VIMSS Operon Predictions for Burkholderia sp. 383

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 1056304 1056305 Bcep18194_C6526 Bcep18194_C6527 FALSE 0 300 0.312
 1056305 1056306 Bcep18194_C6527 Bcep18194_C6528 FALSE 0.016 267 0.25
 1056307 1056308 Bcep18194_C6529 Bcep18194_C6530 FALSE 0.462 30 0
 1056308 1056309 Bcep18194_C6530 Bcep18194_C6531 FALSE 0.41 -48 0
 1056310 1056311 Bcep18194_C6532 Bcep18194_C6533 TRUE 0.619 20 0
 1056312 1056313 Bcep18194_C6534 Bcep18194_C6535 TRUE 0.757 7 0
 1056313 1056314 Bcep18194_C6535 Bcep18194_C6536 FALSE 0.065 167 1.425
 1056314 1056315 Bcep18194_C6536 Bcep18194_C6537 TRUE 0.908 0 2.836
 1056316 1056317 Bcep18194_C6538 Bcep18194_C6539 FALSE 0.005 302 0
 1056317 1056318 Bcep18194_C6539 Bcep18194_C6540 FALSE 0.002 500 0
 1056318 1056319 Bcep18194_C6540 Bcep18194_C6541 FALSE 0.006 504 0
 1056319 1056320 Bcep18194_C6541 Bcep18194_C6542 FALSE 0.006 283 0
 1056320 1056321 Bcep18194_C6542 Bcep18194_C6543 FALSE 0.5 -19 1.24
 1056321 1056322 Bcep18194_C6543 Bcep18194_C6544 TRUE 0.964 11 12.564
 1056322 1056323 Bcep18194_C6544 Bcep18194_C6545 FALSE 0.468 -3 -0.87
 1056323 1056324 Bcep18194_C6545 Bcep18194_C6546 FALSE 0.019 92 -7.111
 1056325 1056326 Bcep18194_C6547 Bcep18194_C6548 FALSE 0.007 264 0
 1056326 1056327 Bcep18194_C6548 Bcep18194_C6549 TRUE 0.941 3 4.69
 1056327 1056328 Bcep18194_C6549 Bcep18194_C6550 TRUE 0.964 0 6.306
 1056328 1056329 Bcep18194_C6550 Bcep18194_C6551 TRUE 0.697 15 0
 1056329 1056330 Bcep18194_C6551 Bcep18194_C6552 TRUE 0.966 4 0
 1056331 1056332 Bcep18194_C6553 Bcep18194_C6554 TRUE 0.712 14 0
 1056332 1056333 Bcep18194_C6554 Bcep18194_C6555 TRUE 0.707 -28 38.768
 1056333 1056334 Bcep18194_C6555 Bcep18194_C6556 TRUE 0.894 3 35.846
 1056334 1056335 Bcep18194_C6556 Bcep18194_C6557 TRUE 0.773 0 -3.669
 1056335 1056336 Bcep18194_C6557 Bcep18194_C6558 FALSE 0.004 1160 0
 1056336 1056337 Bcep18194_C6558 Bcep18194_C6559 FALSE 0.019 358 0
 1056339 1056340 Bcep18194_C6561 Bcep18194_C6562 TRUE 0.976 12 51.775
 1056340 1056341 Bcep18194_C6562 Bcep18194_C6563 TRUE 0.964 65 168.524
 1056341 1056342 Bcep18194_C6563 Bcep18194_C6564 TRUE 0.989 22 60.878
 1056342 1056343 Bcep18194_C6564 Bcep18194_C6565 TRUE 0.981 -22 44.466
 1056343 1056344 Bcep18194_C6565 Bcep18194_C6566 TRUE 0.866 23 1.983
 1056344 1056345 Bcep18194_C6566 Bcep18194_C6567 FALSE 0.001 550 0
 1056345 1056346 Bcep18194_C6567 Bcep18194_C6568 FALSE 0.108 126 0
 1056346 1056347 Bcep18194_C6568 Bcep18194_C6569 FALSE 0.455 34 0
 1056347 1056348 Bcep18194_C6569 Bcep18194_C6570 TRUE 0.963 -3 0
 1056350 1056351 Bcep18194_C6572 Bcep18194_C6573 FALSE 0.123 58 -6.078
 1056351 1056352 Bcep18194_C6573 Bcep18194_C6574 FALSE 0.048 164 0
 1056353 1056354 Bcep18194_C6575 Bcep18194_C6576 FALSE 0.324 91 0.354
 1056356 1056357 Bcep18194_C6578 Bcep18194_C6579 FALSE 0.001 495 0
 1056357 1056358 Bcep18194_C6579 Bcep18194_C6580 TRUE 0.789 8 10.257
 1056358 1056359 Bcep18194_C6580 Bcep18194_C6581 TRUE 0.961 -10 51.955
 1056359 1056360 Bcep18194_C6581 Bcep18194_C6582 TRUE 0.995 -3 202.263
 1056360 1056361 Bcep18194_C6582 Bcep18194_C6583 TRUE 0.995 -3 255.595
 1056361 1056362 Bcep18194_C6583 Bcep18194_C6584 TRUE 0.606 93 -7.95
 1056362 1056363 Bcep18194_C6584 Bcep18194_C6585 TRUE 0.969 9 0.755
 1056363 1056364 Bcep18194_C6585 Bcep18194_C6586 TRUE 0.985 -3 43.867
 1056364 1056365 Bcep18194_C6586 Bcep18194_C6587 FALSE 0.303 133 7.676
 1056365 1056366 Bcep18194_C6587 Bcep18194_C6588 TRUE 0.995 -3 159.866
 1056366 1056367 Bcep18194_C6588 Bcep18194_C6589 FALSE 0.002 305 -0.67
 1056368 1056369 Bcep18194_C6590 Bcep18194_C6591 FALSE 0.001 734 -0.279
 1056369 1056370 Bcep18194_C6591 Bcep18194_C6592 FALSE 0.001 570 0
 1056370 1056371 Bcep18194_C6592 Bcep18194_C6593 FALSE 0.001 780 0
 1056372 1056373 Bcep18194_C6594 Bcep18194_C6595 TRUE 0.551 25 0
 1056373 1056374 Bcep18194_C6595 Bcep18194_C6596 FALSE 0.035 179 0
 1056374 1056375 Bcep18194_C6596 Bcep18194_C6597 FALSE 0.236 63 0
 1056376 1056377 Bcep18194_C6598 Bcep18194_C6599 FALSE 0.001 774 0
 1056377 1056378 Bcep18194_C6599 Bcep18194_C6600 TRUE 0.795 -34 8.809
 1056378 1056379 Bcep18194_C6600 Bcep18194_C6601 TRUE 0.759 6 0
 1056379 1056380 Bcep18194_C6601 Bcep18194_C6602 TRUE 0.703 -3 0
 1056384 1056385 Bcep18194_C6606 Bcep18194_C6607 FALSE 0.002 233 0.129
 1056385 1056386 Bcep18194_C6607 Bcep18194_C6608 TRUE 0.977 16 23.829
 1056386 1056387 Bcep18194_C6608 Bcep18194_C6609 TRUE 0.936 3 3.839
 1056388 1056389 Bcep18194_C6610 Bcep18194_C6611 FALSE 0.001 324 0.422
 1056389 1056390 Bcep18194_C6611 Bcep18194_C6612 FALSE 0.001 317 0.346
 1056393 1056394 Bcep18194_C6615 Bcep18194_C6616 FALSE 0 398 -10.444
 1056394 1056395 Bcep18194_C6616 Bcep18194_C6617 TRUE 0.98 -3 25.009
 1056396 1056397 Bcep18194_C6618 Bcep18194_C6619 FALSE 0.287 82 0.129
 1056397 1056398 Bcep18194_C6619 Bcep18194_C6620 FALSE 0.001 325 0.129
 1056398 1056399 Bcep18194_C6620 Bcep18194_C6621 TRUE 0.585 59 5.221
 1056400 1056401 Bcep18194_C6622 Bcep18194_C6623 FALSE 0.099 150 -0.528
 1056401 1056402 Bcep18194_C6623 Bcep18194_C6624 FALSE 0.287 80 0.122
 1056402 1056403 Bcep18194_C6624 Bcep18194_C6625 FALSE 0.009 302 0.122
 1056404 1056405 Bcep18194_C6626 Bcep18194_C6627 FALSE 0.002 405 0
 1056406 1056407 Bcep18194_C6628 Bcep18194_C6629 FALSE 0.007 274 0
 1056407 1056408 Bcep18194_C6629 Bcep18194_C6630 FALSE 0.473 -31 0
 1056408 1056409 Bcep18194_C6630 Bcep18194_C6631 FALSE 0.267 55 0
 1056409 1056410 Bcep18194_C6631 Bcep18194_C6632 FALSE 0.273 65 -0.948
 1056410 1056411 Bcep18194_C6632 Bcep18194_C6633 TRUE 0.991 4 72.767
 1056411 1056412 Bcep18194_C6633 Bcep18194_C6634 FALSE 0.222 122 0.209
 1056412 1056413 Bcep18194_C6634 Bcep18194_C6635 TRUE 0.886 10 0.337
 1056415 1056416 Bcep18194_CR0084 Bcep18194_CR0085 tRNA-Ile1 FALSE 0.231 64 0
 1056416 1056417 Bcep18194_CR0085 Bcep18194_CR0086 tRNA-Ile1 tRNA-Ala1 FALSE 0.131 101 0
 1056417 1056418 Bcep18194_CR0086 Bcep18194_CR0087 tRNA-Ala1 FALSE 0.005 291 0
 1056418 1056419 Bcep18194_CR0087 Bcep18194_CR0088 FALSE 0.086 132 0
 1056420 1056421 Bcep18194_C6637 Bcep18194_C6638 FALSE 0.327 106 0.451
 1056421 1056422 Bcep18194_C6638 Bcep18194_C6639 TRUE 0.875 -3 0.409
 1056422 1056423 Bcep18194_C6639 Bcep18194_C6640 TRUE 0.97 13 7.383
 1056425 1056426 Bcep18194_C6642 Bcep18194_C6643 FALSE 0.031 110 -2.679
 1056426 1056427 Bcep18194_C6643 Bcep18194_C6644 FALSE 0.25 93 0.129
 1056428 1056429 Bcep18194_C6645 Bcep18194_C6646 FALSE 0.266 82 5.36
 1056429 1056430 Bcep18194_C6646 Bcep18194_C6647 FALSE 0.006 301 0
 1056431 1056432 Bcep18194_C6648 Bcep18194_C6649 FALSE 0.204 67 -1.418
 1056433 1056434 Bcep18194_C6650 Bcep18194_C6651 TRUE 0.927 23 31.144
 1056434 1056435 Bcep18194_C6651 Bcep18194_C6652 TRUE 0.915 19 24.112
 1056437 1056438 Bcep18194_C6654 Bcep18194_C6655 TRUE 0.524 136 -5.901
 1056438 1056439 Bcep18194_C6655 Bcep18194_C6656 TRUE 0.954 74 151.281
 1056439 1056440 Bcep18194_C6656 Bcep18194_C6657 TRUE 0.905 101 1.415
 1056440 1056441 Bcep18194_C6657 Bcep18194_C6658 TRUE 0.96 71 36.489
 1056441 1056442 Bcep18194_C6658 Bcep18194_C6659 FALSE 0.057 279 -3.652
 1056442 1056443 Bcep18194_C6659 Bcep18194_C6660 TRUE 0.891 39 -46.24
 1056443 1056444 Bcep18194_C6660 Bcep18194_C6661 TRUE 0.878 104 137.518
 1056445 1056446 Bcep18194_C6662 Bcep18194_C6663 FALSE 0.009 225 -0.516
 1056446 1056447 Bcep18194_C6663 Bcep18194_C6664 TRUE 0.856 76 5.342
 1056447 1056448 Bcep18194_C6664 Bcep18194_C6665 TRUE 0.911 36 3.06
 1056448 1056449 Bcep18194_C6665 Bcep18194_C6666 FALSE 0.001 523 0
 1056449 1056450 Bcep18194_C6666 Bcep18194_C6667 FALSE 0.095 113 0
 1056450 1056451 Bcep18194_C6667 Bcep18194_C6668 TRUE 0.858 17 0.542
 1056451 1056452 Bcep18194_C6668 Bcep18194_C6669 TRUE 0.757 7 0
 1056455 1056456 Bcep18194_C6672 Bcep18194_C6673 FALSE 0.418 34 0
 1056456 1056457 Bcep18194_C6673 Bcep18194_C6674 FALSE 0.018 214 0
 1056457 1056458 Bcep18194_C6674 Bcep18194_C6675 TRUE 0.748 10 0
 1056458 1056459 Bcep18194_C6675 Bcep18194_C6676 TRUE 0.54 -10 0
 1056459 1056460 Bcep18194_C6676 Bcep18194_C6677 TRUE 0.54 -10 0
 1056460 1056461 Bcep18194_C6677 Bcep18194_C6678 TRUE 0.688 -3 -1.46
 1056461 1056462 Bcep18194_C6678 Bcep18194_C6679 FALSE 0.001 514 0
 1056462 1056463 Bcep18194_C6679 Bcep18194_C6680 FALSE 0.002 419 0
 1056463 1056464 Bcep18194_C6680 Bcep18194_C6681 FALSE 0.03 186 0
 1056464 1056465 Bcep18194_C6681 Bcep18194_C6682 FALSE 0.377 38 0
 1056466 1056467 Bcep18194_C6683 Bcep18194_C6684 TRUE 0.665 17 0
 1056467 1056468 Bcep18194_C6684 Bcep18194_C6685 TRUE 0.998 2 53.001
 1056470 1056471 Bcep18194_C6687 Bcep18194_C6688 TRUE 0.949 4 3.987
 1056471 1056472 Bcep18194_C6688 Bcep18194_C6689 TRUE 0.973 16 12.056
 1056472 1056473 Bcep18194_C6689 Bcep18194_C6690 TRUE 0.971 -3 6.73
 1056473 1056474 Bcep18194_C6690 Bcep18194_C6691 TRUE 0.515 -15 0
 1056475 1056476 Bcep18194_C6692 Bcep18194_C6693 TRUE 0.703 -3 0
 1056476 1056477 Bcep18194_C6693 Bcep18194_C6694 TRUE 0.703 -3 0
 1056477 1056478 Bcep18194_C6694 Bcep18194_C6695 TRUE 0.608 26 0
 1056478 1056479 Bcep18194_C6695 Bcep18194_C6696 FALSE 0.182 96 0
 1056479 1056480 Bcep18194_C6696 Bcep18194_C6697 TRUE 0.942 -3 0
 1056480 1056481 Bcep18194_C6697 Bcep18194_C6698 TRUE 0.953 -3 1.439
 1056481 1056482 Bcep18194_C6698 Bcep18194_C6699 TRUE 0.844 26 1.439
 1056482 1056483 Bcep18194_C6699 Bcep18194_C6700 TRUE 0.603 -7 0
 1056483 1056484 Bcep18194_C6700 Bcep18194_C6701 FALSE 0.344 45 0
 1056484 1056485 Bcep18194_C6701 Bcep18194_C6702 TRUE 0.728 15 0
 1056485 1056486 Bcep18194_C6702 Bcep18194_C6703 FALSE 0.001 927 0
 1056487 1056488 Bcep18194_C6704 Bcep18194_C6705 FALSE 0.001 469 0
 1056489 1056490 Bcep18194_C6706 Bcep18194_C6707 TRUE 0.93 0 2.854
 1056490 1056491 Bcep18194_C6707 Bcep18194_C6708 TRUE 0.509 73 2.854
 1056491 1056492 Bcep18194_C6708 Bcep18194_C6709 TRUE 0.937 24 2.759
 1056493 1056494 Bcep18194_C6710 Bcep18194_C6711 FALSE 0.002 367 0
 1056494 1056495 Bcep18194_C6711 Bcep18194_C6712 FALSE 0.245 50 0
 1056495 1056496 Bcep18194_C6712 Bcep18194_C6713 TRUE 0.794 41 -0.14
 1056496 1056497 Bcep18194_C6713 Bcep18194_C6714 TRUE 0.998 -3 59.703
 1056497 1056498 Bcep18194_C6714 Bcep18194_C6715 TRUE 0.973 44 57.691
 1056498 1056499 Bcep18194_C6715 Bcep18194_C6716 TRUE 0.793 52 -0.159
 1056499 1056500 Bcep18194_C6716 Bcep18194_C6717 TRUE 0.93 41 4.509
 1056500 1056501 Bcep18194_C6717 Bcep18194_C6718 TRUE 0.982 -3 6.507
 1056501 1056502 Bcep18194_C6718 Bcep18194_C6719 TRUE 0.987 5 3.858
 1056502 1056503 Bcep18194_C6719 Bcep18194_C6720 FALSE 0.071 150 1.386
 1056503 1056504 Bcep18194_C6720 Bcep18194_C6721 TRUE 0.78 -3 1.677
 1056504 1056505 Bcep18194_C6721 Bcep18194_C6722 FALSE 0.135 99 0
 1056506 1056507 Bcep18194_C6723 Bcep18194_C6724 FALSE 0.119 77 -0.812
 1056507 1056508 Bcep18194_C6724 Bcep18194_C6725 TRUE 0.601 1 -0.548
 1056508 1056509 Bcep18194_C6725 Bcep18194_C6726 FALSE 0.002 383 -0.497
 1056512 1056513 Bcep18194_C6729 Bcep18194_C6730 FALSE 0.466 37 1.243
 1056514 1056515 Bcep18194_C6731 Bcep18194_C6732 FALSE 0.154 89 0
 1056515 1056516 Bcep18194_C6732 Bcep18194_C6733 FALSE 0.025 195 0
 1056518 1056519 Bcep18194_C6735 Bcep18194_C6736 TRUE 0.784 13 0
 1056521 1056522 Bcep18194_C6738 Bcep18194_C6739 TRUE 0.66 107 -0.658
 1056522 1056523 Bcep18194_C6739 Bcep18194_C6740 TRUE 0.966 -3 -0.217
 1056523 1056524 Bcep18194_C6740 Bcep18194_C6741 TRUE 0.959 10 0.842
 1056524 1056525 Bcep18194_C6741 Bcep18194_C6742 TRUE 0.808 3 -0.374
 1056525 1056526 Bcep18194_C6742 Bcep18194_C6743 TRUE 0.823 -3 0
 1056526 1056527 Bcep18194_C6743 Bcep18194_C6744 TRUE 0.926 -514 0
 1056527 1056528 Bcep18194_C6744 Bcep18194_C6745 FALSE 0.1 123 0
 1056528 1056529 Bcep18194_C6745 Bcep18194_C6746 TRUE 0.872 25 3.262
 1056529 1056530 Bcep18194_C6746 Bcep18194_C6747 FALSE 0.484 -25 0
 1056530 1056531 Bcep18194_C6747 Bcep18194_C6748 FALSE 0.203 71 0
 1056531 1056532 Bcep18194_C6748 Bcep18194_C6749 TRUE 0.626 25 0
 1056532 1056533 Bcep18194_C6749 Bcep18194_C6750 FALSE 0.055 159 0
 1056533 1056534 Bcep18194_C6750 Bcep18194_C6751 FALSE 0.29 49 0
 1056534 1056535 Bcep18194_C6751 Bcep18194_C6752 FALSE 0.458 -208 0
 1056538 1056539 Bcep18194_C6755 Bcep18194_C6756 TRUE 0.703 -3 0
 1056539 1056540 Bcep18194_C6756 Bcep18194_C6757 FALSE 0.124 174 0
 1056540 1056541 Bcep18194_C6757 Bcep18194_C6758 FALSE 0.009 256 0
 1056542 1056543 Bcep18194_C6759 Bcep18194_C6760 TRUE 0.515 -15 0
 1056543 1056544 Bcep18194_C6760 Bcep18194_C6761 FALSE 0.462 30 0
 1056544 1056545 Bcep18194_C6761 Bcep18194_C6762 FALSE 0.003 362 0
 1056545 1056546 Bcep18194_C6762 Bcep18194_C6763 FALSE 0.05 162 0
 1056546 1056547 Bcep18194_C6763 Bcep18194_C6764 TRUE 0.716 54 10.629
 1056547 1056548 Bcep18194_C6764 Bcep18194_C6765 FALSE 0.056 231 -0.129
 1056548 1056549