VIMSS Operon Predictions for Burkholderia vietnamiensis G4

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 2299762 2299763 Bcep1808DRAFT_7355 Bcep1808DRAFT_7356 TRUE 0.654 5 0
 2299763 2299764 Bcep1808DRAFT_7356 Bcep1808DRAFT_7633 FALSE 0.234 -1083 0
 2299764 2299765 Bcep1808DRAFT_7633 Bcep1808DRAFT_7357 TRUE 0.799 -3 8.328
 2299765 2299766 Bcep1808DRAFT_7357 Bcep1808DRAFT_7358 TRUE 0.89 -10 21.023
 2299766 2299767 Bcep1808DRAFT_7358 Bcep1808DRAFT_7359 TRUE 0.765 -22 16.21
 2299767 2299768 Bcep1808DRAFT_7359 Bcep1808DRAFT_7360 TRUE 0.847 35 16.58
 2299770 2299771 Bcep1808DRAFT_7362 Bcep1808DRAFT_7363 TRUE 0.814 44 6.726
 2299771 2299772 Bcep1808DRAFT_7363 Bcep1808DRAFT_7364 TRUE 0.984 -3 13.906
 2299773 2299774 Bcep1808DRAFT_7365 Bcep1808DRAFT_7366 FALSE 0.001 306 -18.007
 2299776 2299777 Bcep1808DRAFT_7634 Bcep1808DRAFT_7368 FALSE 0.055 201 0
 2299777 2299778 Bcep1808DRAFT_7368 Bcep1808DRAFT_7369 FALSE 0.001 259 0.54
 2299779 2299780 Bcep1808DRAFT_7370 Bcep1808DRAFT_7371 FALSE 0.024 180 -0.983
 2299780 2299781 Bcep1808DRAFT_7371 Bcep1808DRAFT_7372 FALSE 0.473 168 -34.043
 2299787 2299788 Bcep1808DRAFT_7377 Bcep1808DRAFT_7378 FALSE 0 483 -1.156
 2299788 2299789 Bcep1808DRAFT_7378 Bcep1808DRAFT_7379 TRUE 0.96 -7 42.068
 2299789 2299790 Bcep1808DRAFT_7379 Bcep1808DRAFT_7380 TRUE 0.871 19 25.939
 2299790 2299791 Bcep1808DRAFT_7380 Bcep1808DRAFT_7381 TRUE 0.89 11 28.296
 2299792 2299793 Bcep1808DRAFT_7382 Bcep1808DRAFT_7383 FALSE 0.004 186 1.112
 2299793 2299794 Bcep1808DRAFT_7383 Bcep1808DRAFT_7384 TRUE 0.942 -10 20.139
 2299794 2299795 Bcep1808DRAFT_7384 Bcep1808DRAFT_7385 FALSE 0.487 -25 0.481
 2299795 2299796 Bcep1808DRAFT_7385 Bcep1808DRAFT_7386 FALSE 0.001 264 -10.832
 2299796 2299797 Bcep1808DRAFT_7386 Bcep1808DRAFT_7636 TRUE 0.582 13 0
 2299797 2299798 Bcep1808DRAFT_7636 Bcep1808DRAFT_7637 FALSE 0.128 151 0
 2299799 2299800 Bcep1808DRAFT_7387 Bcep1808DRAFT_7388 TRUE 0.953 -7 31.215
 2299800 2299801 Bcep1808DRAFT_7388 Bcep1808DRAFT_7389 TRUE 0.967 47 164.104
 2299801 2299802 Bcep1808DRAFT_7389 Bcep1808DRAFT_7390 TRUE 0.882 32 17.141
 2299806 2299807 Bcep1808DRAFT_7393 Bcep1808DRAFT_7394 FALSE 0.012 311 0.481
 2299807 2299808 Bcep1808DRAFT_7394 Bcep1808DRAFT_7395 FALSE 0.164 278 0.403
 2299808 2299809 Bcep1808DRAFT_7395 Bcep1808DRAFT_7396 FALSE 0.088 271 -54.245
 2299810 2299811 Bcep1808DRAFT_7397 Bcep1808DRAFT_7398 TRUE 0.916 78 51.731
 2299812 2299813 Bcep1808DRAFT_7399 Bcep1808DRAFT_7400 FALSE 0.059 400 0.452
 2299817 2299818 Bcep1808DRAFT_7404 Bcep1808DRAFT_7405 TRUE 0.695 54 6.414
 2299820 2299821 Bcep1808DRAFT_7407 Bcep1808DRAFT_7408 FALSE 0.171 208 1.769
 2299824 2299825 Bcep1808DRAFT_7411 Bcep1808DRAFT_7412 TRUE 0.626 30 0.38
 2299825 2299826 Bcep1808DRAFT_7412 Bcep1808DRAFT_7413 TRUE 0.709 16 0.38
 2299826 2299827 Bcep1808DRAFT_7413 Bcep1808DRAFT_7414 TRUE 0.569 122 -6.341
 2299827 2299828 Bcep1808DRAFT_7414 Bcep1808DRAFT_7415 FALSE 0.37 65 -35.117
 2299830 2299831 Bcep1808DRAFT_7417 Bcep1808DRAFT_7418 FALSE 0 403 0.462
 2299831 2299832 Bcep1808DRAFT_7418 Bcep1808DRAFT_7419 FALSE 0.007 197 -3.749
 2299833 2299834 Bcep1808DRAFT_7631 Bcep1808DRAFT_7420 FALSE 0.065 191 0
 2299834 2299835 Bcep1808DRAFT_7420 Bcep1808DRAFT_7638 FALSE 0.217 -330 0
 2299835 2299836 Bcep1808DRAFT_7638 Bcep1808DRAFT_7421 FALSE 0.4 45 0
 2299836 2299837 Bcep1808DRAFT_7421 Bcep1808DRAFT_7422 TRUE 0.633 -7 16.868
 2299837 2299838 Bcep1808DRAFT_7422 Bcep1808DRAFT_7423 TRUE 0.731 -3 20.318
 2299838 2299839 Bcep1808DRAFT_7423 Bcep1808DRAFT_7639 FALSE 0.136 148 0
 2299841 2299842 Bcep1808DRAFT_7425 Bcep1808DRAFT_7426 FALSE 0.295 128 0.452
 2299842 2299843 Bcep1808DRAFT_7426 Bcep1808DRAFT_7427 FALSE 0.491 -22 0.452
 2299844 2299845 Bcep1808DRAFT_7428 Bcep1808DRAFT_7429 FALSE 0.387 131 5.345
 2299845 2299846 Bcep1808DRAFT_7429 Bcep1808DRAFT_7430 FALSE 0.057 257 -23.128
 2299848 2299849 Bcep1808DRAFT_7432 Bcep1808DRAFT_7433 FALSE 0.099 220 2.272
 2299849 2299850 Bcep1808DRAFT_7433 Bcep1808DRAFT_7434 FALSE 0.066 17 5.736
 2299850 2299851 Bcep1808DRAFT_7434 Bcep1808DRAFT_7435 FALSE 0.027 72 -22.759
 2299852 2299853 Bcep1808DRAFT_7436 Bcep1808DRAFT_7630 FALSE 0.345 -18 0
 2299855 2299856 Bcep1808DRAFT_7438 Bcep1808DRAFT_7439 FALSE 0 604 -1.745
 2299856 2299857 Bcep1808DRAFT_7439 Bcep1808DRAFT_7640 FALSE 0.24 106 0
 2299857 2299858 Bcep1808DRAFT_7640 Bcep1808DRAFT_7440 FALSE 0.184 125 0
 2299858 2299859 Bcep1808DRAFT_7440 Bcep1808DRAFT_7441 FALSE 0.041 255 0.481
 2299863 2299864 Bcep1808DRAFT_7445 Bcep1808DRAFT_7446 FALSE 0.119 42 -2.139
 2299865 2299866 Bcep1808DRAFT_7447 Bcep1808DRAFT_7448 FALSE 0.01 139 -25.903
 2299868 2299869 Bcep1808DRAFT_7450 Bcep1808DRAFT_7451 FALSE 0 397 -0.06
 2299873 2299874 Bcep1808DRAFT_7455 Bcep1808DRAFT_7456 TRUE 0.992 30 140.775
 2299874 2299875 Bcep1808DRAFT_7456 Bcep1808DRAFT_7457 TRUE 0.575 -28 2.701
 2299876 2299877 Bcep1808DRAFT_7458 Bcep1808DRAFT_7459 TRUE 0.669 -22 5.042
 2299877 2299878 Bcep1808DRAFT_7459 Bcep1808DRAFT_7460 TRUE 0.963 11 15.727
 2299878 2299879 Bcep1808DRAFT_7460 Bcep1808DRAFT_7461 TRUE 0.835 27 9.314
 2299879 2299880 Bcep1808DRAFT_7461 Bcep1808DRAFT_7462 TRUE 0.968 8 6.629
 2299884 2299885 Bcep1808DRAFT_7466 Bcep1808DRAFT_7467 FALSE 0.314 153 3.594
 2299886 2299887 Bcep1808DRAFT_7468 Bcep1808DRAFT_7622 FALSE 0.336 -21 0
 2299890 2299891 Bcep1808DRAFT_7470 Bcep1808DRAFT_7629 FALSE 0 557 1.987
 2299894 2299895 Bcep1808DRAFT_7473 Bcep1808DRAFT_7642 TRUE 0.517 -3 0
 2299896 2299897 Bcep1808DRAFT_7474 Bcep1808DRAFT_7475 FALSE 0.013 290 0
 2299897 2299898 Bcep1808DRAFT_7475 Bcep1808DRAFT_7476 FALSE 0.099 166 0
 2299898 2299899 Bcep1808DRAFT_7476 Bcep1808DRAFT_7628 FALSE 0.421 40 0
 2299899 2299900 Bcep1808DRAFT_7628 Bcep1808DRAFT_7477 FALSE 0.257 -84 0
 2299900 2299901 Bcep1808DRAFT_7477 Bcep1808DRAFT_7478 TRUE 0.973 27 106.167
 2299901 2299902 Bcep1808DRAFT_7478 Bcep1808DRAFT_7479 TRUE 0.979 82 95.173
 2299902 2299903 Bcep1808DRAFT_7479 Bcep1808DRAFT_7480 TRUE 0.955 49 161.59
 2299906 2299907 Bcep1808DRAFT_7483 Bcep1808DRAFT_7484 FALSE 0.001 253 -12.444
 2299908 2299909 Bcep1808DRAFT_7643 Bcep1808DRAFT_7485 FALSE 0.421 40 0
 2299911 2299912 Bcep1808DRAFT_7486 Bcep1808DRAFT_7645 FALSE 0.079 103 -0.703
 2299912 2299913 Bcep1808DRAFT_7645 Bcep1808DRAFT_7487 TRUE 0.534 47 0.269
 2299913 2299914 Bcep1808DRAFT_7487 Bcep1808DRAFT_7488 FALSE 0.029 67 2.646
 2299915 2299916 Bcep1808DRAFT_7489 Bcep1808DRAFT_7490 FALSE 0.251 103 0
 2299918 2299919 Bcep1808DRAFT_7646 Bcep1808DRAFT_7492 FALSE 0.103 164 0
 2299919 2299920 Bcep1808DRAFT_7492 Bcep1808DRAFT_7493 FALSE 0.324 74 0
 2299920 2299921 Bcep1808DRAFT_7493 Bcep1808DRAFT_7494 FALSE 0.342 67 0
 2299921 2299922 Bcep1808DRAFT_7494 Bcep1808DRAFT_7495 FALSE 0.341 -19 0
 2299922 2299923 Bcep1808DRAFT_7495 Bcep1808DRAFT_7496 FALSE 0.002 236 -12.507
 2299923 2299924 Bcep1808DRAFT_7496 Bcep1808DRAFT_7497 FALSE 0.333 163 7.967
 2299925 2299926 Bcep1808DRAFT_7498 Bcep1808DRAFT_7499 FALSE 0.279 196 6.673
 2299926 2299927 Bcep1808DRAFT_7499 Bcep1808DRAFT_7500 TRUE 0.997 -3 172.942
 2299927 2299928 Bcep1808DRAFT_7500 Bcep1808DRAFT_7501 TRUE 0.994 2 159.739
 2299928 2299929 Bcep1808DRAFT_7501 Bcep1808DRAFT_7502 TRUE 0.995 14 161.87
 2299929 2299930 Bcep1808DRAFT_7502 Bcep1808DRAFT_7503 TRUE 0.995 12 146.223
 2299930 2299931 Bcep1808DRAFT_7503 Bcep1808DRAFT_7504 FALSE 0.355 179 -3.847
 2299931 2299932 Bcep1808DRAFT_7504 Bcep1808DRAFT_7647 FALSE 0.35 -16 0
 2299933 2299934 Bcep1808DRAFT_7505 Bcep1808DRAFT_7623 TRUE 0.65 23 0.125
 2299935 2299936 Bcep1808DRAFT_7506 Bcep1808DRAFT_7507 FALSE 0 358 -3.16
 2299936 2299937 Bcep1808DRAFT_7507 Bcep1808DRAFT_7508 TRUE 0.792 13 -21.606
 2299938 2299939 Bcep1808DRAFT_7509 Bcep1808DRAFT_7510 FALSE 0.488 109 3.83
 2299941 2299942 Bcep1808DRAFT_7512 Bcep1808DRAFT_7513 TRUE 0.97 13 33.471
 2299944 2299945 Bcep1808DRAFT_7515 Bcep1808DRAFT_7516 FALSE 0.276 94 0
 2299946 2299947 Bcep1808DRAFT_7517 Bcep1808DRAFT_7518 FALSE 0.004 196 -23.559
 2299947 2299948 Bcep1808DRAFT_7518 Bcep1808DRAFT_7519 TRUE 0.971 13 96.119
 2299948 2299949 Bcep1808DRAFT_7519 Bcep1808DRAFT_7520 FALSE 0.001 267 -18.157
 2299949 2299950 Bcep1808DRAFT_7520 Bcep1808DRAFT_7648 TRUE 0.517 -3 0
 2299950 2299951 Bcep1808DRAFT_7648 Bcep1808DRAFT_7521 FALSE 0.215 113 0
 2299951 2299952 Bcep1808DRAFT_7521 Bcep1808DRAFT_7522 FALSE 0.013 176 -2.861
 2299952 2299953 Bcep1808DRAFT_7522 Bcep1808DRAFT_7523 FALSE 0.47 30 0
 2299953 2299954 Bcep1808DRAFT_7523 Bcep1808DRAFT_7524 FALSE 0.146 143 0
 2299956 2299957 Bcep1808DRAFT_R0002 Bcep1808DRAFT_7525 FALSE 0.345 66 0
 2299957 2299958 Bcep1808DRAFT_7525 Bcep1808DRAFT_7526 TRUE 0.778 -3 3.492
 2299958 2299959 Bcep1808DRAFT_7526 Bcep1808DRAFT_7527 TRUE 0.952 18 26.567
 2299959 2299960 Bcep1808DRAFT_7527 Bcep1808DRAFT_7627 TRUE 0.775 127 37.989
 2299963 2299964 Bcep1808DRAFT_7530 Bcep1808DRAFT_7531 TRUE 0.881 -3 9.432
 2299964 2299965 Bcep1808DRAFT_7531 Bcep1808DRAFT_7532 TRUE 0.757 80 8.377
 2299966 2299967 Bcep1808DRAFT_7533 Bcep1808DRAFT_7534 FALSE 0.166 180 3.086
 2299967 2299968 Bcep1808DRAFT_7534 Bcep1808DRAFT_7535 FALSE 0 348 1.191
 2299970 2299971 Bcep1808DRAFT_7537 Bcep1808DRAFT_7650 FALSE 0.084 176 0
 2299971 2299972 Bcep1808DRAFT_7650 Bcep1808DRAFT_7538 FALSE 0.348 64 0
 2299973 2299974 Bcep1808DRAFT_7539 Bcep1808DRAFT_7540 TRUE 0.658 79 4.386
 2299975 2299976 Bcep1808DRAFT_7541 Bcep1808DRAFT_7542 TRUE 0.909 25 -3.301
 2299976 2299977 Bcep1808DRAFT_7542 Bcep1808DRAFT_7543 TRUE 0.507 168 -12.433
 2299977 2299978 Bcep1808DRAFT_7543 Bcep1808DRAFT_7544 FALSE 0.001 245 -36.293
 2299978 2299979 Bcep1808DRAFT_7544 Bcep1808DRAFT_7545 TRUE 0.971 23 110.709
 2299979 2299980 Bcep1808DRAFT_7545 Bcep1808DRAFT_7546 TRUE 0.904 -7 26.129
 2299980 2299981 Bcep1808DRAFT_7546 Bcep1808DRAFT_7547 TRUE 0.988 -3 34.504
 2299981 2299982 Bcep1808DRAFT_7547 Bcep1808DRAFT_7548 TRUE 0.997 -3 228.603
 2299982 2299983 Bcep1808DRAFT_7548 Bcep1808DRAFT_7549 FALSE 0.002 499 -26.754
 2299983 2299984 Bcep1808DRAFT_7549 Bcep1808DRAFT_7651 FALSE 0 350 -0.489
 2299984 2299985 Bcep1808DRAFT_7651 Bcep1808DRAFT_7550 TRUE 0.847 17 6.817
 2299985 2299986 Bcep1808DRAFT_7550 Bcep1808DRAFT_7551 TRUE 0.936 17 13.416
 2299986 2299987 Bcep1808DRAFT_7551 Bcep1808DRAFT_7552 FALSE 0.033 313 8.564
 2299987 2299988 Bcep1808DRAFT_7552 Bcep1808DRAFT_7553 TRUE 0.994 2 183.531
 2299988 2299989 Bcep1808DRAFT_7553 Bcep1808DRAFT_7554 TRUE 0.969 68 55.035
 2299989 2299990 Bcep1808DRAFT_7554 Bcep1808DRAFT_7555 TRUE 0.993 6 41.636
 2299990 2299991 Bcep1808DRAFT_7555 Bcep1808DRAFT_7556 TRUE 0.99 0 28.452
 2299991 2299992 Bcep1808DRAFT_7556 Bcep1808DRAFT_7557 TRUE 0.985 4 2.668
 2299992 2299993 Bcep1808DRAFT_7557 Bcep1808DRAFT_7558 TRUE 0.983 38 7.805
 2299993 2299994 Bcep1808DRAFT_7558 Bcep1808DRAFT_7559 TRUE 0.994 31 126.724
 2299994 2299995 Bcep1808DRAFT_7559 Bcep1808DRAFT_7652 TRUE 0.991 34 60.277
 2299995 2299996 Bcep1808DRAFT_7652 Bcep1808DRAFT_7560 TRUE 0.78 24 -1.518
 2299996 2299997 Bcep1808DRAFT_7560 Bcep1808DRAFT_7561 TRUE 0.996 14 172.106
 2299997 2299998 Bcep1808DRAFT_7561 Bcep1808DRAFT_7562 TRUE 0.571 180 92.305
 2299998 2299999 Bcep1808DRAFT_7562 Bcep1808DRAFT_7563 TRUE 0.95 95 97.173
 2300000 2300001 Bcep1808DRAFT_7564 Bcep1808DRAFT_7565 FALSE 0.002 387 0
 2300001 2300002 Bcep1808DRAFT_7565 Bcep1808DRAFT_7566 FALSE 0.401 131 6.982
 2300002 2300003 Bcep1808DRAFT_7566 Bcep1808DRAFT_7567 FALSE 0 712 -14.834
 2300003 2300004 Bcep1808DRAFT_7567 Bcep1808DRAFT_7568 TRUE 0.736 11 0.134
 2300004 2300005 Bcep1808DRAFT_7568 Bcep1808DRAFT_7569 FALSE 0 338 6.732
 2300006 2300007 Bcep1808DRAFT_7570 Bcep1808DRAFT_7571 FALSE 0.011 161 -5.339
 2300009 2300010 Bcep1808DRAFT_7653 Bcep1808DRAFT_7572 FALSE 0.292 -46 0
 2300010 2300011 Bcep1808DRAFT_7572 Bcep1808DRAFT_7654 FALSE 0.12 155 0
 2300013 2300014 Bcep1808DRAFT_7573 Bcep1808DRAFT_7656 FALSE 0.377 51 0
 2300014 2300015 Bcep1808DRAFT_7656 Bcep1808DRAFT_7657 FALSE 0.103 164 0
 2300015 2300016 Bcep1808DRAFT_7657 Bcep1808DRAFT_7658 FALSE 0.156 138 0
 2300017 2300018 Bcep1808DRAFT_7659 Bcep1808DRAFT_7660 TRUE 0.517 -3 0
 2300018 2300019 Bcep1808DRAFT_7660 Bcep1808DRAFT_7661 FALSE 0.039 219 0
 2300019 2300020 Bcep1808DRAFT_7661 Bcep1808DRAFT_7574 FALSE 0.18 127 0
 2300023 2300024 Bcep1808DRAFT_7577 Bcep1808DRAFT_7578 TRUE 0.991 58 212.486
 2300024 2300025 Bcep1808DRAFT_7578 Bcep1808DRAFT_7579 TRUE 0.974 32 65.668
 2300027 2300028 Bcep1808DRAFT_7580 Bcep1808DRAFT_7581 TRUE 0.999 16 327.049
 2300028 2300029 Bcep1808DRAFT_7581 Bcep1808DRAFT_7582 TRUE 0.998 -3 352.633
 2300029 2300030 Bcep1808DRAFT_7582 Bcep1808DRAFT_7583 TRUE 0.994 96 214.83
 2300032 2300033 Bcep1808DRAFT_7584 Bcep1808DRAFT_7585 TRUE 0.979 37 126.182
 2300033 2300034 Bcep1808DRAFT_7585 Bcep1808DRAFT_7586 TRUE 0.983 29 140.703
 2300034 2300035 Bcep1808DRAFT_7586 Bcep1808DRAFT_7587 TRUE 0.842 167 175.697
 2300037 2300038 Bcep1808DRAFT_7589 Bcep1808DRAFT_7590 TRUE 0.971 15 28.097
 2300038 2300039 Bcep1808DRAFT_7590 Bcep1808DRAFT_7591 TRUE 0.931 119 27.648
 2300039 2300040 Bcep1808DRAFT_7591 Bcep1808DRAFT_7592 TRUE 0.548 212 7.959
 2300040 2300041 Bcep1808DRAFT_7592 Bcep1808DRAFT_7593 TRUE 0.964 47 10.533
 2300041 2300042 Bcep1808DRAFT_7593 Bcep1808DRAFT_7594 FALSE 0 360 -55.428
 2300042 2300043 Bcep1808DRAFT_7594 Bcep1808DRAFT_7595 FALSE 0.041 179 -4.471
 2300043 2300044 Bcep1808DRAFT_7595 Bcep1808DRAFT_7596 FALSE 0.356 152 4.206
 2300045 2300046 Bcep1808DRAFT_7624 Bcep1808DRAFT_7664 TRUE 0.978 -3 82.107
 2300046 2300047 Bcep1808DRAFT_7664 Bcep1808DRAFT_7597 TRUE 0.979 39 148.878
 2300050 2300051 Bcep1808DRAFT_7599 Bcep1808DRAFT_7600 FALSE 0 357 0.462
 2300053 2300054 Bcep1808DRAFT_7601 Bcep1808DRAFT_7603 FALSE 0.003 203 -6.637
 2300054 2300055 Bcep1808DRAFT_7603 Bcep1808DRAFT_7604 FALSE 0.136 223 6.384
 2300055 2300056 Bcep1808DRAFT_7604 Bcep1808DRAFT_7605 TRUE 0.944 -3 18.91
 2300056 2300057 Bcep1808DRAFT_7605 Bcep1808DRAFT_7606 </