VIMSS Operon Predictions for Acidovorax sp. JS42

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 2214395 2214396 Ajs_0001 Ajs_0002 FALSE 0.123 128 -0.465
 2214396 2214397 Ajs_0002 Ajs_0003 FALSE 0.03 227 -0.117
 2214400 2214401 Ajs_0006 Ajs_0007 FALSE 0.488 141 0.621
 2214406 2214407 Ajs_0012 Ajs_0013 FALSE 0.01 477 -0.199
 2214408 2214409 Ajs_0014 Ajs_0015 TRUE 0.693 -3 -0.102
 2214409 2214410 Ajs_0015 Ajs_0016 TRUE 0.961 13 18.668
 2214410 2214411 Ajs_0016 Ajs_0017 FALSE 0.344 112 -0.283
 2214411 2214412 Ajs_0017 Ajs_0018 FALSE 0.055 -3 -1.109
 2214413 2214414 Ajs_0019 Ajs_0020 FALSE 0.021 184 -0.57
 2214415 2214416 Ajs_0021 Ajs_0022 FALSE 0.282 151 0
 2214416 2214417 Ajs_0022 Ajs_0023 FALSE 0.001 266 -15.995
 2214417 2214418 Ajs_0023 Ajs_0024 FALSE 0.194 134 -4.783
 2214418 2214419 Ajs_0024 Ajs_0025 TRUE 0.776 -3 -0.425
 2214420 2214421 Ajs_0026 Ajs_0027 TRUE 0.974 -3 653.271
 2214421 2214422 Ajs_0027 Ajs_0028 FALSE 0.075 35 -13.158
 2214422 2214423 Ajs_0028 Ajs_0029 FALSE 0.186 17 -10.311
 2214423 2214424 Ajs_0029 Ajs_0030 FALSE 0.476 87 -6.497
 2214424 2214425 Ajs_0030 Ajs_0031 TRUE 0.509 7 -6.546
 2214425 2214426 Ajs_0031 Ajs_0032 TRUE 0.685 26 -6.466
 2214426 2214427 Ajs_0032 Ajs_0033 FALSE 0.213 161 0.332
 2214428 2214429 Ajs_0034 Ajs_0035 TRUE 0.6 107 6.29
 2214431 2214432 Ajs_0037 Ajs_0038 TRUE 0.803 122 -1.648
 2214434 2214435 Ajs_0040 Ajs_0041 FALSE 0.29 138 0
 2214435 2214436 Ajs_0041 Ajs_0042 FALSE 0.06 247 0
 2214442 2214443 Ajs_0048 Ajs_0049 FALSE 0.036 203 -4.037
 2214443 2214444 Ajs_0049 Ajs_0050 TRUE 0.512 -121 -0.487
 2214444 2214445 Ajs_0050 Ajs_0051 FALSE 0.493 80 0
 2214445 2214446 Ajs_0051 Ajs_0052 FALSE 0.471 88 0
 2214447 2214448 Ajs_0053 Ajs_0054 TRUE 0.569 114 0.176
 2214450 2214451 Ajs_0056 Ajs_0057 FALSE 0.483 -3 -2.047
 2214451 2214452 Ajs_0057 Ajs_0058 TRUE 0.919 -3 -1.486
 2214452 2214453 Ajs_0058 Ajs_0059 TRUE 0.808 -3 4.139
 2214453 2214454 Ajs_0059 Ajs_0060 TRUE 0.679 68 4.152
 2214454 2214455 Ajs_0060 Ajs_0061 TRUE 0.946 23 0.63
 2214455 2214456 Ajs_0061 Ajs_0062 TRUE 0.986 15 60.281
 2214456 2214457 Ajs_0062 Ajs_0063 TRUE 0.677 110 3.41
 2214457 2214458 Ajs_0063 Ajs_0064 TRUE 0.729 58 -1.205
 2214458 2214459 Ajs_0064 Ajs_0065 FALSE 0.005 232 -3.365
 2214459 2214460 Ajs_0065 Ajs_0066 TRUE 0.981 52 396.127
 2214460 2214461 Ajs_0066 Ajs_0067 TRUE 0.977 6 583.915
 2214463 2214464 Ajs_0069 Ajs_0070 FALSE 0.147 139 -0.64
 2214466 2214467 Ajs_0072 Ajs_0073 TRUE 0.732 71 -3.486
 2214468 2214469 Ajs_0074 Ajs_0075 TRUE 0.532 120 1.175
 2214469 2214470 Ajs_0075 Ajs_0076 TRUE 0.777 17 -1.619
 2214472 2214473 Ajs_0078 Ajs_0079 FALSE 0.036 335 0
 2214473 2214474 Ajs_0079 Ajs_0080 TRUE 0.797 36 0
 2214474 2214475 Ajs_0080 Ajs_0081 FALSE 0.014 111 -14.206
 2214475 2214476 Ajs_0081 Ajs_0082 FALSE 0.148 153 -1.825
 2214476 2214477 Ajs_0082 Ajs_0083 FALSE 0.472 48 -1.825
 2214479 2214480 Ajs_0085 Ajs_0086 TRUE 0.921 -10 7.891
 2214480 2214481 Ajs_0086 Ajs_0087 TRUE 0.75 82 8.827
 2214481 2214482 Ajs_0087 Ajs_0088 FALSE 0.005 296 -0.746
 2214482 2214483 Ajs_0088 Ajs_0089 FALSE 0.015 352 0
 2214485 2214486 Ajs_0091 Ajs_0092 FALSE 0.331 75 -0.746
 2214487 2214488 Ajs_0093 Ajs_0094 FALSE 0.308 145 0
 2214488 2214489 Ajs_0094 Ajs_0095 FALSE 0.299 83 -1.825
 2214489 2214490 Ajs_0095 Ajs_0096 TRUE 0.69 60 -10.603
 2214490 2214491 Ajs_0096 Ajs_0097 FALSE 0.068 180 -1.245
 2214491 2214492 Ajs_0097 Ajs_0098 TRUE 0.771 47 0.446
 2214492 2214493 Ajs_0098 Ajs_0099 TRUE 0.929 28 2.603
 2214493 2214494 Ajs_0099 Ajs_0100 FALSE 0.1 163 -0.385
 2214495 2214496 Ajs_0101 Ajs_0102 FALSE 0.16 240 0
 2214496 2214497 Ajs_0102 Ajs_0103 FALSE 0.44 45 -0.858
 2214497 2214498 Ajs_0103 Ajs_0104 TRUE 0.644 79 -2.483
 2214499 2214500 Ajs_0105 Ajs_0106 TRUE 0.77 66 17.739
 2214500 2214501 Ajs_0106 Ajs_0107 FALSE 0.245 187 9.559
 2214501 2214502 Ajs_0107 Ajs_0108 TRUE 0.604 100 2.114
 2214502 2214503 Ajs_0108 Ajs_0109 TRUE 0.694 13 -0.412
 2214503 2214504 Ajs_0109 Ajs_0110 FALSE 0.244 -3 -0.599
 2214504 2214505 Ajs_0110 Ajs_0111 FALSE 0.242 41 -0.505
 2214505 2214506 Ajs_0111 Ajs_0112 TRUE 0.729 44 0.032
 2214507 2214508 Ajs_0113 Ajs_0114 TRUE 0.644 83 -1.788
 2214508 2214509 Ajs_0114 Ajs_0115 FALSE 0.219 194 0.221
 2214509 2214510 Ajs_0115 Ajs_0116 FALSE 0.103 166 -4.851
 2214510 2214511 Ajs_0116 Ajs_0117 TRUE 0.887 51 18.755
 2214511 2214512 Ajs_0117 Ajs_0118 FALSE 0.416 194 53.146
 2214512 2214513 Ajs_0118 Ajs_0119 TRUE 0.862 72 35.036
 2214514 2214515 Ajs_0120 Ajs_0121 FALSE 0.121 263 5.98
 2214515 2214516 Ajs_0121 Ajs_0122 TRUE 0.791 79 -1.078
 2214516 2214517 Ajs_0122 Ajs_0123 FALSE 0.29 133 -1.749
 2214517 2214518 Ajs_0123 Ajs_0124 TRUE 0.608 64 2.026
 2214518 2214519 Ajs_0124 Ajs_0125 FALSE 0.025 260 -0.176
 2214519 2214520 Ajs_0125 Ajs_0126 FALSE 0.214 2 -1.063
 2214520 2214521 Ajs_0126 Ajs_0127 TRUE 0.95 18 0.412
 2214521 2214522 Ajs_0127 Ajs_0128 FALSE 0.276 96 -2.078
 2214522 2214523 Ajs_0128 Ajs_0129 TRUE 0.95 -3 54.794
 2214523 2214524 Ajs_0129 Ajs_0130 TRUE 0.977 27 0.842
 2214524 2214525 Ajs_0130 Ajs_0131 TRUE 0.778 -3 0.657
 2214528 2214529 Ajs_0134 Ajs_0135 FALSE 0.002 358 -2.647
 2214529 2214530 Ajs_0135 Ajs_0136 FALSE 0.069 181 -14.194
 2214530 2214531 Ajs_0136 Ajs_0137 TRUE 0.686 30 -9.788
 2214534 2214535 Ajs_0140 Ajs_0141 TRUE 0.935 29 103.971
 2214535 2214536 Ajs_0141 Ajs_0142 TRUE 0.97 46 84.411
 2214536 2214537 Ajs_0142 Ajs_0143 TRUE 0.724 27 -1.554
 2214538 2214539 Ajs_0144 Ajs_0145 TRUE 0.885 44 -1.357
 2214540 2214541 Ajs_0146 Ajs_0147 FALSE 0.013 369 -3.896
 2214541 2214542 Ajs_0147 Ajs_0148 TRUE 0.524 36 -1.91
 2214542 2214543 Ajs_0148 Ajs_0149 TRUE 0.963 34 56.924
 2214545 2214546 Ajs_0151 Ajs_0152 FALSE 0.21 84 -2.714
 2214548 2214549 Ajs_0154 Ajs_0155 TRUE 0.928 73 30.264
 2214549 2214550 Ajs_0155 Ajs_0156 TRUE 0.969 -3 34.78
 2214550 2214551 Ajs_0156 Ajs_0157 TRUE 0.99 -3 43.769
 2214554 2214555 Ajs_0160 Ajs_0161 FALSE 0.091 46 -4.397
 2214556 2214557 Ajs_0162 Ajs_0163 TRUE 0.969 21 8.814
 2214557 2214558 Ajs_0163 Ajs_0164 TRUE 0.96 47 504.961
 2214558 2214559 Ajs_0164 Ajs_0165 FALSE 0.064 140 -10.378
 2214559 2214560 Ajs_0165 Ajs_0166 FALSE 0.124 104 -4.061
 2214560 2214561 Ajs_0166 Ajs_0167 FALSE 0.281 3 -2.127
 2214561 2214562 Ajs_0167 Ajs_0168 TRUE 0.797 26 -2.196
 2214562 2214563 Ajs_0168 Ajs_0169 FALSE 0.355 62 -2.411
 2214563 2214564 Ajs_0169 Ajs_0170 FALSE 0.331 79 -0.417
 2214564 2214565 Ajs_0170 Ajs_0171 TRUE 0.524 93 17.369
 2214565 2214566 Ajs_0171 Ajs_0172 TRUE 0.558 78 18.703
 2214567 2214568 Ajs_0173 Ajs_0174 TRUE 0.51 -3 -12.894
 2214568 2214569 Ajs_0174 Ajs_0175 FALSE 0.126 151 -8.294
 2214570 2214571 Ajs_0176 Ajs_0177 TRUE 0.57 9 0
 2214572 2214573 Ajs_0178 Ajs_0179 FALSE 0.296 148 0
 2214574 2214575 Ajs_0180 Ajs_0181 TRUE 0.505 70 0.049
 2214575 2214576 Ajs_0181 Ajs_0182 TRUE 0.809 47 2.909
 2214576 2214577 Ajs_0182 Ajs_0183 TRUE 0.801 5 60.962
 2214577 2214578 Ajs_0183 Ajs_0184 FALSE 0.215 109 -6.3
 2214578 2214579 Ajs_0184 Ajs_0185 FALSE 0.141 9 -1.504
 2214579 2214580 Ajs_0185 Ajs_0186 TRUE 0.947 -3 0.621
 2214580 2214581 Ajs_0186 Ajs_0187 TRUE 0.857 -3 0.621
 2214582 2214583 Ajs_0188 Ajs_0189 TRUE 0.657 5 11.658
 2214585 2214586 Ajs_0191 Ajs_0192 TRUE 0.56 -3 -0.115
 2214586 2214587 Ajs_0192 Ajs_0193 FALSE 0.295 85 0
 2214587 2214588 Ajs_0193 Ajs_0194 TRUE 0.967 -25 9.092
 2214589 2214590 Ajs_0195 Ajs_0196 TRUE 0.751 -3 0
 2214590 2214591 Ajs_0196 Ajs_0197 TRUE 0.53 8 0
 2214591 2214592 Ajs_0197 Ajs_0198 TRUE 0.943 -19 14.737
 2214594 2214595 Ajs_0200 Ajs_0201 FALSE 0.457 99 21.892
 2214595 2214596 Ajs_0201 Ajs_0202 FALSE 0.298 97 -0.44
 2214596 2214597 Ajs_0202 Ajs_0203 FALSE 0.312 86 -0.417
 2214598 2214599 Ajs_0204 Ajs_0205 TRUE 0.988 25 2.544
 2214600 2214601 Ajs_0206 Ajs_0207 TRUE 0.812 47 5.815
 2214601 2214602 Ajs_0207 Ajs_0208 TRUE 0.981 26 15.565
 2214602 2214603 Ajs_0208 Ajs_0209 TRUE 0.983 25 12.049
 2214603 2214604 Ajs_0209 Ajs_0210 TRUE 0.862 -3 12.049
 2214604 2214605 Ajs_0210 Ajs_0211 TRUE 0.704 8 15.565
 2214607 2214608 Ajs_0213 Ajs_0214 TRUE 0.958 22 6.088
 2214608 2214609 Ajs_0214 Ajs_0215 TRUE 0.797 36 0
 2214611 2214612 Ajs_0217 Ajs_0218 TRUE 0.938 23 3.327
 2214612 2214613 Ajs_0218 Ajs_0219 TRUE 0.719 15 -1.231
 2214613 2214614 Ajs_0219 Ajs_0220 TRUE 0.683 63 2.492
 2214614 2214615 Ajs_0220 Ajs_0221 TRUE 0.82 74 0.935
 2214615 2214616 Ajs_0221 Ajs_0222 TRUE 0.925 42 29.702
 2214616 2214617 Ajs_0222 Ajs_0223 TRUE 0.995 15 123.141
 2214617 2214618 Ajs_0223 Ajs_0224 TRUE 0.988 22 169.094
 2214618 2214619 Ajs_0224 Ajs_0225 TRUE 0.96 15 14.496
 2214619 2214620 Ajs_0225 Ajs_0226 TRUE 0.714 55 0.448
 2214620 2214621 Ajs_0226 Ajs_0227 TRUE 0.785 20 -1.018
 2214622 2214623 Ajs_0228 Ajs_0229 FALSE 0.369 103 -0.671
 2214624 2214625 Ajs_0230 Ajs_0231 TRUE 0.652 3 16.36
 2214625 2214626 Ajs_0231 Ajs_0232 TRUE 0.816 -3 0.204
 2214628 2214629 Ajs_0234 Ajs_0235 TRUE 0.936 33 16.193
 2214630 2214631 Ajs_0236 Ajs_0237 TRUE 0.991 3 800.569
 2214631 2214632 Ajs_0237 Ajs_0238 TRUE 0.997 11 917.63
 2214633 2214634 Ajs_0239 Ajs_0240 TRUE 0.986 30 475.715
 2214634 2214635 Ajs_0240 Ajs_0241 TRUE 0.988 -3 257.676
 2214635 2214636 Ajs_0241 Ajs_0242 TRUE 0.992 28 82.017
 2214637 2214638 Ajs_0243 Ajs_0244 FALSE 0.411 133 -5.374
 2214638 2214639 Ajs_0244 Ajs_0245 TRUE 0.983 -3 62.367
 2214639 2214640 Ajs_0245 Ajs_0246 TRUE 0.981 40 19.347
 2214640 2214641 Ajs_0246 Ajs_0247 FALSE 0.342 166 -5.644
 2214641 2214642 Ajs_0247 Ajs_0248 TRUE 0.55 38 -18.441
 2214642 2214643 Ajs_0248 Ajs_0249 FALSE 0.017 300 -6.994
 2214644 2214645 Ajs_0250 Ajs_0251 TRUE 0.954 3 217.152
 2214645 2214646 Ajs_0251 Ajs_0252 TRUE 0.972 0 215.569
 2214646 2214647 Ajs_0252 Ajs_0253 TRUE 0.986 18 106.154
 2214647 2214648 Ajs_0253 Ajs_0254 FALSE 0.03 245 -8.671
 2214648 2214649 Ajs_0254 Ajs_0255 TRUE 0.7 77 2.937
 2214649 2214650 Ajs_0255 Ajs_0256 FALSE 0.173 149 -0.315
 2214650 2214651 Ajs_0256 Ajs_0257 FALSE 0.123 180 0
 2214652 2214653 Ajs_0258 Ajs_0259 FALSE 0.118 0 -17.422
 2214655 2214656 Ajs_0261 Ajs_0262 TRUE 0.97 11 319.161
 2214656 2214657 Ajs_0262 Ajs_0263 TRUE 0.97 29 107.976
 2214657 2214658 Ajs_0263 Ajs_0264 TRUE 0.836 59 50.792
 2214658 2214659 Ajs_0264 Ajs_0265 FALSE 0.033 104 -3.229
 2214659 2214660 Ajs_0265 Ajs_0266 TRUE 0.825 40 7.566
 2214661 2214662 Ajs_0267 Ajs_0268 FALSE 0.061 210 -1.116
 2214662 2214663 Ajs_0268 Ajs_0269 FALSE 0.274 98 -2.604
 2214663 2214664 Ajs_0269 Ajs_0270 TRUE 0.781 10 32.668
 2214664 2214665 Ajs_0270 Ajs_0271 TRUE 0.789 72 49.963
 2214665 2214666 Ajs_0271 Ajs_0272 TRUE 0.726 80 30.01
 2214666 2214667 Ajs_0272 Ajs_0273 FALSE