VIMSS Operon Predictions for Bacteroides fragilis NCTC 9343

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 825623 825624 BF0001 BF0002 FALSE 0.251 155 0.008
 825624 825625 BF0002 BF0003 TRUE 0.956 -7 0.008
 825625 825626 BF0003 BF0004 TRUE 0.935 14 0.008
 825626 825627 BF0004 BF0005 TRUE 0.766 34 0
 825627 825628 BF0005 BF0006 TRUE 0.563 61 0
 825628 825629 BF0006 BF0007 FALSE 0.232 190 0.008
 825629 825630 BF0007 BF0008 FALSE 0.055 156 -4.819
 825630 825631 BF0008 BF0009 TRUE 0.968 -19 0.008
 825631 825632 BF0009 BF0010 FALSE 0.481 120 0.008
 825632 825633 BF0010 BF0011 TRUE 0.988 5 7.913
 825635 825636 BF0013 BF0014 TRUE 0.731 58 0.351
 825636 825637 BF0014 BF0015 FALSE 0.291 42 -1.101
 825637 825638 BF0015 BF0016 TRUE 0.668 18 -1.067
 825639 825640 BF0017 BF0018 FALSE 0.467 124 0.008
 825640 825641 BF0018 BF0019 FALSE 0.485 201 -2.413
 825644 825645 BF0022 BF0023 pdhD TRUE 0.937 7 0.425
 825645 825646 BF0023 BF0024 pdhD dacB FALSE 0.367 104 -2.665
 825647 825648 BF0025 BF0026 TRUE 0.774 37 0.008
 825649 825650 BF0027 BF0028 FALSE 0.014 118 -1.067
 825650 825651 BF0028 BF0029 TRUE 0.825 56 0.425
 825653 825654 BF0031 BF0032 TRUE 0.785 36 0.008
 825654 825655 BF0032 BF0033 FALSE 0.444 104 0
 825655 825656 BF0033 BF0034 TRUE 0.594 55 0
 825656 825657 BF0034 BF0035 FALSE 0.283 172 0.008
 825659 825660 BF0037 BF0038 TRUE 0.919 -3 0
 825660 825661 BF0038 BF0039 TRUE 0.963 -27 0
 825661 825662 BF0039 BF0040 FALSE 0.068 329 0
 825662 825663 BF0040 BF0041 FALSE 0.493 82 0
 825663 825664 BF0041 BF0042 TRUE 0.88 1 0
 825664 825665 BF0042 BF0043 FALSE 0.333 146 0
 825665 825666 BF0043 BF0044 FALSE 0.082 131 -4.819
 825666 825667 BF0044 BF0045 TRUE 0.617 -3 -4.819
 825667 825668 BF0045 BF0046 TRUE 0.657 45 0
 825668 825669 BF0046 BF0047 TRUE 0.533 68 0
 825669 825670 BF0047 BF0048 TRUE 0.857 29 0.008
 825672 825673 BF0050 BF0051 TRUE 0.561 77 0.008
 825673 825674 BF0051 BF0052 FALSE 0.13 233 0
 825674 825675 BF0052 BF0053 FALSE 0.473 90 0
 825675 825676 BF0053 BF0055 FALSE 0.28 160 0
 825676 825677 BF0055 BF0056 TRUE 0.92 14 0
 825677 825678 BF0056 BF0057 TRUE 0.861 4 0
 825678 825679 BF0057 BF0058 TRUE 0.516 73 0
 825679 825680 BF0058 BF0059 TRUE 0.881 9 0
 825680 825681 BF0059 BF0060 TRUE 0.671 43 0
 825681 825682 BF0060 BF0061 TRUE 0.964 -31 0
 825682 825683 BF0061 BF0062 TRUE 0.958 -16 0
 825683 825684 BF0062 BF0063 TRUE 0.919 -3 0
 825684 825685 BF0063 BF0064 TRUE 0.882 23 0
 825685 825686 BF0064 BF0065 TRUE 0.694 41 0
 825686 825687 BF0065 BF0066 ftsX TRUE 0.931 0 -1.1
 825687 825688 BF0066 BF0067 ftsX TRUE 0.956 41 21.048
 825688 825689 BF0067 BF0068 TRUE 0.985 7 21.048
 825689 825690 BF0068 BF0069 TRUE 0.983 8 23.431
 825690 825691 BF0069 BF0070 TRUE 0.911 48 -2.16
 825691 825692 BF0070 BF0071 TRUE 0.897 0 -4.264
 825692 825693 BF0071 BF0072 metK FALSE 0.238 383 -5.718
 825693 825694 BF0072 BF0073 metK TRUE 0.614 132 -2.576
 825694 825695 BF0073 BF0074 TRUE 0.957 -3 0.276
 825695 825696 BF0074 BF0075 TRUE 0.978 5 4.606
 825696 825697 BF0075 BF0076 FALSE 0.228 148 -0.883
 825697 825698 BF0076 BF0077 TRUE 0.994 -3 7.725
 825698 825699 BF0077 BF0078 TRUE 0.982 7 3.055
 825699 825700 BF0078 BF0079 tyrS TRUE 0.608 68 0.35
 825702 825703 BFt01 BF0081 FALSE 0.056 374 0
 825703 825704 BF0081 BF0082 FALSE 0.013 124 -1.167
 825704 825705 BF0082 BF0083 gno TRUE 0.936 67 121.215
 825705 825706 BF0083 BF0084 gno TRUE 0.973 27 4.063
 825707 825708 BF0085 BF0086 TRUE 0.866 0 -0.918
 825708 825709 BF0086 BF0087 TRUE 0.992 17 17.714
 825710 825711 BF0088 BF0089 FALSE 0.005 530 -4.819
 825711 825712 BF0089 BF0090 TRUE 0.857 29 0.008
 825713 825714 BF0091 BF0092 TRUE 0.999 21 524.895
 825714 825715 BF0092 BF0093 TRUE 0.915 6 -0.49
 825715 825716 BF0093 BF0094 TRUE 0.935 9 0.121
 825716 825717 BF0094 BF0095 TRUE 0.979 -15 0.425
 825717 825718 BF0095 BF0096 purD TRUE 0.985 0 3.055
 825718 825719 BF0096 BF0097 purD TRUE 0.973 22 2.608
 825719 825720 BF0097 BF0098 TRUE 0.73 136 3.009
 825720 825721 BF0098 BF0099 FALSE 0.444 78 -0.142
 825722 825723 BF0100 BF0101 TRUE 0.984 13 0.425
 825723 825724 BF0101 BF0102 FALSE 0.155 212 0
 825725 825726 BF0103 BF0104 polA FALSE 0.061 270 0.425
 825730 825731 BF0108 BF0109 TRUE 0.993 -7 2.655
 825731 825732 BF0109 BF0110 dtd TRUE 0.991 0 6.58
 825732 825733 BF0110 BF0111 dtd uvrC TRUE 0.609 46 -4.414
 825733 825734 BF0111 BF0112 uvrC apt TRUE 0.877 53 -11.365
 825734 825735 BF0112 BF0113 apt gidA TRUE 0.529 51 -10.668
 825736 825737 BF0114 BF0115 FALSE 0.044 170 -4.819
 825737 825738 BF0115 BF0116 TRUE 0.785 36 0.008
 825738 825739 BF0116 BF0117 TRUE 0.9 18 0.008
 825741 825742 BF0119 BF0120 FALSE 0.395 129 0
 825742 825743 BF0120 BF0121 FALSE 0.304 165 0.008
 825743 825744 BF0121 BF0122 FALSE 0.058 369 0
 825748 825749 BF0126 BF0127 FALSE 0.439 113 0
 825749 825750 BF0127 BF0128 ruvB FALSE 0.478 88 0
 825750 825751 BF0128 BF0129 ruvB TRUE 0.976 -7 1.183
 825751 825752 BF0129 BF0130 TRUE 0.981 3 2.494
 825752 825753 BF0130 BF0131 TRUE 0.925 52 3.055
 825754 825755 BF0132 BF0133 TRUE 0.545 84 0.008
 825755 825756 BF0133 BF0134 FALSE 0.143 244 0.008
 825756 825757 BF0134 BF0135 TRUE 0.546 62 0.231
 825757 825758 BF0135 BF0136 frk FALSE 0.201 185 0.259
 825758 825759 BF0136 BF0137 frk TRUE 0.951 -12 0.368
 825759 825760 BF0137 BF0138 TRUE 0.947 0 0.425
 825764 825765 BF0142 BF0143 uxuA uxuB TRUE 0.897 115 78.094
 825765 825766 BF0143 BF0144 uxuB FALSE 0.197 129 -1.236
 825766 825767 BF0144 BF0145 TRUE 0.726 64 0.425
 825767 825768 BF0145 BF0146 TRUE 0.998 8 0.425
 825768 825769 BF0146 BF0147 TRUE 0.981 5 25.463
 825770 825771 BF0148 BF0149 FALSE 0.255 92 -1.067
 825772 825773 BF0150 BF0151 TRUE 0.937 7 0.425
 825775 825776 BF0153 BF0154 TRUE 0.986 20 0.425
 825776 825777 BF0154 BF0155 TRUE 0.984 17 37.472
 825777 825778 BF0155 BF0156 TRUE 0.986 25 59.322
 825778 825779 BF0156 BF0157 FALSE 0.002 309 0.276
 825780 825781 BF0158 BF0159 TRUE 0.556 110 -1.438
 825782 825783 BF0160 BF0161 cysS FALSE 0.015 111 -5.342
 825783 825784 BF0161 BF0163 cysS FALSE 0.002 555 -4.156
 825784 825785 BF0163 BF0164 TRUE 0.523 64 0.008
 825785 825786 BF0164 BF0165 TRUE 0.974 10 0.008
 825787 825788 BF0166 BF0167 FALSE 0.164 208 0
 825788 825789 BF0167 BF0168 FALSE 0.014 357 0.008
 825789 825790 BF0168 BF0169 TRUE 0.998 -3 8.87
 825790 825791 BF0169 BF0170 mgtA FALSE 0.239 160 -0.009
 825791 825792 BF0170 BF0171 mgtA TRUE 0.586 65 -0.01
 825792 825793 BF0171 BF0172 FALSE 0.173 221 0.008
 825798 825799 BF0177 BF0178 TRUE 0.988 5 109.651
 825799 825800 BF0178 BF0179 acpP TRUE 1 16 1431.94
 825803 825804 BF0182 BF0183 TRUE 0.886 5 0.008
 825805 825806 BF0184 BF0185 TRUE 0.86 28 -0.207
 825806 825807 BF0185 BF0186 TRUE 0.981 3 23.141
 825807 825808 BF0186 BF0187 FALSE 0.478 121 0.008
 825809 825810 BF0188 BF0189 TRUE 0.884 3 -0.066
 825812 825813 BF0191 BF0192 FALSE 0.007 836 -0.12
 825813 825814 BF0192 BF0193 FALSE 0.303 147 0.008
 825814 825815 BF0193 BF0194 TRUE 0.866 8 0.008
 825815 825816 BF0194 BF0195 TRUE 0.99 9 43.302
 825816 825817 BF0195 BF0196 TRUE 0.615 58 -0.018
 825817 825818 BF0196 BF0197 TRUE 0.792 128 -3.687
 825818 825819 BF0197 BF0198 FALSE 0.497 62 -0.478
 825819 825820 BF0198 BF0199 TRUE 0.991 -10 2.206
 825820 825821 BF0199 BF0200 TRUE 0.886 5 0.008
 825822 825823 BF0201 BF0202 TRUE 0.976 20 1.841
 825826 825827 BF0205 BF0206 FALSE 0.323 161 0.008
 825827 825828 BF0206 BF0207 FALSE 0.22 180 0
 825828 825829 BF0207 BF0208 TRUE 0.558 62 0
 825829 825830 BF0208 BF0209 TRUE 0.92 20 0.008
 825830 825831 BF0209 BF0210 fucR FALSE 0.205 205 0.008
 825831 825832 BF0210 BF0211 fucR fucI TRUE 0.538 73 0.425
 825832 825833 BF0211 BF0212 fucI fucO TRUE 0.974 19 8.706
 825833 825834 BF0212 BF0213 fucO fucA TRUE 0.975 -3 20.286
 825834 825835 BF0213 BF0214 fucA fucK TRUE 0.999 18 23.248
 825835 825836 BF0214 BF0215 fucK fucP TRUE 0.994 12 -0.52
 825836 825837 BF0215 BF0217 fucP FALSE 0.002 717 -6.538
 825837 825838 BF0217 BF0218 TRUE 0.994 3 399.426
 825838 825839 BF0218 BF0219 TRUE 0.925 121 1309.664
 825839 825840 BF0219 BF0220 TRUE 0.825 75 -0.472
 825840 825841 BF0220 BF0221 TRUE 0.967 3 -0.489
 825841 825842 BF0221 BF0222 TRUE 0.882 0 0.008
 825842 825843 BF0222 BF0223 TRUE 0.862 24 0.008
 825843 825844 BF0223 BF0224 TRUE 0.999 -3 760.566
 825844 825845 BF0224 BF0225 TRUE 0.993 12 631.624
 825845 825846 BF0225 BF0226 FALSE 0.195 292 -5.036
 825847 825848 BF0227 BF0228 FALSE 0.255 92 -1.067
 825848 825849 BF0228 BF0229 TRUE 0.98 15 1.789
 825849 825850 BF0229 BF0230 TRUE 0.916 16 0
 825850 825851 BF0230 BF0231 TRUE 0.906 19 0
 825851 825852 BF0231 BF0232 TRUE 0.537 87 0.008
 825852 825853 BF0232 BF0233 FALSE 0.004 210 -4.819
 825854 825855 BF0234 BF0235 FALSE 0.467 124 0.008
 825855 825856 BF0235 BF0237 FALSE 0.017 249 -4.819
 825860 825861 BF0241 BF0242 gpmI FALSE 0.198 149 0.008
 825861 825862 BF0242 BF0243 TRUE 0.997 -3 0.008
 825862 825863 BF0243 BF0244 FALSE 0.014 355 0.008
 825863 825864 BF0244 BF0245 TRUE 0.935 -3 0.008
 825865 825866 BF0246 BF0247 rpsT TRUE 0.537 181 -9.844
 825866 825867 BF0247 BFt02 rpsT TRUE 0.731 37 0
 825869 825870 BF0249 BF0250 ftsZ TRUE 0.888 75 1.116
 825870 825871 BF0250 BF0251 ftsZ ftsA TRUE 0.997 27 149.297
 825871 825872 BF0251 BF0252 ftsA ftsQ TRUE 0.918 77 11.863
 825872 825873 BF0252 BF0253 ftsQ murC TRUE 0.98 32 19.875
 825873 825874 BF0253 BF0254 murC murG TRUE 0.999 -3 1509.568
 825874 825875 BF0254 BF0255 murG ftsW TRUE 0.998 -22 806.386
 825875 825876 BF0255 BF0256 ftsW murD TRUE 0.956 59 784.393
 825876 825877 BF0256 BF0257 murD mraY TRUE 0.997 140 1741.402
 825877 825878 BF0257 BF0258 mraY murE TRUE 0.998 86 130.442
 825878 825879 BF0258 BF0259 murE ftsI TRUE 0.999 18 877.931
 825879 825880 BF0259 BF0260 ftsI TRUE 0.982 28 4.782