VIMSS Operon Predictions for Brucella abortus biovar 1 str. 9-941

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 830095 830096 BruAb1_0001 BruAb1_0002 dnaA dnaN TRUE 0.97 229 926.371
 830096 830097 BruAb1_0002 BruAb1_0003 dnaN recF TRUE 0.977 182 955
 830097 830098 BruAb1_0003 BruAb1_0004 recF moeB FALSE 0.025 38 -14.258
 830099 830100 BruAb1_0005 BruAb1_0006 TRUE 0.554 -3 -1.327
 830100 830101 BruAb1_0006 BruAb1_0007 TRUE 0.993 -3 318.684
 830101 830102 BruAb1_0007 BruAb1_0008 TRUE 0.995 0 482.505
 830102 830103 BruAb1_0008 BruAb1_0009 TRUE 0.631 112 14.711
 830103 830104 BruAb1_0009 BruAb1_0010 TRUE 0.954 14 13.668
 830104 830105 BruAb1_0010 BruAb1_0011 FALSE 0.155 231 0.008
 830105 830106 BruAb1_0011 BruAb1_0012 FALSE 0.448 46 0.008
 830106 830107 BruAb1_0012 BruAb1_0013 FALSE 0.469 40 0.008
 830107 830108 BruAb1_0013 BruAb1_0014 FALSE 0.06 265 0
 830110 830111 BruAb1_0016 BruAb1_0017 mvaB TRUE 0.989 -3 67.808
 830111 830112 BruAb1_0017 BruAb1_0018 mvaB TRUE 0.987 -7 185.012
 830112 830113 BruAb1_0018 BruAb1_0019 TRUE 0.991 12 409.664
 830113 830114 BruAb1_0019 BruAb1_0020 ivd TRUE 0.997 0 271.657
 830114 830115 BruAb1_0020 BruAb1_0021 ivd FALSE 0.131 147 0
 830115 830116 BruAb1_0021 BruAb1_0022 FALSE 0.103 185 0
 830116 830117 BruAb1_0022 BruAb1_0023 FALSE 0.044 177 -2.646
 830117 830118 BruAb1_0023 BruAb1_trna_0001 FALSE 0.081 222 0
 830118 830119 BruAb1_trna_0001 BruAb1_0024 FALSE 0.078 226 0
 830120 830121 BruAb1_0025 BruAb1_0026 aroA cmk TRUE 0.994 -3 370.536
 830121 830122 BruAb1_0026 BruAb1_0027 cmk rpsA TRUE 0.927 216 689.529
 830125 830126 BruAb1_0030 BruAb1_0031 FALSE 0.298 36 0
 830126 830127 BruAb1_0031 BruAb1_0032 recR TRUE 0.587 16 -2.179
 830127 830128 BruAb1_0032 BruAb1_0033 recR TRUE 0.968 131 1152.814
 830128 830129 BruAb1_0033 BruAb1_0034 dnaX TRUE 0.982 25 307.793
 830130 830131 BruAb1_0035 BruAb1_0036 TRUE 0.8 29 11.78
 830132 830133 BruAb1_0037 BruAb1_0038 pheA kdsB TRUE 0.818 89 21.303
 830136 830137 BruAb1_0041 BruAb1_0042 cyoA FALSE 0.138 175 0.004
 830137 830138 BruAb1_0042 BruAb1_0043 cyoA qoxB FALSE 0.205 80 0
 830138 830139 BruAb1_0043 BruAb1_0044 qoxB TRUE 0.588 4 0
 830139 830140 BruAb1_0044 BruAb1_0045 qoxD TRUE 0.998 0 472.823
 830142 830143 BruAb1_0047 BruAb1_0048 FALSE 0.027 584 0
 830143 830144 BruAb1_0048 BruAb1_0049 TRUE 0.983 -3 59.233
 830144 830145 BruAb1_0049 BruAb1_0050 FALSE 0.065 145 -1.644
 830146 830147 BruAb1_0051 BruAb1_0052 FALSE 0.31 70 0.005
 830147 830148 BruAb1_0052 BruAb1_0053 FALSE 0.003 338 0.008
 830148 830149 BruAb1_0053 BruAb1_0054 TRUE 0.69 11 0.008
 830149 830150 BruAb1_0054 BruAb1_0055 FALSE 0.268 135 0.008
 830150 830151 BruAb1_0055 BruAb1_0056 FALSE 0.016 221 0.008
 830153 830154 BruAb1_0058 BruAb1_0059 pgm FALSE 0.337 56 0.005
 830154 830155 BruAb1_0059 BruAb1_0060 TRUE 0.532 -25 0.005
 830156 830157 BruAb1_0061 BruAb1_0062 FALSE 0.078 115 -1.587
 830157 830158 BruAb1_0062 BruAb1_0063 FALSE 0.072 100 -5.657
 830158 830159 BruAb1_0063 BruAb1_0064 FALSE 0.265 20 -0.75
 830159 830160 BruAb1_0064 BruAb1_0065 FALSE 0.403 62 0.008
 830160 830161 BruAb1_0065 BruAb1_0066 FALSE 0.233 166 0.008
 830161 830162 BruAb1_0066 BruAb1_0067 TRUE 0.553 15 0.005
 830162 830163 BruAb1_0067 BruAb1_0068 FALSE 0.055 182 -1.345
 830164 830165 BruAb1_0069 BruAb1_0070 dnaE-1 TRUE 0.997 0 292.041
 830165 830166 BruAb1_0070 BruAb1_0071 TRUE 0.912 20 25.704
 830167 830168 BruAb1_0072 BruAb1_0073 FALSE 0.048 209 -1.069
 830171 830172 BruAb1_0076 BruAb1_0077 FALSE 0.226 34 3.321
 830172 830173 BruAb1_0077 BruAb1_0078 FALSE 0.44 260 36.654
 830173 830174 BruAb1_0078 BruAb1_0079 FALSE 0.004 440 5.683
 830174 830175 BruAb1_0079 BruAb1_0080 phhB TRUE 0.602 88 10.376
 830177 830178 BruAb1_0082 BruAb1_0083 FALSE 0.441 181 10.553
 830179 830180 BruAb1_0084 BruAb1_0085 TRUE 0.998 -3 461.215
 830180 830181 BruAb1_0085 BruAb1_0086 FALSE 0.023 234 3.586
 830181 830182 BruAb1_0086 BruAb1_0087 pat FALSE 0.155 115 0
 830183 830184 BruAb1_0088 BruAb1_0089 FALSE 0.004 550 6.255
 830184 830185 BruAb1_0089 BruAb1_0090 acnA FALSE 0.418 277 36.567
 830186 830187 BruAb1_0091 BruAb1_0092 ccmA ccmB TRUE 0.998 0 542.646
 830187 830188 BruAb1_0092 BruAb1_0093 ccmB ccmC TRUE 0.991 58 552.992
 830188 830189 BruAb1_0093 BruAb1_0094 ccmC TRUE 0.909 -3 7.853
 830189 830190 BruAb1_0094 BruAb1_0095 cycY TRUE 0.921 -3 10.657
 830193 830194 BruAb1_0098 BruAb1_0099 TRUE 0.534 0 -0.626
 830194 830195 BruAb1_0099 BruAb1_0100 FALSE 0.017 175 -5.716
 830198 830199 BruAb1_0103 BruAb1_0104 FALSE 0.007 279 -0.9
 830199 830200 BruAb1_0104 BruAb1_0105 TRUE 0.959 95 288.697
 830200 830201 BruAb1_0105 BruAb1_0106 cysW-1 TRUE 0.992 -10 427.052
 830201 830202 BruAb1_0106 BruAb1_0107 cysW-1 TRUE 0.982 98 401.58
 830202 830203 BruAb1_0107 BruAb1_0108 FALSE 0.002 386 -4.529
 830203 830204 BruAb1_0108 BruAb1_0109 pncB FALSE 0.08 90 -5.06
 830205 830206 BruAb1_0110 BruAb1_0111 FALSE 0.096 110 -0.859
 830206 830207 BruAb1_0111 BruAb1_0112 cscK FALSE 0.089 23 -6.169
 830207 830208 BruAb1_0112 BruAb1_0113 cscK FALSE 0.088 91 -5.621
 830208 830209 BruAb1_0113 BruAb1_0114 FALSE 0.047 121 -6.584
 830209 830210 BruAb1_0114 BruAb1_0115 FALSE 0.319 206 0.008
 830210 830211 BruAb1_0115 BruAb1_0116 FALSE 0.426 267 0.008
 830211 830212 BruAb1_0116 BruAb1_0117 FALSE 0.005 232 -8.013
 830212 830213 BruAb1_0117 BruAb1_0118 FALSE 0.041 39 -6.578
 830214 830215 BruAb1_0119 BruAb1_0120 polA FALSE 0.365 82 0.008
 830215 830216 BruAb1_0120 BruAb1_0121 polA FALSE 0.365 142 -14.176
 830217 830218 BruAb1_0122 BruAb1_0123 gyrB FALSE 0.329 60 0.005
 830218 830219 BruAb1_0123 BruAb1_0124 FALSE 0.257 101 0.005
 830219 830220 BruAb1_0124 BruAb1_0125 TRUE 0.532 8 0
 830220 830221 BruAb1_0125 BruAb1_0126 TRUE 0.669 0 0
 830221 830222 BruAb1_0126 BruAb1_0127 FALSE 0.433 0 -5.963
 830222 830223 BruAb1_0127 BruAb1_0128 FALSE 0.306 34 0
 830224 830225 BruAb1_0129 BruAb1_0130 FALSE 0.187 95 0
 830225 830226 BruAb1_0130 BruAb1_0131 FALSE 0.014 92 -7.284
 830226 830227 BruAb1_0131 BruAb1_0132 FALSE 0.479 -13 0
 830227 830228 BruAb1_0132 BruAb1_0133 FALSE 0.099 192 0
 830228 830229 BruAb1_0133 BruAb1_0134 FALSE 0.097 196 0
 830232 830233 BruAb1_0137 BruAb1_0138 TRUE 0.735 109 39.969
 830233 830234 BruAb1_0138 BruAb1_0139 trpS TRUE 0.61 58 8.612
 830234 830235 BruAb1_0139 BruAb1_0140 trpS mviN TRUE 0.736 7 26.563
 830235 830236 BruAb1_0140 BruAb1_0141 mviN TRUE 0.915 14 21.027
 830236 830237 BruAb1_0141 BruAb1_0142 FALSE 0.134 143 0
 830239 830240 BruAb1_0144 BruAb1_0145 lspA FALSE 0.003 323 -17.828
 830240 830241 BruAb1_0145 BruAb1_0146 lspA TRUE 0.923 2 -2.546
 830241 830242 BruAb1_0146 BruAb1_0147 TRUE 0.96 -3 20.77
 830242 830243 BruAb1_0147 BruAb1_0148 FALSE 0.034 113 -0.693
 830243 830244 BruAb1_0148 BruAb1_0149 ihfB TRUE 0.929 10 25.87
 830244 830245 BruAb1_0149 BruAb1_0150 ihfB sppA TRUE 0.83 47 18.413
 830246 830247 BruAb1_0151 BruAb1_0152 FALSE 0.282 324 33.913
 830247 830248 BruAb1_0152 BruAb1_0153 TRUE 0.99 12 440.141
 830248 830249 BruAb1_0153 BruAb1_0154 rpoN TRUE 0.874 296 672.335
 830251 830252 BruAb1_0156 BruAb1_0157 yfiA ptsN TRUE 0.918 103 111.06
 830253 830254 BruAb1_0158 BruAb1_0159 TRUE 0.733 106 23.945
 830254 830255 BruAb1_0159 BruAb1_0160 FALSE 0.279 91 0.005
 830255 830256 BruAb1_0160 BruAb1_0161 TRUE 0.557 -19 0.005
 830258 830259 BruAb1_0163 BruAb1_0164 TRUE 0.688 -3 0.003
 830261 830262 BruAb1_0166 BruAb1_0167 grpE FALSE 0.01 133 -16.778
 830262 830263 BruAb1_0167 BruAb1_0168 grpE hrcA TRUE 0.962 106 502.8
 830264 830265 BruAb1_0169 BruAb1_0170 rph FALSE 0.113 174 0
 830265 830266 BruAb1_0170 BruAb1_0171 TRUE 0.609 3 0
 830266 830267 BruAb1_0171 BruAb1_0172 TRUE 0.995 -3 604.2
 830267 830268 BruAb1_0172 BruAb1_0173 TRUE 0.537 12 -33.305
 830268 830269 BruAb1_0173 BruAb1_0174 TRUE 0.989 -3 114.424
 830269 830270 BruAb1_0174 BruAb1_0175 cysG FALSE 0.006 220 -14.998
 830270 830271 BruAb1_0175 BruAb1_0176 cysG TRUE 0.862 18 23.541
 830271 830272 BruAb1_0176 BruAb1_0177 cysI TRUE 0.934 21 55.067
 830272 830273 BruAb1_0177 BruAb1_0178 cysI cysH TRUE 0.991 -10 555.241
 830273 830274 BruAb1_0178 BruAb1_0179 cysH TRUE 0.717 53 29.274
 830274 830275 BruAb1_0179 BruAb1_0180 FALSE 0.066 68 -3.844
 830279 830280 BruAb1_0184 BruAb1_0185 metH FALSE 0.003 321 -11.378
 830280 830281 BruAb1_0185 BruAb1_0186 FALSE 0.044 115 -7.699
 830283 830284 BruAb1_0188 BruAb1_0189 cysD cysNC TRUE 0.995 0 259.78
 830284 830285 BruAb1_0189 BruAb1_0190 cysNC cysQ TRUE 0.925 48 28.841
 830285 830286 BruAb1_0190 BruAb1_trna_0002 cysQ FALSE 0.141 133 0
 830288 830289 BruAb1_0192 BruAb1_0193 FALSE 0.46 -25 0.001
 830289 830290 BruAb1_0193 BruAb1_0194 glpR FALSE 0.124 222 0.005
 830290 830291 BruAb1_0194 BruAb1_0195 glpR glpD TRUE 0.903 82 67.409
 830291 830292 BruAb1_0195 BruAb1_0196 glpD FALSE 0.032 219 -3.225
 830292 830293 BruAb1_0196 BruAb1_0197 FALSE 0.128 149 0
 830293 830294 BruAb1_0197 BruAb1_0198 FALSE 0.03 481 0
 830294 830295 BruAb1_0198 BruAb1_0199 FALSE 0.484 64 11.313
 830295 830296 BruAb1_0199 BruAb1_0200 FALSE 0.164 26 -3.023
 830300 830301 BruAb1_0204 BruAb1_0205 TRUE 0.585 13 0.005
 830302 830303 BruAb1_0206 BruAb1_0207 TRUE 0.911 -3 54.669
 830303 830304 BruAb1_0207 BruAb1_0208 TRUE 0.988 -3 85.472
 830304 830305 BruAb1_0208 BruAb1_0209 TRUE 0.709 24 18.968
 830305 830306 BruAb1_0209 BruAb1_0210 thiG TRUE 0.992 -3 221.645
 830306 830307 BruAb1_0210 BruAb1_0211 thiG TRUE 0.996 2 616.14
 830307 830308 BruAb1_0211 BruAb1_0212 TRUE 0.991 -3 210.427
 830308 830309 BruAb1_0212 BruAb1_0213 thiD TRUE 0.966 0 7.806
 830310 830311 BruAb1_0214 BruAb1_0215 FALSE 0.136 99 -2.537
 830312 830313 BruAb1_0216 BruAb1_0217 FALSE 0.082 106 -4.991
 830313 830314 BruAb1_0217 BruAb1_0218 TRUE 0.996 -3 233.579
 830314 830315 BruAb1_0218 BruAb1_0219 TRUE 0.995 -3 218.328
 830315 830316 BruAb1_0219 BruAb1_0220 TRUE 0.922 73 198.948
 830316 830317 BruAb1_0220 BruAb1_0221 FALSE 0.049 186 -1.783
 830317 830318 BruAb1_0221 BruAb1_0222 FALSE 0.003 304 -1.247
 830319 830320 BruAb1_0223 BruAb1_0224 soxB FALSE 0.401 -31 0
 830320 830321 BruAb1_0224 BruAb1_0225 soxB soxD FALSE 0.404 19 0
 830321 830322 BruAb1_0225 BruAb1_0226 soxD soxA TRUE 0.669 0 0
 830322 830323 BruAb1_0226 BruAb1_0227 soxA soxG FALSE 0.496 11 0
 830324 830325 BruAb1_0228 BruAb1_0229 TRUE 0.675 58 2.374
 830326 830327 BruAb1_0230 BruAb1_0231 TRUE 0.901 61 13.93
 830327 830328 BruAb1_0231 BruAb1_0232 TRUE 0.996 3 160.258
 830328 830329 BruAb1_0232 BruAb1_0233 TRUE 0.958 8 12.036
 830329 830330 BruAb1_0233 BruAb1_0234 TRUE 0.579 3 -1.278
 830330 830331 BruAb1_0234 BruAb1_0235 TRUE 0.931 -3 6.554
 830331 830332 BruAb1_0235 BruAb1_0236 TRUE 0.804 -7 2.44
 830332 830333 BruAb1_0236 BruAb1_0237 TRUE 0.714 3 0.005
 830333 830334 BruAb1_0237 BruAb1_0238 TRUE 0.696 4 0.005
 830334 830335 BruAb1_0238 BruAb1_0239 TRUE 0.968 41 132.139
 830335 830336 BruAb1_0239 BruAb1_0240 TRUE 0.958 14 74.493
 830337 830338 BruAb1_0241 BruAb1_0242 FALSE 0.345 35 0.003
 830341 830342 BruAb1_0245 BruAb1_0246 TRUE 0.645 -3 0
 830342 830343 BruAb1_0246 BruAb1_0247 FALSE 0.221 68 0
 830343 830344 BruAb1_0247 BruAb1_0248 TRUE 0.72 1 0.004
 830344 830345 BruAb1_0248 BruAb1_0249 TRUE 0.713 -3 0.004
 830345 830346 BruAb1_0249 BruAb1_0250 TRUE 0.713 -3 0.004
 830346 830347 BruAb1_0250 BruAb1_0251 TRUE 0.645 -3 0
 830347 830348 BruAb1_0251 BruAb1_0252 FALSE 0.128 149 0
 830348 830349 BruAb1_0252 BruAb1_0253 FALSE 0.124 154 0
 830349 830350 BruAb1_0253 BruAb1_0254 FALSE 0.226 102 0.004
 830350 830351 BruAb1_0254 BruAb1_0255 flgJ FALSE 0.123 201 0.004
 830351 830352 BruAb1_0255 BruAb1_0256 flgJ FALSE 0.127 150 0
 830352 830353 BruAb1_0256 BruAb1_0257 FALSE 0.093 201 0
 830353 830354 BruAb1_0257 BruAb1_0258 FALSE 0.339 42