VIMSS Operon Predictions for Burkholderia thailandensis E264

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 1073881 1073882 BTH_II0002 BTH_II0003 FALSE 0.436 166 3.449
 1073882 1073883 BTH_II0003 BTH_II0004 TRUE 0.819 80 3.449
 1073884 1073885 BTH_II0005 BTH_II0006 kbl tdh TRUE 0.99 13 305.052
 1073886 1073887 BTH_II0007 BTH_II0008 FALSE 0.003 542 0
 1073887 1073888 BTH_II0008 BTH_II0009 FALSE 0.103 174 0
 1073889 1073890 BTH_II0010 BTH_II0011 TRUE 0.923 101 36.535
 1073891 1073892 BTH_II0012 BTH_II0013 FALSE 0.265 105 -7.249
 1073893 1073894 BTH_II0014 BTH_II0015 FALSE 0 366 0.366
 1073894 1073895 BTH_II0015 BTH_II0016 FALSE 0.442 144 -0.71
 1073896 1073897 BTH_II0017 BTH_II0018 FALSE 0.154 122 -0.155
 1073897 1073898 BTH_II0018 BTH_II0019 TRUE 0.807 63 39.388
 1073898 1073899 BTH_II0019 BTH_II0020 TRUE 0.862 50 0.044
 1073901 1073902 BTH_II0022 BTH_II0023 FALSE 0.013 312 0
 1073902 1073903 BTH_II0023 BTH_II0024 TRUE 0.897 40 9.426
 1073904 1073905 BTH_II0025 BTH_II0026 TRUE 0.812 -3 0
 1073905 1073906 BTH_II0026 BTH_II0027 FALSE 0.264 152 0.107
 1073906 1073907 BTH_II0027 BTH_II0028 FALSE 0.187 170 0.107
 1073907 1073908 BTH_II0028 BTH_II0029 TRUE 0.919 -3 0.615
 1073908 1073909 BTH_II0029 BTH_II0030 TRUE 0.919 -3 0.615
 1073909 1073910 BTH_II0030 BTH_II0031 TRUE 0.869 17 0.615
 1073911 1073912 BTH_II0032 BTH_II0033 TRUE 0.537 37 0
 1073914 1073915 BTH_II0035 BTH_II0036 TRUE 0.774 150 6.67
 1073916 1073917 BTH_II0037 BTH_II0038 FALSE 0.46 77 0
 1073919 1073920 BTH_II0040 BTH_II0041 TRUE 0.867 -30 2.786
 1073921 1073922 BTH_II0042 BTH_II0043 TRUE 0.923 13 3.134
 1073922 1073923 BTH_II0043 BTH_II0044 TRUE 0.608 97 0.44
 1073924 1073925 BTH_II0045 BTH_II0046 FALSE 0.034 209 -5.761
 1073925 1073926 BTH_II0046 BTH_II0047 TRUE 0.999 19 89.36
 1073926 1073927 BTH_II0047 BTH_II0048 FALSE 0.451 100 -5.664
 1073927 1073928 BTH_II0048 BTH_II0049 TRUE 0.971 13 47.369
 1073928 1073929 BTH_II0049 BTH_II0050 pcaC TRUE 0.991 16 73.062
 1073929 1073930 BTH_II0050 BTH_II0051 pcaC FALSE 0.39 168 -1.368
 1073931 1073932 BTH_II0052 BTH_II0053 TRUE 0.525 101 0.203
 1073932 1073933 BTH_II0053 BTH_II0054 FALSE 0.001 755 0
 1073933 1073934 BTH_II0054 BTH_II0055 TRUE 0.864 62 9.381
 1073934 1073935 BTH_II0055 BTH_II0056 TRUE 0.673 92 1.743
 1073935 1073936 BTH_II0056 BTH_II0057 TRUE 0.803 29 -0.825
 1073936 1073937 BTH_II0057 BTH_II0058 TRUE 0.985 11 65.113
 1073937 1073938 BTH_II0058 BTH_II0059 TRUE 0.965 22 57.377
 1073938 1073939 BTH_II0059 BTH_II0060 FALSE 0.041 214 0
 1073939 1073940 BTH_II0060 BTH_II0061 TRUE 0.563 -40 0
 1073941 1073942 BTH_II0062 BTH_II0063 TRUE 0.988 -6 118.964
 1073942 1073943 BTH_II0063 BTH_II0064 TRUE 0.887 -3 3.611
 1073945 1073946 BTH_II0066 BTH_II0067 TRUE 0.609 25 0
 1073946 1073947 BTH_II0067 BTH_II0068 TRUE 0.602 25 0
 1073947 1073948 BTH_II0068 BTH_II0069 FALSE 0.381 96 0
 1073948 1073949 BTH_II0069 BTH_II0070 FALSE 0.002 729 0
 1073949 1073950 BTH_II0070 BTH_II0071 FALSE 0.151 156 0
 1073950 1073951 BTH_II0071 BTH_II0072 FALSE 0.481 69 0
 1073952 1073953 BTH_II0073 BTH_II0074 chrA TRUE 0.984 -3 22.01
 1073956 1073957 BTH_II0077 BTH_II0078 FALSE 0 496 -74.583
 1073957 1073958 BTH_II0078 BTH_II0079 FALSE 0.328 108 0
 1073959 1073960 BTH_II0080 BTH_II0081 FALSE 0.2 143 0
 1073960 1073961 BTH_II0081 BTH_II0082 FALSE 0.002 675 0
 1073961 1073962 BTH_II0082 BTH_II0083 TRUE 0.68 19 0
 1073963 1073964 BTH_II0084 BTH_II0085 potC TRUE 0.953 -13 12.528
 1073964 1073965 BTH_II0085 BTH_II0086 potC TRUE 0.988 -3 24.641
 1073967 1073968 BTH_II0088 BTH_II0089 FALSE 0.012 322 0
 1073968 1073969 BTH_II0089 BTH_II0090 FALSE 0.483 68 0
 1073969 1073970 BTH_II0090 BTH_II0091 FALSE 0.312 139 0.024
 1073970 1073971 BTH_II0091 BTH_II0092 TRUE 0.795 10 0
 1073973 1073974 BTH_II0094 BTH_II0095 FALSE 0.086 184 0
 1073974 1073975 BTH_II0095 BTH_II0096 TRUE 0.899 -42 0
 1073975 1073976 BTH_II0096 BTH_II0097 FALSE 0.43 86 0
 1073976 1073977 BTH_II0097 BTH_II0098 TRUE 0.795 10 0
 1073978 1073979 BTH_II0099 BTH_II0100 trx TRUE 0.866 20 -0.173
 1073981 1073982 BTH_II0102 BTH_II0103 FALSE 0.002 478 -0.431
 1073982 1073983 BTH_II0103 BTH_II0104 FALSE 0.002 539 0
 1073983 1073984 BTH_II0104 BTH_II0105 FALSE 0.003 541 0
 1073984 1073985 BTH_II0105 BTH_II0106 FALSE 0.002 628 0
 1073985 1073986 BTH_II0106 BTH_II0107 FALSE 0.351 103 0
 1073986 1073987 BTH_II0107 BTH_II0108 TRUE 0.888 12 0.203
 1073987 1073988 BTH_II0108 BTH_II0109 TRUE 0.976 -6 36.889
 1073988 1073989 BTH_II0109 BTH_II0110 FALSE 0.452 223 44.797
 1073989 1073990 BTH_II0110 BTH_II0111 FALSE 0.001 827 0
 1073992 1073993 BTH_II0113 BTH_II0114 FALSE 0.047 215 -0.571
 1073994 1073995 BTH_II0115 BTH_II0116 TRUE 0.866 82 18.946
 1073995 1073996 BTH_II0116 BTH_II0117 TRUE 0.931 37 87.585
 1073996 1073997 BTH_II0117 BTH_II0118 TRUE 0.963 20 12.722
 1073997 1073998 BTH_II0118 BTH_II0119 TRUE 0.745 31 0.407
 1073998 1073999 BTH_II0119 BTH_II0120 TRUE 0.934 3 0.964
 1073999 1074000 BTH_II0120 BTH_II0121 FALSE 0 344 -1.567
 1074000 1074001 BTH_II0121 BTH_II0122 TRUE 0.914 34 40.722
 1074001 1074002 BTH_II0122 BTH_II0123 FALSE 0.099 201 28.295
 1074002 1074003 BTH_II0123 BTH_II0124 FALSE 0.309 128 21.217
 1074003 1074004 BTH_II0124 BTH_II0125 TRUE 0.53 -87 28.85
 1074004 1074005 BTH_II0125 BTH_II0126 TRUE 0.793 -3 12.291
 1074005 1074006 BTH_II0126 BTH_II0127 TRUE 0.891 15 6.633
 1074006 1074007 BTH_II0127 BTH_II0128 FALSE 0.059 170 0.309
 1074007 1074008 BTH_II0128 BTH_II0129 TRUE 0.552 101 0.309
 1074008 1074009 BTH_II0129 BTH_II0130 TRUE 0.699 75 11.644
 1074009 1074010 BTH_II0130 BTH_II0131 TRUE 0.852 13 -0.205
 1074011 1074012 BTH_II0132 BTH_II0133 TRUE 0.884 9 0.188
 1074012 1074013 BTH_II0133 BTH_II0134 TRUE 0.717 -49 0.407
 1074013 1074014 BTH_II0134 BTH_II0135 TRUE 0.925 19 25.912
 1074014 1074015 BTH_II0135 BTH_II0136 TRUE 0.957 -3 28.67
 1074015 1074016 BTH_II0136 BTH_II0137 TRUE 0.962 2 12.715
 1074016 1074017 BTH_II0137 BTH_II0138 TRUE 0.913 -13 31.198
 1074017 1074018 BTH_II0138 BTH_II0139 TRUE 0.752 -16 0.053
 1074020 1074021 BTH_II0141 BTH_II0142 FALSE 0.006 1795 -18.649
 1074024 1074025 BTH_II0145 BTH_II0146 TRUE 0.875 -3 0.012
 1074025 1074026 BTH_II0146 BTH_II0147 TRUE 0.79 -7 0.012
 1074026 1074027 BTH_II0147 BTH_II0148 TRUE 0.903 -3 7.242
 1074027 1074028 BTH_II0148 BTH_II0149 TRUE 0.847 -24 10.907
 1074028 1074029 BTH_II0149 BTH_II0150 TRUE 0.742 -19 0.093
 1074029 1074030 BTH_II0150 BTH_II0151 FALSE 0.447 113 0.093
 1074032 1074033 BTH_II0153 BTH_II0154 TRUE 0.977 19 43.998
 1074033 1074034 BTH_II0154 BTH_II0155 TRUE 0.772 17 -0.83
 1074034 1074035 BTH_II0155 BTH_II0156 TRUE 0.979 45 42.652
 1074035 1074036 BTH_II0156 BTH_II0157 TRUE 0.977 10 -0.129
 1074036 1074037 BTH_II0157 BTH_II0158 TRUE 0.929 81 0.093
 1074037 1074038 BTH_II0158 BTH_II0159 TRUE 0.862 111 4.471
 1074038 1074039 BTH_II0159 BTH_II0160 TRUE 0.974 5 -0.543
 1074039 1074040 BTH_II0160 BTH_II0161 TRUE 0.875 -55 0.093
 1074040 1074041 BTH_II0161 BTH_II0162 TRUE 0.973 25 0.093
 1074042 1074043 BTH_II0163 BTH_II0164 TRUE 0.991 -3 40.702
 1074043 1074044 BTH_II0164 BTH_II0165 TRUE 0.968 -7 47.798
 1074044 1074045 BTH_II0165 BTH_II0166 TRUE 0.98 5 26.432
 1074045 1074046 BTH_II0166 BTH_II0167 TRUE 0.991 0 28.315
 1074046 1074047 BTH_II0167 BTH_II0168 TRUE 0.98 -3 19.28
 1074047 1074048 BTH_II0168 BTH_II0169 TRUE 0.933 4 2.978
 1074049 1074050 BTH_II0170 BTH_II0171 fliE-2 fliF-2 TRUE 0.97 36 34.666
 1074050 1074051 BTH_II0171 BTH_II0172 fliF-2 TRUE 0.98 -19 41.979
 1074051 1074052 BTH_II0172 BTH_II0173 fliH-2 TRUE 0.993 -3 43.78
 1074052 1074053 BTH_II0173 BTH_II0174 fliH-2 TRUE 0.981 -3 39.064
 1074053 1074054 BTH_II0174 BTH_II0175 TRUE 0.927 -3 2.978
 1074054 1074055 BTH_II0175 BTH_II0176 TRUE 0.642 77 1.63
 1074055 1074056 BTH_II0176 BTH_II0177 fliS-2 TRUE 0.986 34 37.563
 1074056 1074057 BTH_II0177 BTH_II0178 fliS-2 TRUE 0.769 -13 0.093
 1074057 1074058 BTH_II0178 BTH_II0179 TRUE 0.875 -3 0.012
 1074058 1074059 BTH_II0179 BTH_II0180 FALSE 0.381 96 0
 1074059 1074060 BTH_II0180 BTH_II0181 TRUE 0.507 49 0
 1074060 1074061 BTH_II0181 BTH_II0182 FALSE 0.002 409 0.012
 1074063 1074064 BTH_II0184 BTH_II0185 flgB-2 flgC-2 TRUE 0.981 37 100.76
 1074064 1074065 BTH_II0185 BTH_II0186 flgC-2 TRUE 0.946 27 43.747
 1074065 1074066 BTH_II0186 BTH_II0187 flgE TRUE 0.981 -3 42.161
 1074066 1074067 BTH_II0187 BTH_II0188 flgE TRUE 0.993 4 39.888
 1074067 1074068 BTH_II0188 BTH_II0189 TRUE 0.976 32 40.262
 1074068 1074069 BTH_II0189 BTH_II0190 flgH-2 TRUE 0.993 0 38.732
 1074069 1074070 BTH_II0190 BTH_II0191 flgH-2 flgI-2 TRUE 0.995 0 74.864
 1074070 1074071 BTH_II0191 BTH_II0192 flgI-2 TRUE 0.859 14 0.251
 1074071 1074072 BTH_II0192 BTH_II0193 TRUE 0.576 135 6.571
 1074072 1074073 BTH_II0193 BTH_II0194 TRUE 0.962 18 45.906
 1074073 1074074 BTH_II0194 BTH_II0195 TRUE 0.91 16 19.258
 1074074 1074075 BTH_II0195 BTH_II0196 FALSE 0.306 115 0
 1074079 1074080 BTH_II0200 BTH_II0201 TRUE 0.822 75 5.848
 1074080 1074081 BTH_II0201 BTH_II0202 pyk-2 TRUE 0.851 59 -6.381
 1074081 1074082 BTH_II0202 BTH_II0203 pyk-2 FALSE 0.497 92 -2.659
 1074082 1074083 BTH_II0203 BTH_II0204 FALSE 0 938 -29.054
 1074083 1074084 BTH_II0204 BTH_II0205 TRUE 0.662 40 0.258
 1074084 1074085 BTH_II0205 BTH_II0206 TRUE 0.745 24 -0.048
 1074085 1074086 BTH_II0206 BTH_II0207 FALSE 0.055 154 -0.42
 1074087 1074088 BTH_II0208 BTH_II0209 FALSE 0 992 -44.702
 1074088 1074089 BTH_II0209 BTH_II0210 TRUE 0.936 80 68.88
 1074089 1074090 BTH_II0210 BTH_II0211 TRUE 0.924 55 63.098
 1074090 1074091 BTH_II0211 BTH_II0212 TRUE 0.853 -13 -5.373
 1074091 1074092 BTH_II0212 BTH_II0213 FALSE 0.003 843 -0.654
 1074092 1074093 BTH_II0213 BTH_II0214 FALSE 0 324 -0.583
 1074093 1074094 BTH_II0214 BTH_II0215 FALSE 0.08 -82 -4.676
 1074094 1074095 BTH_II0215 BTH_II0216 FALSE 0.008 266 -8.885
 1074095 1074096 BTH_II0216 BTH_II0217 TRUE 0.531 41 14.202
 1074099 1074100 BTH_II0220 BTH_II0221 FALSE 0.453 77 0
 1074101 1074102 BTH_II0222 BTH_II0223 TRUE 0.667 146 0.895
 1074102 1074103 BTH_II0223 BTH_II0224 TRUE 0.759 33 12.995
 1074103 1074104 BTH_II0224 BTH_II0225 FALSE 0.026 96 -8.215
 1074105 1074106 BTH_II0226 BTH_II0227 FALSE 0.015 160 0.561
 1074106 1074107 BTH_II0227 BTH_II0228 FALSE 0.001 298 -4.34
 1074107 1074108 BTH_II0228 BTH_II0229 FALSE 0 619 -9.716
 1074108 1074109 BTH_II0229 BTH_II0230 pvcB TRUE 0.989 -3 26.663
 1074109 1074110 BTH_II0230 BTH_II0231 pvcB TRUE 0.937 26 8.926
 1074110 1074111 BTH_II0231 BTH_II0232 asnB-1 TRUE 0.75 25 -4.659
 1074111 1074112 BTH_II0232 BTH_II0233 asnB-1 TRUE 0.737 29 -0.233
 1074112 1074113 BTH_II0233 BTH_II0234 TRUE 0.745 -52 0.615
 1074115 1074116 BTH_II0236 BTH_II0237 FALSE 0.001 800 0
 1074116 1074117 BTH_II0237 BTH_II0238 TRUE 0.998 -7 342.899
 1074117 1074118 BTH_II0238 BTH_II0239 TRUE 0.994 5 86.006
 1074119 1074120 BTH_II0240 BTH_II0241 FALSE 0.165 151 0
 1074120 1074121 BTH_II0241 BTH_II0242 FALSE 0.059 194 0
 1074126 1074127 BTH_II0247 BTH_II0248 FALSE 0.001 252 -80.01
 1074128 1074129 BTH_II0249 BTH_II0250 TRUE 0.537 118 0.837
 1074130 1074131 BTH_II0251 BTH_II0252 TRUE 0.969 -3 14.17
 1074131 1074132 BTH_II0252 BTH_II0253 TRUE 0.975 16 54.377
 1074132 1074133 BTH_II0253 BTH_II0254 TRUE 0.986 3 81.333
 1074133 1074134 BTH_II0254 BTH_II0255 TRUE 0.966 6 8.836
 1074134 1074135 BTH_II0255 BTH_II0256 </