VIMSS Operon Predictions for Bacillus licheniformis DSM 13

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 726055 726056 BLi00001 BLi00002 dnaA dnaN TRUE 0.969 177 963.175
 726056 726057 BLi00002 BLi00003 dnaN yaaA TRUE 0.807 168 80.762
 726057 726058 BLi00003 BLi00004 yaaA recF TRUE 0.987 17 83.517
 726058 726059 BLi00004 BLi00005 recF yaaB TRUE 0.981 18 46.415
 726059 726060 BLi00005 BLi00006 yaaB gyrB TRUE 0.906 60 40.88
 726060 726061 BLi00006 BLi00007 gyrB gyrA TRUE 0.991 191 242.379
 726061 726062 BLi00007 BLi00008 gyrA FALSE 0.03 342 0
 726062 726063 BLi00008 BLi00009 FALSE 0.137 101 0
 726063 726064 BLi00009 BLi00010 TRUE 0.667 12 0
 726064 726065 BLi00010 BLi00011 FALSE 0.249 71 0
 726065 726066 BLi00011 BLi00012 FALSE 0.127 124 0
 726068 726069 BLi00014 BLi00015 guaB dacA FALSE 0.315 155 1.004
 726069 726070 BLi00015 BLi00016 dacA yaaD FALSE 0.264 187 2.556
 726070 726071 BLi00016 BLi00017 yaaD yaaE TRUE 0.998 22 300.253
 726071 726072 BLi00017 BLi00018 yaaE serS FALSE 0.19 328 -13.285
 726073 726074 BLi00019 BLi00020 yojA ysfB TRUE 0.815 90 75.079
 726074 726075 BLi00020 BLi00021 ysfB TRUE 0.521 30 -1.126
 726077 726078 BLi00023 BLi00024 dck dgk TRUE 1 -3 36.817
 726078 726079 BLi00024 BLi00025 dgk ydhD FALSE 0.122 87 -4.715
 726079 726080 BLi00025 BLi00026 ydhD yaaI FALSE 0.489 38 -4.147
 726081 726082 BLi00027 BLi00028 yaaJ dnaX FALSE 0.094 486 14.229
 726082 726083 BLi00028 BLi00029 dnaX yaaK TRUE 0.989 27 199.46
 726083 726084 BLi00029 BLi00030 yaaK recR TRUE 0.991 14 1043.083
 726084 726085 BLi00030 BLi00031 recR yaaL TRUE 0.973 21 26.421
 726085 726086 BLi00031 BLi00032 yaaL bofA TRUE 0.588 65 12.395
 726086 726087 BLi00032 BLi00033 bofA FALSE 0.047 291 0
 726087 726088 BLi00033 BLi00034 FALSE 0.137 101 0
 726088 726089 BLi00034 BLi00035 TRUE 0.667 12 0
 726089 726090 BLi00035 BLi00036 FALSE 0.249 71 0
 726090 726091 BLi00036 BLi00037 FALSE 0.127 125 0
 726091 726092 BLi00037 BLi00038 xpaC FALSE 0.012 554 0
 726092 726093 BLi00038 BLi00039 xpaC yaaN TRUE 0.892 16 14.912
 726093 726094 BLi00039 BLi00040 yaaN yaaO FALSE 0.157 63 -13.318
 726094 726095 BLi00040 BLi00041 yaaO tmk TRUE 0.985 -3 33.693
 726095 726096 BLi00041 BLi00042 tmk yaaQ TRUE 0.885 76 77.027
 726096 726097 BLi00042 BLi00043 yaaQ yaaR TRUE 0.949 12 5.823
 726097 726098 BLi00043 BLi00044 yaaR holB TRUE 0.894 12 4.022
 726098 726099 BLi00044 BLi00045 holB yaaT TRUE 0.992 3 109.128
 726099 726100 BLi00045 BLi00046 yaaT yabA TRUE 0.982 15 67.346
 726100 726101 BLi00046 BLi00047 yabA yabB TRUE 0.866 65 32.576
 726101 726102 BLi00047 BLi00048 yabB yazA TRUE 0.991 -13 126.308
 726102 726103 BLi00048 BLi00049 yazA yabC TRUE 0.974 14 27.091
 726105 726106 BLi00051 BLi00052 metS yabD TRUE 0.895 85 165.876
 726106 726107 BLi00052 BLi00053 yabD yabE TRUE 0.679 117 11.292
 726107 726108 BLi00053 BLi00054 yabE rnmV TRUE 0.644 168 9.747
 726108 726109 BLi00054 BLi00055 rnmV ksgA TRUE 0.994 -7 146.416
 726109 726110 BLi00055 BLi00056 ksgA yabG TRUE 0.746 142 14.093
 726110 726111 BLi00056 BLi00057 yabG veg TRUE 0.552 225 30.793
 726111 726112 BLi00057 BLi00058 veg sspF FALSE 0.337 157 10.921
 726112 726113 BLi00058 BLi00059 sspF ispE FALSE 0.144 298 9.833
 726113 726114 BLi00059 BLi00060 ispE purR TRUE 0.931 57 39.053
 726114 726115 BLi00060 BLi00061 purR yabJ TRUE 0.911 18 20.245
 726115 726116 BLi00061 BLi00062 yabJ spoVG FALSE 0.356 180 21.56
 726116 726117 BLi00062 BLi00063 spoVG gcaD TRUE 0.611 275 63.12
 726117 726118 BLi00063 BLi00064 gcaD prs TRUE 0.99 21 182.224
 726118 726119 BLi00064 BLi00065 prs ctc TRUE 0.912 81 530.47
 726119 726120 BLi00065 BLi00066 ctc spoVC TRUE 0.981 117 750.989
 726120 726121 BLi00066 BLi00067 spoVC yabK TRUE 0.686 57 14.316
 726121 726122 BLi00067 BLi00068 yabK mfd TRUE 0.604 65 14.054
 726122 726123 BLi00068 BLi00069 mfd spoVT TRUE 0.927 138 18.722
 726123 726124 BLi00069 BLi00070 spoVT yabM FALSE 0.26 214 14.107
 726124 726125 BLi00070 BLi00071 yabM yabN TRUE 0.954 -10 14.965
 726125 726126 BLi00071 BLi00072 yabN yabO TRUE 0.982 7 41.323
 726126 726127 BLi00072 BLi00073 yabO yabP TRUE 0.843 77 37.789
 726127 726128 BLi00073 BLi00074 yabP yabQ TRUE 0.944 -3 13.778
 726128 726129 BLi00074 BLi00075 yabQ divIC TRUE 0.89 17 13.134
 726129 726130 BLi00075 BLi00076 divIC yabR TRUE 0.834 80 46.107
 726130 726131 BLi00076 BLi00077 yabR FALSE 0.137 151 0
 726131 726132 BLi00077 BLi00078 TRUE 0.675 11 0
 726132 726133 BLi00078 BLi00080 spoIIE FALSE 0.095 210 0
 726133 726134 BLi00080 BLi00081 spoIIE yabS FALSE 0.41 77 4.896
 726134 726135 BLi00081 BLi00082 yabS yabT TRUE 0.922 -31 4.896
 726135 726136 BLi00082 BLi00083 yabT yacA FALSE 0.301 103 1.551
 726136 726137 BLi00083 BLi00084 yacA hprT TRUE 0.993 -16 131.228
 726137 726138 BLi00084 BLi00085 hprT ftsH TRUE 0.841 97 189.038
 726138 726139 BLi00085 BLi00086 ftsH yacB TRUE 0.726 203 4.51
 726139 726140 BLi00086 BLi00087 yacB yacC TRUE 0.896 12 13.446
 726140 726141 BLi00087 BLi00088 yacC yacD TRUE 0.926 53 1.473
 726141 726142 BLi00088 BLi00089 yacD cysK FALSE 0.439 76 0.369
 726142 726143 BLi00089 BLi00090 cysK pabB TRUE 0.723 197 -4.903
 726143 726144 BLi00090 BLi00091 pabB pabA TRUE 1 -3 278.605
 726144 726145 BLi00091 BLi00092 pabA pabC TRUE 0.997 -3 14.415
 726145 726146 BLi00092 BLi00093 pabC sul TRUE 0.977 13 14.415
 726146 726147 BLi00093 BLi00094 sul folB TRUE 0.999 -28 264.031
 726147 726148 BLi00094 BLi00095 folB folK TRUE 0.999 -3 274.055
 726148 726149 BLi00095 BLi00096 folK yacF FALSE 0.368 178 -14.175
 726149 726150 BLi00096 BLi00097 yacF lysS TRUE 0.961 85 14.576
 726150 726151 BLi00097 BLi00098 lysS FALSE 0.042 302 0
 726151 726152 BLi00098 BLi00099 FALSE 0.134 173 0
 726152 726153 BLi00099 BLi00100 FALSE 0.127 125 0
 726153 726154 BLi00100 BLi00101 ctsR FALSE 0.128 178 0
 726154 726155 BLi00101 BLi00102 ctsR mcsA TRUE 0.983 15 72.795
 726155 726156 BLi00102 BLi00103 mcsA mcsB TRUE 0.993 0 106.268
 726156 726157 BLi00103 BLi00104 mcsB clpC TRUE 0.993 -3 76.734
 726157 726158 BLi00104 BLi00105 clpC radA TRUE 0.962 80 60.545
 726158 726159 BLi00105 BLi00106 radA yacK TRUE 0.988 4 130.767
 726159 726160 BLi00106 BLi00107 yacK yacL TRUE 0.748 132 26.115
 726160 726161 BLi00107 BLi00108 yacL yacM TRUE 0.983 17 44.556
 726161 726162 BLi00108 BLi00109 yacM yacN TRUE 1 -7 707.019
 726162 726163 BLi00109 BLi00110 yacN gltX TRUE 0.844 82 -2.042
 726163 726164 BLi00110 BLi00111 gltX cysE FALSE 0.218 302 37.428
 726164 726165 BLi00111 BLi00112 cysE cysS TRUE 0.994 -3 154.841
 726165 726166 BLi00112 BLi00113 cysS yazC TRUE 0.992 3 170.574
 726166 726167 BLi00113 BLi00114 yazC yacO TRUE 0.999 -3 112.092
 726167 726168 BLi00114 BLi00115 yacO yacP TRUE 0.987 6 145.902
 726168 726169 BLi00115 BLi00116 yacP sigH TRUE 0.907 64 50.719
 726169 726170 BLi00116 BLi00117 sigH rpmGB FALSE 0.459 83 13.471
 726170 726171 BLi00117 BLi00118 rpmGB secE TRUE 0.968 36 46.75
 726171 726172 BLi00118 BLi00119 secE nusG TRUE 0.862 178 280.533
 726172 726173 BLi00119 BLi00120 nusG rplK TRUE 0.89 170 1220.15
 726173 726174 BLi00120 BLi00121 rplK rplA TRUE 0.986 102 1589.516
 726174 726175 BLi00121 BLi00122 rplA rplJ TRUE 0.963 262 1157.905
 726175 726176 BLi00122 BLi00123 rplJ rplL TRUE 0.998 45 1536.879
 726176 726177 BLi00123 BLi00124 rplL ybxB TRUE 0.915 140 22.724
 726177 726178 BLi00124 BLi00125 ybxB rpoB FALSE 0.408 251 20.383
 726178 726179 BLi00125 BLi00126 rpoB rpoC TRUE 0.998 60 321.387
 726179 726180 BLi00126 BLi00127 rpoC ybxF TRUE 0.771 117 52.196
 726180 726181 BLi00127 BLi00128 ybxF rpsL TRUE 0.938 105 53.145
 726181 726182 BLi00128 BLi00129 rpsL rpsG TRUE 0.994 166 1503.178
 726182 726183 BLi00129 BLi00130 rpsG fusA TRUE 0.994 50 1369.86
 726183 726184 BLi00130 BLi00131 fusA tufA TRUE 0.995 120 600.287
 726184 726185 BLi00131 BLi00132 tufA rpsJ TRUE 0.878 322 502.318
 726185 726186 BLi00132 BLi00133 rpsJ rplC TRUE 0.998 39 1272.225
 726186 726187 BLi00133 BLi00134 rplC rplD TRUE 0.999 28 1414.219
 726187 726188 BLi00134 BLi00135 rplD rplW TRUE 1 0 1458.521
 726188 726189 BLi00135 BLi00136 rplW rplB TRUE 0.999 32 1434.666
 726189 726190 BLi00136 BLi00137 rplB rpsS TRUE 0.996 58 1482.53
 726190 726191 BLi00137 BLi00138 rpsS rplV TRUE 0.999 18 1373.126
 726191 726192 BLi00138 BLi00139 rplV rpsC TRUE 0.999 4 1364.93
 726192 726193 BLi00139 BLi00140 rpsC rplP TRUE 0.999 2 1474.941
 726193 726194 BLi00140 BLi00141 rplP rpmC TRUE 1 -10 1354.078
 726194 726195 BLi00141 BLi00142 rpmC rpsQ TRUE 0.999 25 1343.645
 726195 726196 BLi00142 BLi00143 rpsQ rplN TRUE 0.998 41 1361.324
 726196 726197 BLi00143 BLi00144 rplN rplX TRUE 0.998 36 1467.74
 726197 726198 BLi00144 BLi00145 rplX rplE TRUE 0.999 26 1482.807
 726198 726199 BLi00145 BLi00146 rplE rpsN TRUE 0.999 23 316.985
 726199 726200 BLi00146 BLi00147 rpsN rpsH TRUE 0.998 32 315.655
 726200 726201 BLi00147 BLi00148 rpsH rplF TRUE 0.999 30 1688.556
 726201 726202 BLi00148 BLi00149 rplF rplR TRUE 0.999 32 1622.121
 726202 726203 BLi00149 BLi00150 rplR rpsE TRUE 0.999 19 1455.927
 726203 726204 BLi00150 BLi00151 rpsE rpmD TRUE 0.999 14 1162.739
 726204 726205 BLi00151 BLi00152 rpmD rplO TRUE 1 31 1259.7
 726205 726206 BLi00152 BLi00153 rplO secY TRUE 0.995 2 1556.877
 726206 726207 BLi00153 BLi00154 secY adk TRUE 0.971 54 685.368
 726207 726208 BLi00154 BLi00155 adk map TRUE 0.993 -3 170.37
 726208 726209 BLi00155 BLi00156 map TRUE 0.992 11 16.774
 726209 726210 BLi00156 BLi00157 infA TRUE 0.996 -22 16.774
 726210 726211 BLi00157 BLi00158 infA rpmJ TRUE 0.985 34 474.716
 726211 726212 BLi00158 BLi00159 rpmJ rpsM TRUE 0.997 23 851.52
 726212 726213 BLi00159 BLi00160 rpsM rpsK TRUE 0.999 21 1622.803
 726213 726214 BLi00160 BLi00161 rpsK rpoA TRUE 0.88 175 1563.833
 726214 726215 BLi00161 BLi00162 rpoA rplQ TRUE 0.932 78 1432.486
 726215 726216 BLi00162 BLi00163 rplQ ybxA TRUE 0.779 142 68.365
 726216 726217 BLi00163 BLi00164 ybxA ybaE TRUE 0.999 -24 196.88
 726217 726218 BLi00164 BLi00165 ybaE ybaF TRUE 0.999 -3 219.079
 726218 726219 BLi00165 BLi00166 ybaF truA TRUE 0.986 11 70.232
 726219 726220 BLi00166 BLi00167 truA rplM TRUE 0.961 161 137.126
 726220 726221 BLi00167 BLi00168 rplM rpsI TRUE 0.999 21 1553.862
 726223 726224 BLi00170 BLi00171 ybaK cwlD FALSE 0.369 93 12.894
 726224 726225 BLi00171 BLi00172 cwlD ybaL FALSE 0.419 86 12.811
 726229 726230 BLi00176 BLi00177 FALSE 0.134 173 0
 726230 726231 BLi00177 BLi00178 FALSE 0.127 125 0
 726231 726232 BLi00178 BLi00179 FALSE 0.488 44 0
 726232 726233 BLi00179 BLi00180 TRUE 0.785 3 0
 726235 726236 BLi00182 BLi00183 ybaS FALSE 0.076 112 -1.602
 726236 726237 BLi00183 BLi00184 ybaS yxaJ FALSE 0.43 35 -3.343
 726238 726239 BLi00185 BLi00186 ybbC FALSE 0.148 106 -0.255
 726239 726240 BLi00186 BLi00187 ybbC ybbD TRUE 0.978 0 5.4
 726240 726241 BLi00187 BLi00188 ybbD ybbE TRUE 0.907 16 1.095
 726241 726242 BLi00188 BLi00189 ybbE ybbF TRUE 0.666 68 46.963
 726242 726243 BLi00189 BLi00190 ybbF ybbH TRUE 0.964 27 4.892
 726243 726244 BLi00190 BLi00191 ybbH ybbI TRUE 0.986 19 71.876
 726244 726245 BLi00191 BLi00192 ybbI ybbK FALSE 0.06 175 -9.027
 726246 726247 BLi00193 BLi00194 FALSE 0.137 151 0
 726247 726248 BLi00194 BLi00195 FALSE 0.363 59 0
 726248 726249 BLi00195 BLi00196 TRUE 0.691 9 0
 726249 726250 BLi00196 BLi00197 TRUE 0.75 5 0
 726250 726251 BLi00197 BLi00198 FALSE 0.128 126 0
 726251 726252 BLi00198 BLi00199 sigW FALSE 0.065 226 -1.658
 726252 726253 BLi00199 BLi00200 sigW ybbM TRUE 0.971 14 5.853
 726253 726254 BLi00200 BLi00201 ybbM ybbP FALSE 0.27 166 5.853
 726254 726255 BLi00201 BLi00202 ybbP ybbR TRUE 0.993 -7 72.568
 726255 726256 BLi00202 BLi00203 ybbR ybbT TRUE 0.988 -3 22.772
 726256 726257 BLi00203 BLi00204 ybbT glmS FALSE 0.127 443 70.417
 726257 726258 BLi00204 BLi00205 glmS FALSE 0.126 191 -0.172