VIMSS Operon Predictions for Burkholderia mallei ATCC 23344

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 735061 735062 BMA0001 BMA0002 dnaA dnaN TRUE 0.965 163 249.215
 735062 735063 BMA0002 BMA0003 dnaN gyrB TRUE 0.988 189 92.998
 735063 735064 BMA0003 BMA0004 gyrB FALSE 0.008 526 0
 735064 735065 BMA0004 BMA0005 FALSE 0.458 24 0
 735066 735067 BMA0006 BMA0007 TRUE 0.6 52 0.009
 735067 735068 BMA0007 BMA0008 TRUE 0.743 -3 0.009
 735070 2226915 BMA0010 BMA0011 FALSE 0.307 -27 0
 2226918 2226919 BMA0015 BMA0016 FALSE 0.196 176 0
 735072 735073 BMA0019 BMA0020 FALSE 0.022 449 -0.308
 735073 735074 BMA0020 BMA0021 TRUE 0.841 -3 1.205
 735074 2226922 BMA0021 BMA0022 TRUE 0.675 2 0
 2226922 735075 BMA0022 BMA0023 FALSE 0.087 233 0
 735075 735076 BMA0023 BMA0024 FALSE 0.348 70 -0.348
 735076 735077 BMA0024 BMA0025 FALSE 0.387 43 0
 735077 735078 BMA0025 BMA0026 FALSE 0.109 216 0
 735079 735080 BMA0027 BMA0028 FALSE 0.424 77 -0.56
 735080 735081 BMA0028 BMA0029 TRUE 0.728 35 -13.003
 735081 735082 BMA0029 BMA0030 TRUE 0.861 -3 1.82
 735082 735083 BMA0030 BMA0031 FALSE 0.438 89 0
 735084 735085 BMA0032 BMA0033 TRUE 0.605 28 0.336
 735085 735086 BMA0033 BMA0034 TRUE 0.586 50 0.007
 2226924 735087 BMA0036 BMA0037 TRUE 0.609 -3 0
 2226925 735088 BMA0038 BMA0039 TRUE 0.609 -3 0
 735088 735089 BMA0039 BMA0040 TRUE 0.744 -3 16.573
 735089 2226926 BMA0040 BMA0041 TRUE 0.609 -3 0
 2226926 735090 BMA0041 BMA0042 TRUE 0.609 -3 0
 735090 735091 BMA0042 BMA0043 TRUE 0.951 -3 15.97
 735091 735092 BMA0043 BMA0044 FALSE 0.247 245 1.52
 735093 735094 BMA0045 BMA0046 TRUE 0.591 33 -2.107
 735094 735095 BMA0046 BMA0047 TRUE 0.767 72 -15.497
 735095 735096 BMA0047 BMA0048 FALSE 0.092 340 -10.972
 735098 735099 BMA0050 BMA0051 FALSE 0.138 200 0
 735100 735101 BMA0052 BMA0053 lipA lipB TRUE 0.998 -7 301.061
 735102 735103 BMA0054 BMA0055 FALSE 0.478 61 0
 735104 735105 BMA0056 BMA0057 TRUE 0.948 -3 17.728
 735105 735106 BMA0057 BMA0058 TRUE 0.915 90 14.469
 735106 735107 BMA0058 BMA0059 FALSE 0.402 109 0
 735107 735108 BMA0059 BMA0060 FALSE 0.355 127 0
 735108 735109 BMA0060 BMA0061 TRUE 0.899 47 19.896
 735109 735110 BMA0061 BMA0062 TRUE 0.692 117 6.143
 735110 735111 BMA0062 BMA0063 TRUE 0.736 50 -0.662
 735111 735112 BMA0063 BMA0064 TRUE 0.977 19 107.358
 735112 735113 BMA0064 BMA0065 TRUE 0.99 24 201.436
 735113 735114 BMA0065 BMA0066 TRUE 0.99 21 179.799
 735115 735116 BMA0067 BMA0068 cpdB TRUE 0.831 77 2.637
 735116 735117 BMA0068 BMA0069 FALSE 0.01 386 -2.81
 735117 735118 BMA0069 BMA0070 TRUE 0.987 6 148.405
 735118 735119 BMA0070 BMA0071 TRUE 0.623 110 0.328
 735120 735121 BMA0072 BMA0073 TRUE 0.771 141 9.324
 735121 2226927 BMA0073 BMA0074 FALSE 0.005 573 0
 2226927 735122 BMA0074 BMA0075 FALSE 0.475 58 0
 735122 735123 BMA0075 BMA0076 TRUE 0.799 90 3.187
 735123 735124 BMA0076 BMA0077 FALSE 0.22 197 -3.862
 735125 735126 BMA0078 BMA0079 TRUE 0.871 79 7.696
 735126 2226928 BMA0079 BMA0080 TRUE 0.609 -3 0
 2226928 2226929 BMA0080 BMA0081 metH FALSE 0.169 188 0
 2226929 735127 BMA0081 BMA0082 metH FALSE 0.057 267 0
 735129 735130 BMA0084 BMA0085 argS TRUE 0.98 79 75.65
 735130 735131 BMA0085 BMA0086 dsbA TRUE 0.949 52 14.682
 735131 735132 BMA0086 BMA0087 dsbA TRUE 0.753 17 1.251
 735134 735135 BMA0089 BMA0090 FALSE 0.254 196 0.015
 735135 735136 BMA0090 BMA0091 FALSE 0.327 175 0.015
 735136 735137 BMA0091 BMA0092 FALSE 0.306 234 -0.69
 735139 735140 BMA0094 BMA0095 aceK TRUE 0.919 58 3.858
 735140 735141 BMA0095 BMA0096 fadA FALSE 0.114 -13 -10.141
 735141 735142 BMA0096 BMA0097 fadA TRUE 0.807 31 0.481
 735142 735143 BMA0097 BMA0098 FALSE 0.193 32 -19.125
 735143 2226930 BMA0098 BMA0099 FALSE 0.114 214 0
 2226930 735144 BMA0099 BMA0100 bioA FALSE 0.009 455 0
 735144 735145 BMA0100 BMA0101 bioA bioF TRUE 0.998 -3 195.546
 735145 735146 BMA0101 BMA0102 bioF bioD TRUE 0.998 -3 288.075
 735146 735147 BMA0102 BMA0103 bioD bioB TRUE 0.993 115 17.569
 735148 735149 BMA0104 BMA0105 FALSE 0.006 379 -0.327
 735149 735150 BMA0105 BMA0106 TRUE 0.734 171 9.574
 735150 2226931 BMA0106 BMA0107 FALSE 0.359 33 0
 2226931 735151 BMA0107 BMA0108 FALSE 0.042 291 0
 735151 735152 BMA0108 BMA0109 FALSE 0.291 145 0
 735152 735153 BMA0109 BMA0110 FALSE 0.432 22 0
 735153 735154 BMA0110 BMA0111 FALSE 0.458 24 0
 735154 735155 BMA0111 BMA0112 FALSE 0.357 31 0
 735158 735159 BMA0115 BMA0116 ada alkA TRUE 0.785 42 -5.37
 735159 735160 BMA0116 BMA0117 alkA gshA FALSE 0.159 172 -4.686
 735161 735162 BMA0118 BMA0119 TRUE 0.609 -3 0
 735162 2226932 BMA0119 BMA0120 TRUE 0.532 16 0
 735164 735165 BMA0123 BMA0124 TRUE 0.687 89 0.051
 735165 735166 BMA0124 BMA0125 TRUE 0.825 11 -1.207
 735166 735167 BMA0125 BMA0126 FALSE 0.127 207 0
 2226934 735170 BMA0129 BMA0130 TRUE 0.609 -3 0
 735170 735171 BMA0130 BMA0131 FALSE 0.446 52 0
 735171 735172 BMA0131 BMA0132 FALSE 0.458 24 0
 735172 735173 BMA0132 BMA0133 FALSE 0.343 181 0
 735173 735174 BMA0133 BMA_tRNA-Lys-2 FALSE 0.362 124 0
 735175 735176 BMA0135 BMA0136 TRUE 0.786 38 3.535
 735179 735180 BMA0139 BMA0140 topB FALSE 0.07 211 -1.712
 735180 735181 BMA0140 BMA0141 TRUE 0.771 60 1.01
 735182 735183 BMA0142 BMA0143 def-1 fmt TRUE 0.994 32 776.93
 735183 735184 BMA0143 BMA0144 fmt FALSE 0.343 121 -17.462
 735184 735185 BMA0144 BMA0145 TRUE 0.778 110 -11.206
 735185 735186 BMA0145 BMA0146 sun FALSE 0.047 378 23.107
 735186 735187 BMA0146 BMA0147 sun TRUE 0.973 -3 34.125
 735187 735188 BMA0147 BMA0148 TRUE 0.963 -10 41.597
 735188 735189 BMA0148 BMA0149 TRUE 0.988 1 18.092
 735189 735190 BMA0149 BMA_tRNA-Phe-2 FALSE 0.478 61 0
 735190 735191 BMA_tRNA-Phe-2 BMA0151 FALSE 0.399 45 0
 735191 735192 BMA0151 BMA0152 TRUE 0.668 -3 0
 735192 735193 BMA0152 BMA0153 TRUE 0.894 94 195.574
 735193 735194 BMA0153 BMA0154 TRUE 0.976 20 64.046
 735196 735197 BMA0156 BMA0157 TRUE 0.568 -3 -0.387
 735198 735199 BMA0158 BMA0159 mrdB mrdA TRUE 0.992 12 452.398
 735199 735200 BMA0159 BMA0160 mrdA mreD TRUE 0.955 184 32.107
 735200 735201 BMA0160 BMA0161 mreD TRUE 0.997 -3 190.877
 735201 735202 BMA0161 BMA0162 mreB TRUE 0.983 120 279.796
 735203 735204 BMA0163 BMA0164 gatC gatA TRUE 0.998 113 910.021
 735204 735205 BMA0164 BMA0165 gatA gatB TRUE 0.999 3 731.305
 735205 735206 BMA0165 BMA0166 gatB FALSE 0.2 127 -13.343
 735206 735207 BMA0166 BMA0167 xth-1 FALSE 0.202 32 -9.995
 735207 735208 BMA0167 BMA0168 xth-1 TRUE 0.741 167 -0.026
 735208 735209 BMA0168 BMA0169 FALSE 0.166 189 0
 735209 735210 BMA0169 BMA0170 TRUE 0.538 24 0.005
 735210 735211 BMA0170 BMA0171 TRUE 0.672 92 2.308
 735213 735214 BMA0173 BMA0174 TRUE 0.827 49 6.89
 735215 735216 BMA0175 BMA0176 FALSE 0.207 150 -5.431
 735217 735218 BMA0177 BMA0178 TRUE 0.938 2 18.344
 735218 735219 BMA0178 BMA0179 TRUE 0.794 127 18.753
 735220 735221 BMA0180 BMA0181 ilvA FALSE 0.371 20 -20.973
 735221 735222 BMA0181 BMA0182 ilvA FALSE 0.153 234 0.015
 735223 735224 BMA0183 BMA0184 TRUE 0.84 20 9.153
 735224 2226935 BMA0184 BMA0185 TRUE 0.609 -3 0
 2226935 735225 BMA0185 BMA0186 ubiE FALSE 0.419 48 0
 735225 735226 BMA0186 BMA0187 ubiE TRUE 0.89 90 3.647
 735226 2226936 BMA0187 BMA0188 FALSE 0.403 108 0
 2226936 735227 BMA0188 BMA0189 ubiB TRUE 0.597 13 0
 735227 735228 BMA0189 BMA0190 ubiB FALSE 0.121 171 0.98
 735228 2226937 BMA0190 BMA0191 FALSE 0.381 116 0
 2226937 2226938 BMA0191 BMA0192 FALSE 0.474 68 0
 2226938 735229 BMA0192 BMA0193 aspS FALSE 0.473 57 0
 735229 735230 BMA0193 BMA0194 aspS ntpA FALSE 0.482 209 103.999
 735230 735231 BMA0194 BMA0195 ntpA FALSE 0.027 39 0.291
 735231 735232 BMA0195 BMA0196 FALSE 0.129 190 -4.287
 735232 735233 BMA0196 BMA0197 TRUE 0.897 58 9.667
 735233 735234 BMA0197 BMA0198 TRUE 0.934 158 19.586
 735234 735235 BMA0198 BMA0199 TRUE 0.978 180 285.862
 735235 735236 BMA0199 BMA0200 TRUE 0.782 95 -3.892
 735241 735242 BMA0205 BMA0206 FALSE 0.098 223 0
 735242 735243 BMA0206 BMA0207 TRUE 0.953 4 203.822
 735244 735245 BMA0208 BMA0209 TRUE 0.983 67 245.615
 735245 735246 BMA0209 BMA0210 pdxA TRUE 0.938 22 279.185
 735246 735247 BMA0210 BMA0211 pdxA ksgA TRUE 0.927 32 376.021
 735249 735250 BMA0214 BMA0215 TRUE 0.591 85 0.005
 735250 735251 BMA0215 BMA0216 TRUE 0.912 48 11.707
 735251 735252 BMA0216 BMA0217 TRUE 0.964 43 71.07
 735252 735253 BMA0217 BMA0218 glyS TRUE 0.965 18 61.182
 735253 735254 BMA0218 BMA0219 glyS glyQ TRUE 0.999 17 754.624
 735254 735255 BMA0219 BMA0220 glyQ cutE FALSE 0.087 256 -40.916
 735255 735256 BMA0220 BMA0221 cutE corC TRUE 0.98 43 324.205
 735256 735257 BMA0221 BMA0222 corC FALSE 0.024 502 -12.363
 735257 735258 BMA0222 BMA0223 TRUE 0.693 21 0.389
 735260 735261 BMA0225 BMA0226 miaB TRUE 0.962 24 360.31
 735261 735262 BMA0226 BMA0227 miaB FALSE 0.005 486 -4.46
 735263 735264 BMA0228 BMA0229 TRUE 0.734 134 1.097
 735264 735265 BMA0229 BMA0230 ribB FALSE 0.005 419 0.89
 735266 735267 BMA0231 BMA0232 TRUE 0.607 130 -0.36
 735267 2226940 BMA0232 BMA0233 FALSE 0.464 77 0
 2226940 735268 BMA0233 BMA0234 FALSE 0.375 38 0
 735268 735269 BMA0234 BMA0235 TRUE 0.855 44 0.412
 735269 2226941 BMA0235 BMA0236 FALSE 0.378 39 0
 2226941 735270 BMA0236 BMA0237 FALSE 0.432 22 0
 735272 735273 BMA0239 BMA0240 glpF glpK TRUE 0.968 113 375.516
 735273 735274 BMA0240 BMA0241 glpK glpD TRUE 0.988 97 283.228
 735275 735276 BMA0243 BMA0244 glpR FALSE 0.002 309 2.433
 735277 735278 BMA0245 BMA0246 ggt-1 FALSE 0.012 303 -4.749
 735278 735279 BMA0246 BMA0247 TRUE 0.802 70 2.509
 735280 735281 BMA0248 BMA0249 rhlE-2 FALSE 0.29 128 -4.618
 735281 735282 BMA0249 BMA0250 TRUE 0.984 20 17.338
 735282 735283 BMA0250 BMA0251 FALSE 0.416 100 0
 735284 735285 BMA0252 BMA0253 FALSE 0.462 79 0
 735286 735287 BMA0254 BMA0255 dgoA FALSE 0.361 34 0
 2226943 2226944 BMA0257 BMA0258 FALSE 0.465 76 0
 735290 735291 BMA0260 BMA0261 TRUE 0.914 50 1.553
 735292 2226945 BMA0262 BMA0263 FALSE 0.005 563 0
 735294 735295 BMA0265 BMA0266 FALSE 0.458 24 0
 2226946 735296 BMA0267 BMA_tRNA-Met-2 FALSE 0.448 85 0
 735296 735297 BMA_tRNA-Met-2 BMA0269 FALSE 0.074 242 0
 735297 735298 BMA0269 BMA0270 FALSE 0.041 223 2.585
 735298 735299 BMA0270 BMA0271 TRUE 0.976 24 30.452
 735300 735301 BMA0272 BMA0273 recA TRUE 0.907 0 2.069
 735301 735302 BMA0273 BMA0274 TRUE 0.63 145 2.069