VIMSS Operon Predictions for Burkholderia xenovorans

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 686665 686666 TRUE 0.992 0 157.194
 686666 686667 TRUE 0.986 -10 57.706
 686668 686669 FALSE 0.084 371 2.622
 686669 686670 TRUE 0.999 4 310.958
 686670 686671 TRUE 0.999 0 411.685
 686671 686672 TRUE 0.999 1 337.87
 686672 686673 FALSE 0.001 659 -3.118
 686675 686676 TRUE 0.987 -3 15.274
 686676 686677 TRUE 0.985 -3 13.405
 686677 686678 TRUE 0.626 83 9.309
 686678 686679 TRUE 0.995 6 86.335
 1023562 686681 FALSE 0.236 109 0
 686683 686684 TRUE 0.708 99 9.467
 686684 686685 FALSE 0.29 143 0.08
 686685 686686 FALSE 0.013 420 0
 686686 686687 FALSE 0.002 938 0
 686687 686688 TRUE 0.999 -7 298.717
 686688 686689 TRUE 0.948 8 8.566
 686689 686690 TRUE 0.661 104 9.446
 686690 686691 FALSE 0.001 636 -2.568
 686693 686694 FALSE 0.413 28 0
 686696 686697 TRUE 0.909 29 56.028
 686698 686699 FALSE 0.009 188 -7.553
 686699 686700 TRUE 0.989 52 457.202
 686704 686705 TRUE 0.999 0 10.403
 686705 686706 TRUE 0.995 5 159.103
 686706 686707 TRUE 0.834 59 7.912
 686708 686709 TRUE 0.994 -15 86.966
 686709 686710 TRUE 0.997 43 479.303
 686710 686711 TRUE 0.926 37 10.311
 686711 686712 TRUE 0.998 -3 30.43
 686712 686713 TRUE 0.972 28 24.805
 686714 686715 TRUE 0.972 -3 11.845
 686715 1023570 FALSE 0.134 186 0
 1023570 686716 TRUE 0.647 -15 0
 686716 1023571 FALSE 0.298 68 0
 686717 1023574 FALSE 0.429 -261 0
 1023576 1023583 FALSE 0.013 474 3.111
 686718 1023590 FALSE 0.255 101 -0.827
 1023590 686719 TRUE 0.807 -15 0.16
 686719 686720 FALSE 0.174 154 0
 686720 686721 FALSE 0.357 37 0
 686723 1027417 FALSE 0.034 287 0
 1027418 686724 FALSE 0.159 169 0
 686725 686726 TRUE 0.837 -3 0
 686726 686727 FALSE 0.275 78 -0.052
 686727 686728 FALSE 0.131 29 -1.694
 686728 686729 FALSE 0.12 187 -0.397
 686729 686730 FALSE 0.305 53 0
 686730 686731 FALSE 0.311 50 0
 686731 686732 TRUE 0.722 68 -0.449
 686734 686735 FALSE 0.075 142 -0.858
 686735 1029365 pseudo FALSE 0.006 552 0
 1029365 686736 pseudo FALSE 0.171 157 0
 686737 1027419 TRUE 0.791 3 0
 1027419 686738 FALSE 0.179 131 0
 686738 686739 TRUE 0.959 -3 3.015
 686742 686743 FALSE 0.003 936 0
 686743 686744 TRUE 0.937 15 12.438
 686744 686745 TRUE 0.957 14 2.083
 686745 686746 TRUE 0.754 11 1.604
 686746 686747 FALSE 0.345 79 1.604
 686747 686748 FALSE 0.254 118 1.604
 686748 1023621 TRUE 0.868 -3 1.604
 1023621 686749 TRUE 0.979 -3 1.604
 686749 686750 TRUE 0.935 6 4.068
 686750 686751 TRUE 0.943 11 3.982
 686751 686752 TRUE 0.941 11 2.914
 686752 686753 FALSE 0.458 33 1.604
 686753 686754 FALSE 0.02 411 -0.224
 686754 686755 FALSE 0.302 92 -0.268
 686755 686756 TRUE 0.835 0 0
 686756 686757 FALSE 0.314 57 0
 686757 686758 FALSE 0.256 51 0.492
 686758 686759 FALSE 0.194 49 0.86
 686767 686768 FALSE 0.055 147 -11.285
 1023536 686770 FALSE 0.116 201 0
 686770 686771 FALSE 0.001 421 -2.484
 686771 686772 TRUE 0.991 40 934.835
 686772 686773 TRUE 0.98 -3 25.884
 686773 686774 TRUE 0.982 -3 26.427
 686774 686775 TRUE 1 -3 437.244
 686775 686776 TRUE 1 -3 840.09
 686776 686777 TRUE 0.999 18 908.641
 686777 686778 TRUE 0.999 27 1030.105
 686778 686779 TRUE 0.999 -3 814.914
 686779 686780 TRUE 0.999 -3 915.247
 686780 686781 TRUE 1 -3 852.122
 686781 686782 TRUE 1 6 335.031
 686782 686783 TRUE 0.996 25 260.395
 686783 686784 TRUE 0.987 28 320.445
 686784 686785 TRUE 0.992 151 735.779
 686785 686786 FALSE 0.017 252 2.64
 686786 686787 FALSE 0.165 288 -1.2
 686789 686790 TRUE 0.977 81 136.243
 686790 686791 TRUE 0.923 55 17.847
 686791 686792 TRUE 0.924 -45 21.184
 686793 686794 TRUE 0.868 194 201.974
 686794 686795 TRUE 0.997 4 181.885
 686795 686796 TRUE 0.995 28 182.043
 686796 686797 TRUE 0.996 -3 22.802
 686797 686798 TRUE 0.583 131 9.144
 686798 1028173 tRNA-Pro FALSE 0.038 290 0
 1028173 686799 tRNA-Pro FALSE 0.328 49 0
 686800 686801 TRUE 0.999 26 1240.824
 686801 686802 TRUE 0.936 236 638.328
 686802 686803 TRUE 0.986 72 364.15
 686804 686805 TRUE 0.709 78 11.073
 686806 686807 TRUE 0.872 13 -10.526
 686808 686809 TRUE 0.603 155 -30.414
 686810 686811 FALSE 0.005 222 -0.44
 686812 686813 FALSE 0.462 609 216.302
 686813 686814 FALSE 0.001 444 16.161
 686815 686816 TRUE 0.846 27 19.181
 686816 686817 TRUE 0.761 95 6.493
 686817 686818 TRUE 0.659 74 4.181
 686818 686819 TRUE 0.938 49 50.614
 686819 686820 TRUE 0.997 4 88.488
 686820 686821 TRUE 0.997 112 968.784
 686821 686822 TRUE 0.977 70 228.495
 686822 686823 TRUE 0.523 195 19.308
 686825 686826 TRUE 0.978 -3 -1.138
 686826 686827 TRUE 0.538 176 17.923
 686827 686828 FALSE 0.412 -3 24.041
 686828 686829 TRUE 0.912 50 31.634
 686832 686833 TRUE 0.665 28 0
 686833 686834 TRUE 0.537 -67 0
 686834 686835 FALSE 0.35 -58 -0.507
 686836 686837 FALSE 0.004 675 -0.11
 686838 686839 FALSE 0.095 110 -3.634
 686841 686842 FALSE 0.005 591 0
 686842 1027420 FALSE 0.366 29 0
 1027420 686843 TRUE 0.953 9 0
 1027421 686845 FALSE 0.13 195 0
 686848 686849 TRUE 0.974 -28 61.728
 686849 686850 TRUE 0.995 10 88.203
 686850 686851 TRUE 0.994 11 74.998
 686851 686852 TRUE 0.603 97 41.808
 686852 686853 TRUE 0.999 -12 402.96
 686853 686854 TRUE 0.999 4 414.598
 686854 686855 TRUE 0.99 163 319.447
 686855 686856 TRUE 1 -3 357.425
 686856 686857 TRUE 1 -3 292.39
 686857 686858 TRUE 0.996 -10 97.735
 686858 686859 TRUE 0.997 -3 47.196
 686859 686860 FALSE 0.002 1595 -0.158
 686860 686861 TRUE 0.532 75 0
 686861 686862 TRUE 0.853 31 1.825
 686862 686863 TRUE 0.95 10 0
 686863 686864 FALSE 0.313 58 0
 686864 686865 FALSE 0.236 109 0
 686865 686866 FALSE 0.004 270 -14.053
 686866 686867 TRUE 0.603 53 2.9
 1023522 686872 TRUE 0.856 -3 0
 686872 686873 FALSE 0.056 265 0
 686873 686874 FALSE 0.243 113 0
 686874 686875 FALSE 0.036 300 0
 686876 1027422 TRUE 0.727 39 0.739
 1027422 1027423 TRUE 0.989 6 22.422
 1027423 686877 TRUE 0.997 -3 60.629
 686877 686878 TRUE 0.909 2 16.826
 686878 686879 FALSE 0.271 81 -0.18
 686879 686880 FALSE 0.342 32 0
 686882 686883 FALSE 0.005 617 0
 686885 686886 FALSE 0.013 417 0
 686887 686888 TRUE 0.802 -19 -0.246
 686890 686891 FALSE 0.01 476 0
 686891 686892 TRUE 0.603 -28 0
 686893 686894 TRUE 0.968 22 42.069
 686894 686895 FALSE 0.108 202 0
 1023592 686896 FALSE 0.008 477 0
 686896 686897 FALSE 0.229 113 0
 686898 686899 FALSE 0.214 106 0
 686899 686900 FALSE 0.217 107 -0.024
 686900 686901 TRUE 0.749 -58 1.015
 686901 686902 TRUE 0.519 -10 -0.509
 686902 686903 TRUE 0.733 59 -0.509
 686903 686904 TRUE 0.985 -3 1.015
 686904 686905 TRUE 0.643 144 0
 686916 686917 TRUE 0.75 79 0
 686917 686918 TRUE 0.828 50 0
 686918 686919 FALSE 0.017 957 -0.035
 686919 686920 TRUE 0.986 4 6.448
 686921 1023546 TRUE 0.974 -3 2.889
 1023546 686922 FALSE 0.111 212 -0.121
 686922 686923 FALSE 0.007 537 0
 686923 686924 FALSE 0.003 794 0
 686924 686925 FALSE 0.177 150 0
 686925 686926 FALSE 0.024 347 0
 686926 686927 TRUE 0.966 -3 13.687
 686927 686928 TRUE 0.918 -3 1.712
 686931 686932