VIMSS Operon Predictions for Anabaena variabilis ATCC 29413

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 1047624 1047625 Ava_0001 Ava_0002 TRUE 0.694 418 1288.224
 1047626 1047627 Ava_0003 Ava_0004 TRUE 0.959 4 329.841
 1047627 1047628 Ava_0004 Ava_0005 FALSE 0.025 351 -0.252
 1047629 1047630 Ava_0006 Ava_0007 TRUE 0.614 8 3.17
 1047630 1047631 Ava_0007 Ava_0008 FALSE 0.313 214 0.069
 1047633 1047634 Ava_0010 Ava_0011 FALSE 0.006 353 0.069
 1047635 1047636 Ava_0012 Ava_0013 FALSE 0.073 343 1.179
 1047637 1047638 Ava_0014 Ava_0015 FALSE 0.01 311 0.069
 1047638 1047639 Ava_0015 Ava_0016 TRUE 0.747 51 0.069
 1047639 1047640 Ava_0016 Ava_0017 TRUE 0.59 -3 4.671
 1047640 1047641 Ava_0017 Ava_0018 FALSE 0.065 30 -0.056
 1047643 1047644 Ava_0020 Ava_0021 FALSE 0.088 1 -0.472
 1047649 1047650 Ava_0026 Ava_0027 TRUE 0.549 120 0.069
 1047650 1047651 Ava_0027 Ava_0028 FALSE 0.379 197 0
 1047651 1047652 Ava_0028 Ava_0029 TRUE 0.501 16 0
 1047653 1047654 Ava_0030 Ava_0031 FALSE 0.029 306 -0.812
 1047654 1047655 Ava_0031 Ava_0032 TRUE 0.945 20 13.605
 1047655 1047656 Ava_0032 Ava_0033 TRUE 0.501 181 0.637
 1047656 1047657 Ava_0033 Ava_0034 FALSE 0.175 271 2.05
 1047664 1047665 Ava_0041 Ava_0042 FALSE 0.354 -7 0.069
 1047665 1047666 Ava_0042 Ava_0043 FALSE 0.483 158 0.069
 1047667 1047668 Ava_0044 Ava_0045 TRUE 0.94 50 0.68
 1047668 1047669 Ava_0045 Ava_0046 TRUE 0.983 71 47.976
 1047669 1047670 Ava_0046 Ava_0047 TRUE 0.995 7 321.503
 1047670 1047671 Ava_0047 Ava_0048 TRUE 0.995 62 3.319
 1047673 1047674 Ava_0050 Ava_0051 FALSE 0.004 411 0.069
 1047674 1047675 Ava_0051 Ava_0052 TRUE 0.891 129 8.16
 1047675 1047676 Ava_0052 Ava_0053 FALSE 0.012 216 -2.709
 1047676 1047677 Ava_0053 Ava_0054 FALSE 0.354 -7 0.069
 1047677 1047678 Ava_0054 Ava_0055 TRUE 0.554 129 0
 1047680 1047681 Ava_0057 Ava_0058 FALSE 0.001 625 0.069
 1047681 1047682 Ava_0058 Ava_0059 TRUE 0.929 17 1.179
 1047682 1047683 Ava_0059 Ava_0060 TRUE 0.899 5 12.682
 1047683 1047684 Ava_0060 Ava_0061 TRUE 0.986 43 0.477
 1047684 1047685 Ava_0061 Ava_0062 TRUE 0.969 106 0.499
 1047686 1047687 Ava_0063 Ava_0064 FALSE 0.217 293 0.069
 1047688 1047689 Ava_0065 Ava_0066 TRUE 0.974 26 0.069
 1047689 1047690 Ava_0066 Ava_0067 FALSE 0.07 472 0.069
 1047691 1047692 Ava_0068 Ava_0069 FALSE 0.07 43 -0.915
 1047692 1047693 Ava_0069 Ava_0070 FALSE 0.401 38 -0.822
 1047695 1047696 Ava_0072 Ava_0073 TRUE 0.738 14 3.853
 1047696 1047697 Ava_0073 Ava_0074 TRUE 0.738 106 0.637
 1047697 1047698 Ava_0074 Ava_0075 TRUE 0.949 144 0.069
 1047698 1047699 Ava_0075 Ava_0076 FALSE 0.226 -3 0.069
 1047699 1047700 Ava_0076 Ava_0077 FALSE 0.004 427 0.069
 1047700 1047701 Ava_0077 Ava_0078 FALSE 0.03 208 0.069
 1047701 1047702 Ava_0078 Ava_0079 TRUE 0.969 105 0
 1047703 1047704 Ava_0080 Ava_0081 FALSE 0.001 757 0.069
 1047704 1047705 Ava_0081 Ava_0082 TRUE 0.943 144 26.57
 1047705 1047706 Ava_0082 Ava_0083 FALSE 0.459 209 0.694
 1047706 1047707 Ava_0083 Ava_0084 FALSE 0.136 469 0.069
 1047710 1047711 Ava_0087 Ava_0088 TRUE 0.908 52 1.869
 1047712 1047713 Ava_0089 Ava_0090 FALSE 0.046 107 -1.713
 1047713 1047714 Ava_0090 Ava_0091 TRUE 0.791 74 2.739
 1047716 1047717 Ava_0093 Ava_0094 TRUE 0.567 280 26.83
 1047717 1047718 Ava_0094 Ava_0095 TRUE 0.974 134 28.177
 1047718 1047719 Ava_0095 Ava_0096 TRUE 0.973 77 51.117
 1047719 1047720 Ava_0096 Ava_0097 TRUE 0.783 249 1300.954
 1047720 1047721 Ava_0097 Ava_0098 TRUE 0.988 130 1086.654
 1047722 1047723 Ava_0099 Ava_0100 TRUE 0.603 117 -0.077
 1047725 1047726 Ava_0102 Ava_0103 TRUE 0.727 40 -0.035
 1047726 1047727 Ava_0103 Ava_0104 FALSE 0.017 468 -0.246
 1047727 1047728 Ava_0104 Ava_0105 TRUE 0.859 73 6.544
 1047728 1047729 Ava_0105 Ava_0106 TRUE 0.964 179 -0.159
 1047730 1047731 Ava_0107 Ava_0108 FALSE 0.164 252 -0.169
 1047732 1047733 Ava_0109 Ava_0110 FALSE 0.298 188 -0.03
 1047733 1047734 Ava_0110 Ava_0111 TRUE 0.541 243 0.174
 1047734 1047735 Ava_0111 Ava_0112 TRUE 0.943 98 29.241
 1047735 1047736 Ava_0112 Ava_0113 FALSE 0.05 419 0
 1047736 1047737 Ava_0113 Ava_0114 FALSE 0.146 311 0
 1047737 1047738 Ava_0114 Ava_0115 FALSE 0.02 658 0
 1047742 1047743 Ava_0119 Ava_0120 FALSE 0.298 107 0.206
 1047744 1047745 Ava_0121 Ava_0122 TRUE 0.624 108 1.137
 1047745 1047746 Ava_0122 Ava_0123 FALSE 0 842 -0.637
 1047746 1047747 Ava_0123 Ava_0124 TRUE 0.721 389 1.869
 1047747 1047748 Ava_0124 Ava_0125 FALSE 0.111 103 0.749
 1047748 1047749 Ava_0125 Ava_0126 TRUE 0.982 40 31.189
 1047749 1047750 Ava_0126 Ava_0127 FALSE 0.051 92 -3.84
 1047750 1047751 Ava_0127 Ava_0128 FALSE 0.002 420 -1.851
 1047753 1047754 Ava_0130 Ava_0131 FALSE 0.116 233 0.499
 1047755 1047756 Ava_0132 Ava_0133 TRUE 0.656 104 0.069
 1047756 1047757 Ava_0133 Ava_0134 FALSE 0.1 261 -0.302
 1047757 1047758 Ava_0134 Ava_0135 FALSE 0.073 271 0.069
 1047758 1047759 Ava_0135 Ava_0136 TRUE 0.689 65 0.069
 1047759 1047760 Ava_0136 Ava_0137 FALSE 0.216 172 -0.553
 1047760 1047761 Ava_0137 Ava_0138 FALSE 0.002 392 0.637
 1047762 1047763 Ava_0139 Ava_0140 FALSE 0.013 587 3.092
 1047763 1047764 Ava_0140 Ava_0141 FALSE 0.003 327 -2.782
 1047764 1047765 Ava_0141 Ava_0142 FALSE 0.181 279 10.94
 1047765 1047766 Ava_0142 Ava_0143 FALSE 0 1227 -2.783
 1047766 1047767 Ava_0143 Ava_0144 FALSE 0.02 467 0.749
 1047767 1047768 Ava_0144 Ava_0145 FALSE 0.037 569 3.997
 1047773 1047774 Ava_0150 Ava_0151 TRUE 0.676 86 0.069
 1047777 1047778 Ava_0154 Ava_0155 FALSE 0.481 70 0.402
 1047780 1047781 Ava_0157 Ava_0158 FALSE 0 950 -0.206
 1047782 1047783 Ava_0159 Ava_0160 TRUE 0.842 74 12.174
 1047783 1047784 Ava_0160 Ava_0161 TRUE 0.713 177 11.047
 1047784 1047785 Ava_0161 Ava_0162 TRUE 0.897 163 1.757
 1047785 1047786 Ava_0162 Ava_0163 TRUE 0.861 100 1.757
 1047787 1047788 Ava_0164 Ava_0165 FALSE 0.001 448 1.179
 1047792 1047793 Ava_0169 Ava_0170 FALSE 0.404 81 -0.581
 1047793 1047794 Ava_0170 Ava_0171 TRUE 0.89 14 21.438
 1047794 1047795 Ava_0171 Ava_0172 TRUE 0.626 112 -0.013
 1047796 1047797 Ava_0173 Ava_0174 TRUE 0.871 114 3.197
 1047797 1047798 Ava_0174 Ava_0175 FALSE 0.011 667 3.186
 1047800 1047801 Ava_0177 Ava_0178 TRUE 0.98 146 235.563
 1047801 1047802 Ava_0178 Ava_0179 TRUE 0.84 132 1.179
 1047806 1047807 Ava_R0001 Ava_0183 TRUE 0.762 41 0
 1047811 1047812 Ava_0187 Ava_0188 FALSE 0.001 426 0.069
 1047815 1047816 Ava_0191 Ava_0192 TRUE 0.994 42 116.556
 1047816 1047817 Ava_0192 Ava_0193 TRUE 0.881 45 1.179
 1047819 1047820 Ava_0195 Ava_0196 FALSE 0.094 352 2.299
 1047820 1047821 Ava_0196 Ava_0197 TRUE 0.915 16 24.355
 1047822 1047823 Ava_0198 Ava_0199 FALSE 0 786 -2.709
 1047823 1047824 Ava_0199 Ava_0200 TRUE 0.979 44 32.281
 1047824 1047825 Ava_0200 Ava_0201 FALSE 0.145 295 1.179
 1047825 1047826 Ava_0201 Ava_0202 FALSE 0 1932 -4.466
 1047827 1047828 Ava_0203 Ava_0204 TRUE 0.949 79 26.332
 1047828 1047829 Ava_0204 Ava_0205 FALSE 0.183 245 -4.764
 1047830 1047831 Ava_0206 Ava_0207 FALSE 0.027 150 -8.812
 1047832 1047833 Ava_0208 Ava_0209 TRUE 0.912 49 2.05
 1047833 1047834 Ava_0209 Ava_0210 TRUE 0.906 35 2.05
 1047835 1047836 Ava_0211 Ava_0212 FALSE 0.034 505 0.069
 1047836 1047837 Ava_0212 Ava_0213 FALSE 0.413 176 0.069
 1047841 1047842 Ava_0217 Ava_0218 TRUE 0.764 43 0
 1047843 1047844 Ava_0219 Ava_0220 TRUE 0.987 65 1.179
 1047847 1047848 Ava_0223 Ava_0224 FALSE 0.001 852 0.069
 1047848 1047849 Ava_0224 Ava_0225 FALSE 0 787 0.069
 1047851 1047852 Ava_0227 Ava_0228 TRUE 0.559 16 0.499
 1047852 1047853 Ava_0228 Ava_0229 FALSE 0.072 47 -2.709
 1047853 1047854 Ava_0229 Ava_0230 FALSE 0.107 105 0.069
 1047854 1047855 Ava_0230 Ava_0231 TRUE 0.565 144 0
 1047855 1047856 Ava_0231 Ava_0232 TRUE 0.756 35 0
 1047857 1047858 Ava_0233 Ava_0234 FALSE 0.219 1 0
 1047860 1047861 Ava_0236 Ava_0237 TRUE 0.74 39 0.069
 1047861 1047862 Ava_0237 Ava_0238 FALSE 0.025 225 0.069
 1047862 1047863 Ava_0238 Ava_0239 TRUE 0.972 53 0.069
 1047865 1047866 Ava_0241 Ava_0242 TRUE 0.964 92 25.311
 1047866 1047867 Ava_0242 Ava_0243 FALSE 0.021 420 -0.585
 1047867 1047868 Ava_0243 Ava_0244 TRUE 0.73 98 -0.004
 1047869 1047870 Ava_0245 Ava_0246 FALSE 0.302 -3 0
 1047870 1047871 Ava_0246 Ava_0247 TRUE 0.66 100 0.069
 1047871 1047872 Ava_0247 Ava_0248 TRUE 0.556 105 -0.209
 1047872 1047873 Ava_0248 Ava_0249 TRUE 0.899 51 -0.077
 1047873 1047874 Ava_0249 Ava_0250 TRUE 0.564 -3 1.8
 1047874 1047875 Ava_0250 Ava_0251 FALSE 0.035 520 0
 1047876 1047877 Ava_0252 Ava_0253 TRUE 0.662 99 0.069
 1047877 1047878 Ava_0253 Ava_0254 FALSE 0.437 170 0.069
 1047878 1047879 Ava_0254 Ava_0255 FALSE 0.005 393 0.069
 1047879 1047880 Ava_0255 Ava_0256 FALSE 0.34 3 0.473
 1047882 1047883 Ava_0258 Ava_0259 FALSE 0.183 277 0.069
 1047885 1047886 Ava_0261 Ava_0262 FALSE 0.19 261 0
 1047886 1047887 Ava_0262 Ava_0263 TRUE 0.973 15 54.236
 1047887 1047888 Ava_0263 Ava_0264 FALSE 0.003 463 0.069
 1047888 1047889 Ava_0264 Ava_0265 TRUE 0.745 164 3.17
 1047889 1047890 Ava_0265 Ava_0266 TRUE 0.871 44 3.744
 1047890 1047891 Ava_0266 Ava_0267 TRUE 0.878 39 1.179
 1047891 1047892 Ava_0267 Ava_0268 FALSE 0.038 387 -0.188
 1047892 1047893 Ava_0268 Ava_0269 TRUE 0.672 18 0.749
 1047893 1047894 Ava_0269 Ava_0270 TRUE 0.786 -7 0.749
 1047894 1047895 Ava_0270 Ava_0271 TRUE 0.701 23 0.749
 1047895 1047896 Ava_0271 Ava_0272 TRUE 0.793 33 0.499
 1047896 1047897 Ava_0272 Ava_0273 FALSE 0.068 250 -0.826
 1047897 1047898 Ava_0273 Ava_0274 TRUE 0.697 146 3.17
 1047898 1047899 Ava_0274 Ava_0275 FALSE 0.001 443 0.534
 1047899 1047900 Ava_0275 Ava_0276 TRUE 0.885 189 29.621
 1047900 1047901 Ava_0276 Ava_0277 TRUE 0.676 278 15.466
 1047901 1047902 Ava_0277 Ava_0278 FALSE 0.011 508 15.122
 1047902 1047903 Ava_0278 Ava_0279 FALSE 0.429 117 -0.123
 1047903 1047904 Ava_0279 Ava_0280 TRUE 0.839 65 0.986
 1047904 1047905 Ava_0280 Ava_0281 TRUE 0.675 76 0.069
 1047905 1047906 Ava_0281 Ava_0282 TRUE 0.675 78 0.069
 1047907 1047908 Ava_0283 Ava_0284 FALSE 0.006 357 0.069
 1047909 1047910 Ava_0285 Ava_0286 TRUE 0.91 -7 47.026
 1047910 1047911 Ava_0286 Ava_0287 TRUE 0.746 79 0.499
 1047911 1047912 Ava_0287 Ava_0288 FALSE 0.258 270 0.499
 1047912 1047913 Ava_0288 Ava_0289 FALSE 0.022 237 0.069
 1047916 1047917 Ava_0292 Ava_0293 FALSE 0.018 638 -0.052
 1047921 1047922 Ava_0297 Ava_0298 FALSE 0.011 1112 0
 1047923 1047924 Ava_0299 Ava_0300 TRUE 0.759 189 0.206
 1047924 1047925 Ava_0300 Ava_0301 FALSE 0.054 66 -0.748
 1047927 1047928 Ava_0303 Ava_0304 FALSE 0.001 638 1.869
 1047928 1047929 Ava_0304 Ava_0305 FALSE 0.249 373 1.179
 1047929 1047930 Ava_0305 Ava_0306 FALSE 0.098 337 3.17
 1047932 1047933 Ava_0308 Ava_0309 FALSE 0.098 115 0.069
 1047933 1047934 Ava_0309 Ava_0310 FALSE</