VIMSS Operon Predictions for Burkholderia pseudomallei K96243

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 743423 743424 BPSS0002 BPSS0003 TRUE 0.622 146 3.209
 743424 743425 BPSS0003 BPSS0004 TRUE 0.922 29 3.209
 743426 743427 BPSS0005 BPSS0006 kbl tdh TRUE 0.992 13 290.876
 743429 743430 BPSS0008 BPSS0009 TRUE 0.944 101 34.631
 743431 743432 BPSS0010 BPSS0011 FALSE 0.019 303 -7.321
 743433 743434 BPSS0012 BPSS0013 FALSE 0 591 0.226
 743434 743435 BPSS0013 BPSS0014 FALSE 0.348 235 -0.018
 743436 743437 BPSS0015 BPSS0016 TRUE 0.577 80 -0.088
 743437 743438 BPSS0016 BPSS0017 TRUE 0.953 63 38.026
 743438 743439 BPSS0017 BPSS0018 adc TRUE 0.973 47 5.971
 743441 743442 BPSS0020 BPSS0021 FALSE 0 709 2.1
 743442 743443 BPSS0021 BPSS0022 TRUE 0.953 40 13.543
 743444 743445 BPSS0023 BPSS0024 FALSE 0.39 150 0.067
 743445 743446 BPSS0024 BPSS0025 FALSE 0.264 174 0.067
 743446 743447 BPSS0025 BPSS0026 TRUE 0.954 -3 0.476
 743447 743448 BPSS0026 BPSS0027 TRUE 0.954 -3 0.476
 743448 743449 BPSS0027 BPSS0028 TRUE 0.926 14 0.476
 743452 743453 BPSS0031 BPSS0032 TRUE 0.91 150 6.427
 743454 743455 BPSS0033 BPSS0034 FALSE 0 775 0.441
 743455 743456 BPSS0034 BPSS0035 TRUE 0.636 -3 -11.464
 743458 743459 BPSS0037 BPSS0038 TRUE 0.71 124 2.885
 743460 743461 BPSS0039 BPSS0040 folE TRUE 0.98 1 -1.831
 743461 743462 BPSS0040 BPSS0041 folE FALSE 0.077 312 -0.45
 743463 743464 BPSS0042 BPSS0043 pobA pcaI FALSE 0.108 208 -5.89
 743464 743465 BPSS0043 BPSS0044 pcaI pcaJ TRUE 0.998 19 92.279
 743465 743466 BPSS0044 BPSS0045 pcaJ pcaB TRUE 0.71 97 -5.336
 743466 743467 BPSS0045 BPSS0046 pcaB TRUE 0.98 13 47.533
 743467 743468 BPSS0046 BPSS0047 pcaC TRUE 0.992 16 72.254
 743468 743469 BPSS0047 BPSS0048 pcaC pcaK TRUE 0.537 179 -2.296
 743470 743471 BPSS0049 BPSS0050 FALSE 0.417 101 -1.883
 743471 743472 BPSS0050 BPSS0051 FALSE 0.028 195 -32.926
 743472 743473 BPSS0051 BPSS0052 TRUE 0.966 -13 2.093
 743473 743474 BPSS0052 BPSS0053 chrA FALSE 0.029 402 10.452
 743474 743475 BPSS0053 BPSS0054 chrA chrB TRUE 0.99 -3 19.875
 743476 743477 BPSS0055 BPSS0056 TRUE 0.914 53 19.143
 743477 743478 BPSS0056 BPSS0057 TRUE 0.916 36 11.525
 743478 743479 BPSS0057 BPSS0058 uvrA FALSE 0 480 -3.006
 743483 743484 BPSS0061 BPSS0062 kgtP TRUE 0.832 53 1.614
 743484 743485 BPSS0062 BPSS0063 dctD TRUE 0.992 -16 6.205
 743487 743488 BPSS0065 BPSS0066 FALSE 0.007 251 0.466
 743488 743489 BPSS0066 BPSS0067 FALSE 0 372 0.466
 743489 743490 BPSS0067 BPSS0068 FALSE 0.003 498 0.005
 743496 743497 BPSS0074 BPSS0075 FALSE 0.007 502 0
 743497 743498 BPSS0075 BPSS0076 TRUE 0.993 -16 44.163
 743498 743499 BPSS0076 BPSS0077 TRUE 0.994 -3 35.743
 743499 743500 BPSS0077 BPSS0077A FALSE 0.001 588 -10.097
 743500 743501 BPSS0077A BPSS0078 FALSE 0.006 329 -5.062
 743501 743502 BPSS0078 BPSS0079 TRUE 0.857 14 0.199
 743502 743503 BPSS0079 BPSS0080 FALSE 0.041 313 1.07
 743503 743504 BPSS0080 BPSS0080a TRUE 0.914 10 0.005
 743505 743506 BPSS0081 BPSS0082 TRUE 0.929 20 -0.379
 743508 743509 BPSS0084 BPSS0085 TRUE 0.891 -46 0
 743509 743510 BPSS0085 BPSS0086 TRUE 0.7 93 0.186
 743510 743511 BPSS0086 BPSS0087 FALSE 0.001 1152 -15.333
 743513 743514 BPSS0089 BPSS0090 FALSE 0.067 262 -1.287
 743515 743516 BPSS0091 BPSS0092 TRUE 0.977 65 30.327
 743516 743517 BPSS0092 BPSS0093 FALSE 0.41 224 59.919
 743517 743518 BPSS0093 BPSS0094 TRUE 0.982 -7 7.242
 743518 743519 BPSS0094 BPSS0095 TRUE 0.783 65 0.426
 743519 743520 BPSS0095 BPSS0096 TRUE 0.953 3 7.588
 743520 743521 BPSS0096 BPSS0097 FALSE 0.002 378 -1.584
 743521 743522 BPSS0097 BPSS0098 TRUE 0.917 34 38.535
 743522 743523 BPSS0098 BPSS0099 FALSE 0.229 200 19.014
 743523 743524 BPSS0099 BPSS0100 FALSE 0.275 188 16.074
 743524 743525 BPSS0100 BPSS0101 TRUE 0.955 6 16.347
 743525 743526 BPSS0101 BPSS0102 TRUE 0.963 -3 6.76
 743526 743527 BPSS0102 BPSS0103 TRUE 0.937 15 6.072
 743527 743528 BPSS0103 BPSS0104 FALSE 0.083 190 0.509
 743528 743529 BPSS0104 BPSS0105 TRUE 0.804 65 0.485
 743529 743530 BPSS0105 BPSS0106 TRUE 0.654 75 0
 743531 743532 BPSS0108 BPSS0109 TRUE 0.846 33 0.413
 743532 743533 BPSS0109 BPSS0110 TRUE 0.8 55 0.426
 743533 743534 BPSS0110 BPSS0111 TRUE 0.909 19 17.612
 743534 743535 BPSS0111 BPSS0112 TRUE 0.956 -3 17.612
 743535 743536 BPSS0112 BPSS0113 TRUE 0.952 2 0.594
 743536 743537 BPSS0113 BPSS0114 TRUE 0.952 -13 2.647
 743537 743538 BPSS0114 BPSS0115 TRUE 0.924 -16 0.029
 743542 743543 BPSS0119 BPSS0120 FALSE 0.001 549 -2.32
 743543 743544 BPSS0120 BPSS0121 FALSE 0.065 361 27.412
 743544 743545 BPSS0121 BPSS0122 FALSE 0.008 476 0
 743545 743546 BPSS0122 BPSS0123 FALSE 0.082 223 0
 743549 743550 BPSS0126 BPSS0127 glxK TRUE 0.946 74 6.459
 743550 743551 BPSS0127 BPSS0128 glxK pyk TRUE 0.513 193 -5.977
 743551 743552 BPSS0128 BPSS0129 pyk FALSE 0.068 247 -2.782
 743552 743553 BPSS0129 BPSS0130 FALSE 0 1061 -26.873
 743553 743554 BPSS0130 BPSS0131 TRUE 0.8 34 0.197
 743554 743555 BPSS0131 BPSS0132 TRUE 0.864 24 0.007
 743555 743556 BPSS0132 BPSS0133 FALSE 0.026 263 -0.382
 743560 743561 BPSS0137 BPSS0138 FALSE 0.187 176 0
 743561 743562 BPSS0138 BPSS0139 FALSE 0.003 712 0
 743563 743564 BPSS0140 BPSS0141 TRUE 0.952 77 49.302
 743564 743565 BPSS0141 BPSS0142 TRUE 0.96 43 60.846
 743565 743566 BPSS0142 BPSS0143 TRUE 0.981 -13 -6.68
 743566 743567 BPSS0143 BPSS0144 FALSE 0.006 907 -0.567
 743567 743568 BPSS0144 BPSS0145 dbpA FALSE 0 832 -0.671
 743568 743569 BPSS0145 BPSS0146 dbpA FALSE 0.35 165 0.392
 743569 743570 BPSS0146 BPSS0147 TRUE 0.82 35 0.156
 743570 743571 BPSS0147 BPSS0148 TRUE 0.911 41 15.255
 743574 743575 BPSS0151 BPSS0152 FALSE 0 492 -9.217
 743576 743577 BPSS0153 BPSS0154 gltI dadA TRUE 0.753 164 1.978
 743577 743578 BPSS0154 BPSS0155 dadA FALSE 0.203 153 11.629
 743578 743579 BPSS0155 BPSS0156 FALSE 0 545 -2.447
 743580 743581 BPSS0157 BPSS0158 FALSE 0 442 0.442
 743581 743582 BPSS0158 BPSS0159 FALSE 0.002 276 -4.5
 743582 743583 BPSS0159 BPSS0160 FALSE 0 602 -10.681
 743583 743584 BPSS0160 BPSS0161 TRUE 0.995 -3 24.893
 743584 743585 BPSS0161 BPSS0162 TRUE 0.989 5 8.15
 743585 743586 BPSS0162 BPSS0163 asnO TRUE 0.796 46 -1.344
 743586 743587 BPSS0163 BPSS0164 asnO TRUE 0.597 29 -2.144
 743587 743588 BPSS0164 BPSS0165 TRUE 0.818 55 0.353
 743589 743590 BPSS0166 BPSS0167 FALSE 0 1222 -26.897
 743590 743591 BPSS0167 BPSS0168 TRUE 0.894 29 1.409
 743591 743592 BPSS0168 BPSS0169 FALSE 0.446 89 -3.663
 743592 743593 BPSS0169 BPSS0170 TRUE 0.935 22 13.869
 743593 743594 BPSS0170 BPSS0171 TRUE 0.82 98 5.895
 743594 743595 BPSS0171 BPSS0172 FALSE 0.346 117 0.215
 743595 743596 BPSS0172 BPSS0173 TRUE 0.888 35 1.821
 743596 743597 BPSS0173 BPSS0174 TRUE 0.861 36 0.763
 743598 743599 BPSS0175 BPSS0176 TRUE 0.96 -3 1.071
 743599 743600 BPSS0176 BPSS0177 TRUE 0.868 41 1.504
 743600 743601 BPSS0177 BPSS0178 TRUE 0.911 31 2.597
 743601 743602 BPSS0178 BPSS0179 TRUE 0.954 12 2.256
 743602 743603 BPSS0179 BPSS0180 TRUE 0.973 -3 7.022
 743603 743604 BPSS0180 BPSS0181 TRUE 0.786 72 0.466
 743604 743605 BPSS0181 BPSS0182 TRUE 0.86 32 0.466
 743605 743606 BPSS0182 BPSS0183 TRUE 0.967 -3 4.435
 743606 743607 BPSS0183 BPSS0184 FALSE 0.161 182 2.996
 743607 743608 BPSS0184 BPSS0185 TRUE 0.819 47 0.466
 743609 743610 BPSS0186 BPSS0187 FALSE 0.001 340 0.466
 743611 743612 BPSS0188 BPSS0189 TRUE 0.788 26 0
 743613 743614 BPSS0190 BPSS0191 FALSE 0.018 284 -8.017
 743614 743615 BPSS0191 BPSS0192 FALSE 0.001 354 -1.149
 743615 743616 BPSS0192 BPSS0193 FALSE 0 815 0.423
 743616 743617 BPSS0193 BPSS0194 FALSE 0.271 187 1.274
 743617 743618 BPSS0194 BPSS0195 TRUE 0.996 -10 40.637
 743618 743619 BPSS0195 BPSS0196 accC TRUE 0.977 -3 21.386
 743619 743620 BPSS0196 BPSS0197 accC TRUE 0.984 6 22.894
 743620 743621 BPSS0197 BPSS0198 TRUE 0.979 -10 20.811
 743622 743623 BPSS0199 BPSS0200 FALSE 0 719 -4.415
 743623 743624 BPSS0200 BPSS0201 pip FALSE 0.001 387 -7.343
 743624 743625 BPSS0201 BPSS0202 pip FALSE 0.291 175 0.14
 743626 743627 BPSS0203 BPSS0204 tsr FALSE 0 910 -27.516
 743627 743628 BPSS0204 BPSS0205 tsr prpR FALSE 0.04 350 0.169
 743629 743630 BPSS0206 BPSS0207 prpB prpC TRUE 0.978 49 237.265
 743630 743631 BPSS0207 BPSS0208 prpC acnA TRUE 0.99 74 131.264
 743631 743632 BPSS0208 BPSS0209 acnA TRUE 0.873 158 140.417
 743634 743635 BPSS0211 BPSS0212 TRUE 0.791 93 1.664
 743635 743636 BPSS0212 BPSS0213 TRUE 0.873 53 4.55
 743636 743637 BPSS0213 BPSS0214 TRUE 0.848 79 4.55
 743637 743638 BPSS0214 BPSS0215 tar FALSE 0.046 222 0.476
 743642 743643 BPSS0219 BPSS0220 FALSE 0.006 320 0.142
 743646 743647 BPSS0223 BPSS0224 FALSE 0.165 201 0.019
 743648 743649 BPSS0225 BPSS0226 FALSE 0.001 774 0.083
 743649 743650 BPSS0226 BPSS0227 FALSE 0.221 155 -0.621
 743651 743652 BPSS0228 BPSS0229 FALSE 0.002 326 2.015
 743652 743653 BPSS0229 BPSS0230 FALSE 0 581 -3.139
 743653 743654 BPSS0230 BPSS0231 FALSE 0.285 125 -2.858
 743658 743659 BPSS0234 BPSS0235 TRUE 0.996 36 285.792
 743662 743663 BPSS0238 BPSS0239 TRUE 0.946 13 -9.332
 743664 743665 BPSS0240 BPSS0241 FALSE 0.105 455 209.8
 743665 743666 BPSS0241 BPSS0242 FALSE 0.267 368 248.334
 743666 743667 BPSS0242 BPSS0243 TRUE 0.998 -3 114.595
 743667 743668 BPSS0243 BPSS0244 TRUE 0.986 57 79.503
 743668 743669 BPSS0244 BPSS0245 FALSE 0 475 2.106
 743669 743670 BPSS0245 BPSS0246 FALSE 0.121 162 -6.186
 743671 743672 BPSS0247 BPSS0248 TRUE 0.994 5 6.883
 743672 743673 BPSS0248 BPSS0249 TRUE 0.942 27 3.368
 743673 743674 BPSS0249 BPSS0250 TRUE 0.987 -10 34.817
 743674 743675 BPSS0250 BPSS0251 TRUE 0.917 14 0.414
 743675 743676 BPSS0251 BPSS0252 TRUE 0.518 67 -2.944
 743677 743678 BPSS0253 BPSS0254 TRUE 0.902 35 -3.469
 743679 743680 BPSS0255 BPSS0256 rbsC TRUE 0.992 9 35.3
 743680 743681 BPSS0256 BPSS0257 rbsC TRUE 0.987 32 38.988
 743681 743682 BPSS0257 BPSS0258 TRUE 0.973 12 12.876
 743682 743683 BPSS0258 BPSS0259 TRUE 0.944 66 15.477
 743683 743684 BPSS0259 BPSS0260 TRUE 0.957 5 18.987
 743684 743685 BPSS0260 BPSS0261 TRUE 0.994 -3 79.546
 743686 743687 BPSS0262 BPSS0263 TRUE 0.947 -3 0.366
 743687 743688 BPSS0263 BPSS0264 FALSE 0 420 1.024
 743688 743689 BPSS0264 BPSS0265 FALSE 0.079 208 -0.563
 743692 743693 BPSS0268 BPSS0268A TRUE 0.834 25 0.005
 743694 743695 BPSS0269 BPSS0270 argT FALSE 0.124 234 1.12
 743696 743697 BPSS0271 BPSS0272 FALSE 0.023 288 2.734
 743698 743699 BPSS0273 BPSS0274 FALSE 0.037 350 -12.674
 743700 743701 BPSS0275 BPSS0276 pcaF aer FALSE 0 783 -19.496
 743702 743703 BPSS0277 BPSS0278 FALSE 0.001 418 0.392
 743703 743704 BPSS0278 BPSS0279 TRUE 0.948