 99 29.24
 357543 357544 BC0124 BC0125 TRUE 0.963 115 35.601
 357544 357545 BC0125 BC0126 TRUE 0.999 30 1461.213
 357545 357546 BC0126 BC0128 TRUE 0.939 209 1271.322
 357546 357547 BC0128 BC0129 TRUE 0.994 118 585.262
 357547 357548 BC0129 BC0130 TRUE 0.663 399 492.84
 357548 357549 BC0130 BC0131 TRUE 0.998 35 1244.257
 357549 357550 BC0131 BC0132 TRUE 0.998 26 1382.035
 357550 357551 BC0132 BC0133 TRUE 1 0 1418.701
 357551 357552 BC0133 BC0134 TRUE 0.998 29 1389.449
 357552 357553 BC0134 BC0135 TRUE 0.996 61 1431.323
 357553 357554 BC0135 BC0136 TRUE 0.999 0 1296.097
 357554 357555 BC0136 BC0137 TRUE 0.999 4 1281.732
 357555 357556 BC0137 BC0138 TRUE 0.999 2 1413.338
 357556 357557 BC0138 BC0139 TRUE 0.999 0 1013.154
 357557 357558 BC0139 BC0140 TRUE 0.998 21 1035.05
 357558 357559 BC0140 BC0141 TRUE 0.997 44 1305.508
 357559 357560 BC0141 BC0142 TRUE 0.998 39 1424.257
 357560 357561 BC0142 BC0143 TRUE 0.998 27 1431.413
 357561 357562 BC0143 BC0144 TRUE 0.997 34 416.631
 357562 357563 BC0144 BC0145 TRUE 0.997 30 412.782
 357563 357564 BC0145 BC0146 TRUE 0.998 33 1613.613
 357564 357565 BC0146 BC0147 TRUE 0.998 32 1565.218
 357565 357566 BC0147 BC0148 TRUE 0.998 19 1358.188
 357566 357567 BC0148 BC0149 TRUE 0.999 14 1145.501
 357567 357568 BC0149 BC0150 TRUE 0.999 34 1252.681
 357568 357569 BC0150 BC0152 FALSE 0.107 1359 -130.973
 357569 357570 BC0152 BC0153 TRUE 0.996 0 179.073
 357570 357571 BC0153 BC0154 TRUE 0.983 69 162.732
 357571 357572 BC0154 BC0155 TRUE 0.989 36 458.355
 357572 357573 BC0155 BC0156 TRUE 0.996 22 815.236
 357573 357574 BC0156 BC0157 TRUE 0.998 25 1541.069
 357574 357575 BC0157 BC0158 TRUE 0.915 181 1501.158
 357575 357576 BC0158 BC0159 TRUE 0.993 36 1372.509
 357576 357577 BC0159 BC0160 TRUE 0.829 104 56.011
 357577 357578 BC0160 BC0161 TRUE 1 -24 169.983
 357578 357579 BC0161 BC0162 TRUE 1 -12 187.915
 357579 357580 BC0162 BC0163 TRUE 0.998 0 41.792
 357580 357581 BC0163 BC0164 TRUE 0.965 153 96.489
 357581 357582 BC0164 BC0165 TRUE 0.998 22 1493.012
 357582 357583 BC0165 BC0166 FALSE 0.04 163 -1.967
 357583 357584 BC0166 BC0167 TRUE 0.668 67 5.561
 357584 357585 BC0167 BC0168 FALSE 0.43 145 4.097
 357589 2209891 BC0172 BC0173 FALSE 0.032 224 0
 2209891 2209892 BC0173 BC0174 FALSE 0.062 183 0
 2209892 402120 BC0174 BC0175 tRNA-Asn FALSE 0.009 358 0
 402120 402121 BC0175 BC0176 tRNA-Asn tRNA-Thr TRUE 0.672 5 0
 402121 402122 BC0176 BC0177 tRNA-Thr tRNA-Glu FALSE 0.478 25 0
 402122 402123 BC0177 BC0178 tRNA-Glu tRNA-Val TRUE 0.656 6 0
 402123 402124 BC0178 BC0179 tRNA-Val tRNA-Tyr FALSE 0.494 18 0
 402124 402125 BC0179 BC0180 tRNA-Tyr tRNA-Gln FALSE 0.274 66 0
 402125 402126 BC0180 BC0181 tRNA-Gln tRNA-Lys TRUE 0.656 6 0
 402126 402127 BC0181 BC0182 tRNA-Lys tRNA-Gly TRUE 0.656 6 0
 402127 402128 BC0182 BC0183 tRNA-Gly tRNA-Ala TRUE 0.608 11 0
 402128 357590 BC0183 BC0184 tRNA-Ala FALSE 0.149 118 0
 357590 357591 BC0184 BC0185 FALSE 0.047 211 -20.326
 357591 357592 BC0185 BC0186 FALSE 0.089 249 1.455
 357592 357593 BC0186 BC0187 TRUE 0.998 -7 45.213
 357593 357594 BC0187 BC0188 TRUE 0.997 -7 15.051
 357594 357595 BC0188 BC0189 FALSE 0.02 268 0.23
 357595 357596 BC0189 BC0190 TRUE 0.594 13 0.23
 357598 357599 BC0192 BC0193 FALSE 0.147 108 -0.306
 357602 357603 BC0196 BC0197 TRUE 0.999 -25 96.311
 357603 357604 BC0197 BC0198 TRUE 0.99 13 139.482
 357604 357605 BC0198 BC0199 FALSE 0.02 281 -0.031
 357606 357607 BC0200 BC0201 FALSE 0.334 88 0.392
 357607 357608 BC0201 BC0202 TRUE 0.794 36 2.508
 357608 357609 BC0202 BC0203 FALSE 0.088 70 0.418
 357609 357610 BC0203 BC0204 FALSE 0.115 127 -0.349
 357610 357611 BC0204 BC0205 FALSE 0.001 754 0.465
 357613 357614 BC0207 BC0208 TRUE 0.992 17 16.5
 357614 357615 BC0208 BC0209 TRUE 0.994 -43 0.509
 357615 357616 BC0209 BC0210