VIMSS Operon Predictions for Bacillus anthracis str. Sterne

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 637796 637797 BAS0001 BAS0002 TRUE 0.956 179 830.835
 637797 637798 BAS0002 BAS0003 TRUE 0.831 128 59.502
 637798 637799 BAS0003 BAS0004 TRUE 0.995 13 69.847
 637799 637800 BAS0004 BAS0005 TRUE 0.993 39 163.57
 637800 637801 BAS0005 BAS0006 TRUE 0.991 89 203.655
 637801 637802 BAS0006 rRNA-16s-1 FALSE 0.021 269 0
 637802 637805 rRNA-16s-1 rRNA-23s-1 FALSE 0.003 403 0
 637805 637806 rRNA-23s-1 rRNA-5s-1 FALSE 0.248 46 0
 637808 637809 BAS0011 BAS0012 FALSE 0.319 105 -10.168
 637809 637810 BAS0012 BAS0013 FALSE 0.178 162 -7.388
 637810 637811 BAS0013 BAS0014 TRUE 0.994 19 256.911
 637811 637812 BAS0014 BAS0015 FALSE 0.189 328 -28.991
 637812 637814 BAS0015 BAS0016 FALSE 0.031 257 0.158
 637815 637816 BAS0017 BAS0018 TRUE 0.999 3 25.206
 637816 637817 BAS0018 BAS0019 FALSE 0.27 126 -4.385
 637818 637819 BAS0020 BAS0021 FALSE 0.057 477 -3.478
 637819 637820 BAS0021 BAS0022 TRUE 0.988 23 113.28
 637820 637821 BAS0022 BAS0023 TRUE 0.995 15 913.336
 637821 637822 BAS0023 BAS0024 TRUE 0.985 15 16.408
 637822 637823 BAS0024 BAS0025 FALSE 0.228 215 5.508
 637823 637824 BAS0025 rRNA-16s-2 FALSE 0.03 246 0
 637824 637827 rRNA-16s-2 rRNA-23s-2 FALSE 0.003 403 0
 637827 637828 rRNA-23s-2 rRNA-5s-2 FALSE 0.248 46 0
 637828 637829 rRNA-5s-2 BAS0027 FALSE 0.07 188 0
 637829 637830 BAS0027 BAS0028 FALSE 0.189 72 -0.323
 637830 637831 BAS0028 BAS0029 TRUE 0.994 2 22.614
 637831 637832 BAS0029 BAS0030 TRUE 0.98 36 174.229
 637832 637833 BAS0030 BAS0031 TRUE 0.994 -3 72.612
 637833 637834 BAS0031 BAS0032 TRUE 0.995 0 52.437
 637834 637835 BAS0032 BAS0033 TRUE 0.903 121 18.18
 637835 637836 BAS0033 BAS0034 TRUE 0.981 -13 93.088
 637836 637837 BAS0034 BAS0035 TRUE 0.82 -31 10.391
 637839 637840 BAS0037 BAS0038 TRUE 0.92 166 214.074
 637840 637841 BAS0038 BAS0039 TRUE 0.854 215 75.338
 637841 637842 BAS0039 BAS0040 TRUE 0.996 -3 108.178
 637842 637843 BAS0040 BAS0041 TRUE 0.923 111 3.672
 637843 637844 BAS0041 BAS0042 FALSE 0.357 239 18.658
 637844 637845 BAS0042 BAS0043 TRUE 0.575 92 3.846
 637845 637846 BAS0043 BAS0044 FALSE 0.379 188 2.781
 637846 637847 BAS0044 BAS0045 TRUE 0.961 55 23.906
 637847 637848 BAS0045 BAS0046 TRUE 0.626 123 5.004
 637848 637849 BAS0046 BAS0047 TRUE 0.596 99 2.003
 637849 637850 BAS0047 BAS0048 FALSE 0.193 323 23.787
 637850 637851 BAS0048 BAS0049 TRUE 0.987 19 143.799
 637851 637852 BAS0049 BAS0050 TRUE 0.759 73 421.342
 637852 637853 BAS0050 BAS0051 TRUE 0.589 71 4.443
 637853 637854 BAS0051 BAS0052 TRUE 0.547 106 4.08
 637854 637855 BAS0052 BAS0053 TRUE 0.933 136 8.094
 637855 637856 BAS0053 BAS0054 FALSE 0.184 231 4.76
 637856 637857 BAS0054 BAS0055 TRUE 0.944 13 6.329
 637857 637858 BAS0055 BAS0056 TRUE 0.99 15 30.167
 637858 637859 BAS0056 BAS0057 TRUE 0.947 41 24.08
 637859 637860 BAS0057 BAS0058 TRUE 0.986 -3 7.087
 637860 637861 BAS0058 BAS0059 TRUE 0.918 -3 5.319
 637861 637862 BAS0059 BAS0060 TRUE 0.762 88 16.95
 637862 637865 BAS0060 BAS0061 FALSE 0.022 624 5.903
 637865 637866 BAS0061 BAS0062 FALSE 0.474 234 14.232
 637866 637867 BAS0062 BAS0063 TRUE 0.995 -3 128.042
 637867 637868 BAS0063 BAS0064 TRUE 0.957 86 143.541
 637868 637869 BAS0064 BAS0065 TRUE 0.804 225 -9.127
 637869 637870 BAS0065 BAS0066 TRUE 0.97 7 3.657
 637870 637871 BAS0066 BAS0067 FALSE 0.379 105 -13.948
 637871 637872 BAS0067 BAS0068 FALSE 0.251 221 -13.577
 637872 637873 BAS0068 BAS0069 TRUE 0.999 6 181.646
 637873 637874 BAS0069 BAS0070 TRUE 0.994 -6 5.259
 637874 637875 BAS0070 BAS0071 TRUE 0.99 -7 5.259
 637875 637876 BAS0071 BAS0072 TRUE 0.998 1 207.568
 637876 637877 BAS0072 BAS0073 TRUE 0.998 -3 177.1
 637877 637878 BAS0073 BAS0074 TRUE 0.739 -48 4.227
 637878 637879 BAS0074 BAS0075 TRUE 0.732 48 3.411
 637879 637880 BAS0075 BAS0076 TRUE 0.968 160 1.168
 637880 637881 BAS0076 rRNA-16s-3 FALSE 0.003 401 0
 637881 637882 rRNA-16s-3 rRNA-23s-3 FALSE 0.034 236 0
 637882 637883 rRNA-23s-3 rRNA-5s-3 FALSE 0.244 47 0
 637883 637884 rRNA-5s-3 BAS0078 FALSE 0.055 204 0
 637884 637885 BAS0078 BAS0079 TRUE 0.889 174 55.543
 637885 637886 BAS0079 BAS0080 TRUE 0.996 5 77.538
 637886 637887 BAS0080 BAS0081 TRUE 0.987 23 54.449
 637887 637888 BAS0081 BAS0082 TRUE 0.944 97 36.379
 637888 637889 BAS0082 BAS0083 TRUE 0.993 4 113.019
 637889 637890 BAS0083 BAS0084 TRUE 0.845 161 15.39
 637890 637891 BAS0084 BAS0085 TRUE 0.984 17 32.509
 637891 637892 BAS0085 BAS0086 TRUE 0.992 115 591.295
 637892 637893 BAS0086 BAS0087 TRUE 0.914 90 -19.4
 637893 637894 BAS0087 BAS0088 FALSE 0.044 433 21.578
 637894 637895 BAS0088 BAS0089 TRUE 0.982 -19 118.12
 637895 637896 BAS0089 BAS0090 TRUE 0.996 3 134.297
 637896 637897 BAS0090 BAS0091 TRUE 0.998 -3 90.217
 637897 637898 BAS0091 BAS0092 TRUE 0.995 4 109.553
 637898 637899 BAS0092 BAS0093 TRUE 0.94 68 39.241
 637899 637900 BAS0093 BAS0094 TRUE 0.6 132 12.733
 637900 637901 BAS0094 BAS0095 TRUE 0.98 33 47.948
 637901 637902 BAS0095 BAS0096 TRUE 0.952 132 297.47
 637902 637903 BAS0096 BAS0097 TRUE 0.929 168 1074.918
 637903 637904 BAS0097 BAS0098 TRUE 0.968 178 1401.336
 637904 637905 BAS0098 BAS0099 TRUE 0.918 233 1015.429
 637905 637906 BAS0099 BAS0100 TRUE 0.99 68 1368.529
 637906 637907 BAS0100 BAS0101 TRUE 0.968 75 9.987
 637907 637908 BAS0101 BAS0102 FALSE 0.201 293 6.678
 637908 637909 BAS0102 BAS0103 TRUE 0.995 38 249.579
 637909 637910 BAS0103 BAS0104 TRUE 0.949 81 24.246
 637910 637911 BAS0104 BAS0105 TRUE 0.964 115 29.529
 637911 637912 BAS0105 BAS0106 TRUE 0.996 30 1351.432
 637912 637913 BAS0106 BAS0107 TRUE 0.928 208 1185.784
 637913 637914 BAS0107 BAS0108 TRUE 0.992 118 539.462
 637914 637915 BAS0108 BAS0109 FALSE 0.403 399 450.269
 637915 637916 BAS0109 BAS0110 TRUE 0.993 35 1139.707
 637916 637917 BAS0110 BAS0111 TRUE 0.995 26 1272.053
 637917 637918 BAS0111 BAS0112 TRUE 0.999 0 1311.155
 637918 637919 BAS0112 BAS0113 TRUE 0.994 29 1285.879
 637919 637920 BAS0113 BAS0114 TRUE 0.989 61 1323.191
 637920 637921 BAS0114 BAS0115 TRUE 0.997 18 1213.031
 637921 637922 BAS0115 BAS0116 TRUE 0.999 4 1214.455
 637922 637923 BAS0116 BAS0117 TRUE 0.999 2 1317.914
 637923 637924 BAS0117 BAS0118 TRUE 0.997 -10 1210.102
 637924 637925 BAS0118 BAS0119 TRUE 0.997 21 1196.094
 637925 637926 BAS0119 BAS0120 TRUE 0.992 44 1215.417
 637926 637927 BAS0120 BAS0121 TRUE 0.993 39 1321.5
 637927 637928 BAS0121 BAS0122 TRUE 0.995 27 1325.218
 637928 637929 BAS0122 BAS0123 TRUE 0.992 34 400.468
 637929 637930 BAS0123 BAS0124 TRUE 0.993 30 396.815
 637930 637931 BAS0124 BAS0125 TRUE 0.994 33 1488.859
 637931 637932 BAS0125 BAS0126 TRUE 0.994 32 1443.555
 637932 637933 BAS0126 BAS0127 TRUE 0.996 22 1249.803
 637933 637934 BAS0127 BAS0128 TRUE 0.998 14 1049.471
 637934 637935 BAS0128 BAS0129 TRUE 0.996 34 1148.791
 637935 637936 BAS0129 BAS0130 TRUE 0.997 0 1234.107
 637936 637937 BAS0130 BAS0131 TRUE 0.971 57 547.267
 637937 637938 BAS0131 BAS0132 TRUE 0.994 0 160.303
 637938 637939 BAS0132 BAS0133 TRUE 0.965 69 147.967
 637939 637940 BAS0133 BAS0134 TRUE 0.973 36 424.353
 637940 637941 BAS0134 BAS0135 TRUE 0.992 22 755.439
 637941 637942 BAS0135 BAS0136 TRUE 0.995 25 1427.018
 637942 637943 BAS0136 BAS0137 TRUE 0.902 181 1385.177
 637943 637944 BAS0137 BAS0138 TRUE 0.983 36 1259.092
 637944 637945 BAS0138 BAS0139 TRUE 0.892 44 52.188
 637945 637946 BAS0139 BAS0140 TRUE 0.993 -24 162.238
 637946 637947 BAS0140 BAS0141 TRUE 0.994 -12 189.469
 637947 637948 BAS0141 BAS0142 TRUE 0.995 15 40.367
 637948 637949 BAS0142 BAS0143 TRUE 0.961 153 73.545
 637949 637950 BAS0143 BAS0144 TRUE 0.996 22 1372.831
 637950 637951 BAS0144 BAS0145 FALSE 0.062 163 -2.313
 637951 637952 BAS0145 BAS0146 TRUE 0.614 67 5.285
 637952 637953 BAS0146 BAS0147 FALSE 0.439 145 2.907
 637957 637958 BAS0151 rRNA-16s-4 FALSE 0.027 252 0
 637958 637959 rRNA-16s-4 rRNA-23s-4 FALSE 0.084 176 0
 637959 637960 rRNA-23s-4 rRNA-5s-4 FALSE 0.189 84 0
 637960 637970 rRNA-5s-4 BAS0153 FALSE 0.001 935 0
 637970 637971 BAS0153 BAS0154 FALSE 0.209 -88 0
 637971 637972 BAS0154 BAS0155 FALSE 0.094 210 -13.855
 637972 637973 BAS0155 BAS0156 FALSE 0.144 249 0.144
 637973 637974 BAS0156 BAS0157 TRUE 0.986 -7 29.76
 637974 637975 BAS0157 BAS0158 TRUE 0.983 -7 9.156
 637975 637976 BAS0158 BAS0159 FALSE 0.017 288 0.152
 637976 637977 BAS0159 BAS0160 TRUE 0.671 13 0.152
 637977 637978 BAS0160 BAS0161 FALSE 0 364 -15.494
 637978 637979 BAS0161 BAS0162 FALSE 0 407 -12.906
 637979 637980 BAS0162 BAS0163 TRUE 0.703 -7 0
 637980 637981 BAS0163 BAS0164 TRUE 0.973 4 0
 637981 637982 BAS0164 BAS0165 TRUE 0.599 120 0
 637982 637983 BAS0165 BAS0166 TRUE 0.552 265 -16.347
 637983 637984 BAS0166 BAS0167 FALSE 0.009 340 -6.696
 637984 637985 BAS0167 BAS0168 FALSE 0.137 119 -0.513
 637986 637987 BAS0169 BAS0170 FALSE 0.03 241 0.129
 637987 637988 BAS0170 BAS0171 TRUE 0.981 0 4.514
 637988 637989 BAS0171 BAS0172 FALSE 0.108 141 0.129
 637989 637990 BAS0172 BAS0173 FALSE 0.216 -90 0.001
 637992 637993 BAS0175 BAS0176 TRUE 0.975 -25 95.662
 637993 637994 BAS0176 BAS0177 TRUE 0.994 13 127.248
 637994 637995 BAS0177 BAS0178 FALSE 0.047 280 0.16
 637996 637997 BAS0179 BAS0180 FALSE 0.304 112 0.28
 637997 637998 BAS0180 BAS0181 TRUE 0.92 -3 2.224
 637998 637999 BAS0181 BAS0182 FALSE 0.104 79 0.302
 637999 638000 BAS0182 BAS0183 FALSE 0.125 128 -0.614
 638000 638001 BAS0183 BAS0184 FALSE 0.004 251 0.337
 638003 638004 BAS0186 BAS0187 TRUE 0.995 17 19.243
 638004 638005 BAS0187 BAS0188 TRUE 0.822 -43 0.375
 638005 638006 BAS0188 BAS0189 TRUE 0.973 -3 0.375
 638006 638007 BAS0189 BAS0190 TRUE 0.961 14 0.375
 638009 638010 BAS0192 BAS0193 FALSE 0.497 19 0.001
 638010 638011 BAS0193 BAS0194 FALSE 0.211 67 0.001
 638012 638013 BAS0195 BAS0196 FALSE 0.025 388 0.302
 638013 638014 BAS0196 BAS0197 FALSE 0.001 392 0.245
 638014 638015 BAS0197 BAS0198 FALSE 0.327 68 -1.404
 638017 638018 BAS0200 BAS0201 FALSE 0.016 287 0.337
 638018 638019 BAS0201 BAS0202 TRUE 0.979 6 1.743
 638019 638020 BAS0202 BAS0203 TRUE 0.59 -15 0
 638023 638024