VIMSS Operon Predictions for Bacillus halodurans C-125

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 62582 62583 BH0001 BH0002 dnaA dnaN TRUE 0.983 170 882.606
 62583 62584 BH0002 BH0003 dnaN BH0003 TRUE 0.892 184 64.017
 62584 62585 BH0003 BH0004 BH0003 recF TRUE 0.982 12 72.615
 62585 62586 BH0004 BH0005 recF BH0005 TRUE 0.956 11 44.344
 62586 62587 BH0005 BH0006 BH0005 gyrB TRUE 0.923 73 39.03
 62587 62588 BH0006 BH0007 gyrB gyrA TRUE 0.999 22 219.305
 62588 62589 BH0007 BH0008 gyrA BH0008 FALSE 0.285 197 0.224
 62591 62592 BH0010 BH0011 BH0010 BH0011 TRUE 0.911 -7 0.547
 62592 62593 BH0011 BH0012 BH0011 BH0012 FALSE 0.15 236 0.547
 62593 62594 BH0012 BH0013 BH0012 BH0013 FALSE 0.493 1 0.547
 62594 62595 BH0013 BH0014 BH0013 BH0014 FALSE 0.156 135 0
 62595 62596 BH0014 BH0015 BH0014 BH0015 FALSE 0.479 13 0
 62596 62597 BH0015 BH0016 BH0015 BH0016 FALSE 0.304 5 0
 62597 62598 BH0016 BH0017 BH0016 BH0017 TRUE 0.646 -3 0
 62598 62599 BH0017 BH0018 BH0017 BH0018 FALSE 0.362 58 0
 62599 1787090 BH0018 BHr001 BH0018 rrnA-16S FALSE 0.024 658 0
 1787090 1787091 BHr001 BHr002 rrnA-16S rrnA-23S FALSE 0.023 684 0
 1787091 1787092 BHr002 BHr003 rrnA-23S rrnA-5S FALSE 0.038 409 0
 62601 62602 BH0020 BH0021 guaB dacA TRUE 0.515 108 8.103
 62602 62603 BH0021 BH0022 dacA BH0022 FALSE 0.423 140 10.84
 62603 62604 BH0022 BH0023 BH0022 BH0023 TRUE 0.991 8 277.647
 62604 62605 BH0023 BH0024 BH0023 serS TRUE 0.521 270 -12.299
 62606 62607 BH0025 BH0026 BH0025 BH0026 FALSE 0.248 94 -6.15
 62607 62608 BH0026 BH0027 BH0026 BH0027 FALSE 0.152 165 -6.143
 62608 62609 BH0027 BH0028 BH0027 BH0028 TRUE 1 -19 74.181
 62609 62610 BH0028 BH0029 BH0028 BH0029 TRUE 0.96 59 13.085
 62610 62611 BH0029 BH0030 BH0029 BH0030 TRUE 0.998 19 249.199
 62612 1787093 BH0031 BHt001 BH0031 FALSE 0.194 108 0
 1787093 62613 BHt001 BH0032 BH0032 FALSE 0.122 182 0
 62613 62614 BH0032 BH0033 BH0032 BH0033 TRUE 0.627 27 0
 62614 62615 BH0033 BH0034 BH0033 dnaX FALSE 0.338 517 15.335
 62615 62616 BH0034 BH0035 dnaX BH0035 TRUE 0.997 18 269.55
 62616 62617 BH0035 BH0036 BH0035 recR TRUE 0.995 13 938.417
 62617 62618 BH0036 BH0037 recR BH0037 TRUE 0.97 15 37.713
 62618 62619 BH0037 BH0038 BH0037 bofA TRUE 0.602 77 13.931
 62619 1787094 BH0038 BHr004 bofA rrnB-16S FALSE 0.032 466 0
 1787094 1787095 BHr004 BHr005 rrnB-16S rrnB-23S FALSE 0.021 852 0
 1787095 1787096 BHr005 BHr006 rrnB-23S rrnB-5S FALSE 0.06 306 0
 1787096 62620 BHr006 BH0039 rrnB-5S BH0039 FALSE 0.025 588 0
 62620 62621 BH0039 BH0040 BH0039 csfB FALSE 0.026 587 0
 62621 62622 BH0040 BH0041 csfB BH0041 FALSE 0.042 305 -0.184
 62622 62623 BH0041 BH0042 BH0041 tmk TRUE 0.945 -3 39.626
 62623 62624 BH0042 BH0043 tmk BH0043 TRUE 0.993 19 77.513
 62624 62625 BH0043 BH0044 BH0043 holB TRUE 0.98 17 43.144
 62625 62626 BH0044 BH0045 holB BH0045 TRUE 0.977 5 112.65
 62626 62627 BH0045 BH0046 BH0045 BH0046 TRUE 0.99 16 74.949
 62627 62628 BH0046 BH0047 BH0046 BH0047 TRUE 0.933 65 38.544
 62628 62629 BH0047 BH0048 BH0047 BH0048 TRUE 0.987 -3 130.6
 62629 62630 BH0048 BH0049 BH0048 BH0049 TRUE 0.999 -31 29.06
 62632 62633 BH0051 BH0052 BH0051 BH0052 TRUE 0.945 25 2.492
 62633 62634 BH0052 BH0053 BH0052 metS FALSE 0.024 419 0.259
 62634 62635 BH0053 BH0054 metS BH0054 TRUE 0.958 165 181.284
 62635 62636 BH0054 BH0055 BH0054 BH0055 TRUE 0.687 272 36.427
 62636 62637 BH0055 BH0056 BH0055 BH0056 TRUE 0.787 162 25.881
 62637 62638 BH0056 BH0057 BH0056 ksgA TRUE 0.994 -3 148.383
 62638 62639 BH0057 BH0058 ksgA BH0058 TRUE 0.96 55 16.247
 62639 62640 BH0058 BH0059 BH0058 BH0059 FALSE 0.482 407 31.325
 62640 62641 BH0059 BH0060 BH0059 sspF FALSE 0.435 125 12.323
 62641 62642 BH0060 BH0061 sspF BH0061 FALSE 0.345 207 11.632
 62642 62643 BH0061 BH0062 BH0061 purR TRUE 0.959 60 43.574
 62643 62644 BH0062 BH0063 purR BH0063 TRUE 0.928 -3 24.765
 62644 62645 BH0063 BH0064 BH0063 spoVG FALSE 0.32 294 26.704
 62645 62646 BH0064 BH0065 spoVG gcaD TRUE 0.651 268 68.554
 62646 62647 BH0065 BH0066 gcaD prs TRUE 0.995 25 152.744
 62647 62648 BH0066 BH0067 prs ctc TRUE 0.979 101 440.002
 62648 62649 BH0067 BH0068 ctc spoVC TRUE 0.983 166 662.253
 62649 62650 BH0068 BH0069 spoVC mfd TRUE 0.615 553 155.342
 62650 62651 BH0069 BH0070 mfd spoVT TRUE 0.909 161 19.214
 62651 62652 BH0070 BH0071 spoVT BH0071 FALSE 0.454 138 15.873
 62652 62653 BH0071 BH0072 BH0071 BH0072 TRUE 0.931 21 20.84
 62653 62654 BH0072 BH0073 BH0072 BH0073 TRUE 0.951 3 48.047
 62654 62655 BH0073 BH0074 BH0073 BH0074 TRUE 0.857 178 37.895
 62655 62656 BH0074 BH0075 BH0074 BH0075 TRUE 0.978 -3 21.318
 62656 62657 BH0075 BH0076 BH0075 divIC TRUE 0.678 6 16.243
 62657 62658 BH0076 BH0077 divIC BH0077 TRUE 0.931 75 47.044
 62658 1787097 BH0077 BHt002 BH0077 FALSE 0.154 137 0
 1787097 62659 BHt002 BH0078 spoIIE FALSE 0.036 420 0
 62659 62660 BH0078 BH0079 spoIIE BH0079 FALSE 0.305 159 5.008
 62660 62661 BH0079 BH0080 BH0079 BH0080 TRUE 0.997 -37 6.65
 62661 62662 BH0080 BH0081 BH0080 BH0081 FALSE 0.428 34 -1.48
 62662 62663 BH0081 BH0082 BH0081 BH0082 TRUE 0.995 16 285.996
 62663 62664 BH0082 BH0083 BH0082 BH0083 TRUE 0.989 -19 -6.05
 62664 62665 BH0083 BH0084 BH0083 hprT TRUE 0.988 39 147.112
 62665 62666 BH0084 BH0085 hprT ftsH TRUE 0.974 69 185.286
 62666 62667 BH0085 BH0086 ftsH BH0086 TRUE 0.858 220 5.912
 62667 62668 BH0086 BH0087 BH0086 BH0087 TRUE 0.916 16 15.036
 62668 62669 BH0087 BH0088 BH0087 cysK TRUE 0.51 173 5.255
 62669 62670 BH0088 BH0089 cysK BH0089 FALSE 0.159 206 0
 62670 62671 BH0089 BH0090 BH0089 pabB FALSE 0.165 199 0
 62671 62672 BH0090 BH0091 pabB pabA TRUE 0.998 19 183.77
 62672 62673 BH0091 BH0092 pabA pabC TRUE 0.999 -16 15.577
 62673 62674 BH0092 BH0093 pabC sul TRUE 0.999 -22 12.149
 62674 62675 BH0093 BH0094 sul folA TRUE 0.99 8 236.639
 62675 62676 BH0094 BH0095 folA folK TRUE 0.991 1 270.219
 62676 62677 BH0095 BH0096 folK BH0096 TRUE 0.994 -48 12.468
 62677 62678 BH0096 BH0097 BH0096 BH0097 TRUE 0.826 14 11.109
 62678 62679 BH0097 BH0098 BH0097 lysS TRUE 0.967 114 12.068
 62679 1787098 BH0098 BHr007 lysS rrnC-16S FALSE 0.045 369 0
 1787098 1787099 BHr007 BHt003 rrnC-16S FALSE 0.033 453 0
 1787099 1787100 BHt003 BHt004 FALSE 0.418 12 0
 1787100 1787101 BHt004 BHr008 rrnC-23S FALSE 0.042 383 0
 1787101 1787102 BHr008 BHr009 rrnC-23S rrnC-5S FALSE 0.038 411 0
 1787102 1787103 BHr009 BHt005 rrnC-5S FALSE 0.36 10 0
 1787103 1787104 BHt005 BHt006 FALSE 0.453 42 0
 1787104 1787105 BHt006 BHt007 FALSE 0.331 8 0
 1787105 1787106 BHt007 BHt008 FALSE 0.345 9 0
 1787106 1787107 BHt008 BHt009 FALSE 0.318 7 0
 1787107 1787108 BHt009 BHt010 TRUE 0.677 24 0
 1787108 1787109 BHt010 BHt011 TRUE 0.606 16 0
 1787109 1787110 BHt011 BHt012 FALSE 0.308 6 0
 1787110 1787111 BHt012 BHt013 FALSE 0.302 4 0
 1787111 1787112 BHt013 BHr010 rrnD-16S FALSE 0.121 183 0
 1787112 1787113 BHr010 BHr011 rrnD-16S rrnD-23S FALSE 0.022 808 0
 1787113 1787114 BHr011 BHr012 rrnD-23S rrnD-5S FALSE 0.06 306 0
 1787114 62680 BHr012 BH0099 rrnD-5S BH0099 FALSE 0.025 588 0
 62680 62681 BH0099 BH0100 BH0099 ctsR FALSE 0.026 836 0
 62681 62682 BH0100 BH0101 ctsR BH0101 TRUE 0.992 26 80.355
 62682 62683 BH0101 BH0102 BH0101 BH0102 TRUE 0.977 3 106.326
 62683 62684 BH0102 BH0103 BH0102 clpC TRUE 0.994 19 78.464
 62684 62685 BH0103 BH0104 clpC BH0104 TRUE 0.939 168 49.983
 62685 62686 BH0104 BH0105 BH0104 BH0105 TRUE 0.967 9 115.392
 62686 62687 BH0105 BH0106 BH0105 BH0106 TRUE 0.861 159 28.384
 62687 62688 BH0106 BH0107 BH0106 ispD TRUE 0.848 240 50.034
 62688 62689 BH0107 BH0108 ispD ispF TRUE 0.997 1 660.705
 62689 62690 BH0108 BH0109 ispF gltX TRUE 0.938 83 -9.269
 62690 62691 BH0109 BH0110 gltX cysE FALSE 0.448 316 39.795
 62691 62692 BH0110 BH0111 cysE cysS TRUE 0.99 38 103.922
 62692 62693 BH0111 BH0112 cysS BH0112 TRUE 0.989 0 170.865
 62693 62694 BH0112 BH0113 BH0112 BH0113 TRUE 0.986 3 117.711
 62694 62695 BH0113 BH0114 BH0113 BH0114 TRUE 0.969 2 147.206
 62695 62696 BH0114 BH0115 BH0114 sigH TRUE 0.944 76 52.112
 62696 62697 BH0115 BH0116 sigH rpmG TRUE 0.851 153 12.387
 62697 62698 BH0116 BH0117 rpmG secE TRUE 0.877 240 62.677
 62698 62699 BH0117 BH0118 secE nusG TRUE 0.968 126 217.111
 62699 62700 BH0118 BH0119 nusG rplK TRUE 0.975 155 1067.075
 62700 62701 BH0119 BH0120 rplK rplA TRUE 0.991 121 1405.545
 62701 62702 BH0120 BH0121 rplA rplJ TRUE 0.97 269 1023.625
 62702 62703 BH0121 BH0122 rplJ rplL TRUE 0.997 59 1377.461
 62703 62704 BH0122 BH0123 rplL BH0123 FALSE 0.156 208 0
 62704 62705 BH0123 BH0124 BH0123 BH0124 FALSE 0.165 200 0
 62707 62708 BH0126 BH0127 rpoB rpoC TRUE 0.992 90 276.976
 62708 62709 BH0127 BH0128 rpoC BH0128 TRUE 0.943 107 57.099
 62709 62710 BH0128 BH0129 BH0128 rpsL TRUE 0.968 117 58.046
 62710 62711 BH0129 BH0130 rpsL rpsG TRUE 0.998 47 1336.008
 62711 62712 BH0130 BH0131 rpsG fus TRUE 0.989 110 1154.083
 62712 62713 BH0131 BH0132 fus tuf TRUE 0.992 125 507.907
 62713 62714 BH0132 BH0133 tuf rpsJ TRUE 0.857 923 443.003
 62714 62715 BH0133 BH0134 rpsJ rplC TRUE 0.995 69 1130.087
 62715 62716 BH0134 BH0135 rplC rplD TRUE 0.999 23 1247.382
 62716 62717 BH0135 BH0136 rplD rplW TRUE 0.998 0 1298.16
 62717 62718 BH0136 BH0137 rplW rplB TRUE 0.999 29 1265.34
 62718 62719 BH0137 BH0138 rplB rpsS TRUE 0.996 61 1315.783
 62719 62720 BH0138 BH0139 rpsS rplV TRUE 0.998 33 1226.34
 62720 62721 BH0139 BH0140 rplV rpsC TRUE 0.996 4 1238.527
 62721 62722 BH0140 BH0141 rpsC rplP TRUE 0.996 3 1311.232
 62722 62723 BH0141 BH0142 rplP rpmC TRUE 1 -10 1233.842
 62723 62724 BH0142 BH0143 rpmC rpsQ TRUE 0.999 24 1221.493
 62724 62725 BH0143 BH0144 rpsQ rplN TRUE 0.998 37 1224.739
 62725 62726 BH0144 BH0145 rplN rplX TRUE 0.997 47 1311.556
 62726 62727 BH0145 BH0146 rplX rplE TRUE 0.999 27 1327.873
 62727 62728 BH0146 BH0147 rplE rpsN TRUE 0.998 29 428.149
 62728 62729 BH0147 BH0148 rpsN rpsH TRUE 0.998 30 427.343
 62729 62730 BH0148 BH0149 rpsH rplF TRUE 0.999 32 1510.537
 62730 62731 BH0149 BH0150 rplF rplR TRUE 0.999 32 1446.631
 62731 62732 BH0150 BH0151 rplR rpsE TRUE 0.999 20 1304.46
 62732 62733 BH0151 BH0152 rpsE rpmD TRUE 0.998 14 1091.205
 62733 62734 BH0152 BH0153 rpmD rplO TRUE 0.999 32 1168.913
 62734 62735 BH0153 BH0154 rplO secY TRUE 0.995 0 1384.955
 62735 62736 BH0154 BH0155 secY adk TRUE 0.987 72 620.494
 62736 62737 BH0155 BH0156 adk map TRUE 0.989 -3 131.074
 62737 62738 BH0156 BH0157 map BH0157 TRUE 0.991 19 35.556
 62738 62739 BH0157 BH0158 BH0157 infA TRUE 0.959 5 35.574
 62739 62740 BH0158 BH0159 infA rpmJ TRUE 0.983 68 426.255
 62740 62741 BH0159 BH0160 rpmJ rpsM TRUE 0.998 23 749.136
 62741 62742 BH0160 BH0161 rpsM rpsK TRUE 0.999 19 1437.596
 62742 62743 BH0161 BH0162 rpsK rpoA TRUE 0.97 166 1392.987
 62743 62744 BH0162 BH0163 rpoA rplQ TRUE 0.984 110 1280.795
 62744 62745 BH0163 BH0164 rplQ BH0164 TRUE 0.819 264 72.405
 62745 62746 BH0164 BH0165 BH0164 BH0165 TRUE 0.994 12 206.119
 62746 62747 BH0165 BH0166 BH0165 BH0166 TRUE 1 -15 243.603
 62747 62748 BH0166 BH0167 BH0166 truA TRUE 0.995 18 69.28
 62748 62749 BH0167 BH0168 truA rplM TRUE 0.97 149 118.627
 62749 62750 BH0168 BH0169 rplM rpsI TRUE 0.999 16 1382.241
 62750 62751 BH0169 BH0170 rpsI BH0170 FALSE 0.42 242 -36.947
 62751 62752 BH0170 BH0171 BH0170 BH0171 TRUE 1 -13 493.07
 62752 62753 BH0171 BH0172 BH0171 BH0172 TRUE 0.997 16 319.79
 62753 62754 BH0172 BH0173 BH0172 BH0173