VIMSS Operon Predictions for Bartonella henselae str. Houston-1

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 600459 600460 BH00010 BH00020 maf-1 TRUE 0.987 12 45.289
 600460 600461 BH00020 BH00030 maf-1 aroE TRUE 0.987 -7 62.217
 600461 600462 BH00030 BH00040 aroE coaE TRUE 0.996 -3 61.993
 600462 600463 BH00040 BH00050 coaE dnaQ TRUE 0.996 5 89.898
 600463 600464 BH00050 BH00060 dnaQ polA FALSE 0.267 329 -24.227
 600465 600466 BH00070 BH00080 FALSE 0.147 92 -6.363
 600466 600467 BH00080 BH00090 FALSE 0.006 615 -0.443
 600467 600468 BH00090 BH00100 lspA FALSE 0.014 535 -1.299
 600468 600469 BH00100 BH00110 lspA TRUE 0.987 -3 3.505
 600469 600470 BH00110 BH00120 TRUE 0.967 -12 60.463
 600470 600471 BH00120 BH00130 FALSE 0.03 168 3.45
 600471 600472 BH00130 BH00140 ihfB TRUE 0.977 9 15.58
 600473 600474 BH00150 BH00160 TRUE 0.734 112 21.086
 600474 600475 BH00160 BH00170 TRUE 0.998 7 168.236
 600475 600476 BH00170 BH00180 ptsN FALSE 0.018 1242 52.904
 600476 600477 BH00180 BH00190 ptsN FALSE 0.001 1010 -22.484
 600477 600478 BH00190 BH00200 TRUE 0.926 41 43.611
 600480 600481 BH00220 BH00230 FALSE 0.343 -376 0
 600481 600482 BH00230 BH00240 lysS FALSE 0.011 698 0
 600482 600483 BH00240 BH00250 lysS prfC TRUE 0.93 0 -15.348
 600484 600485 BH00260 BH00270 trxA addA TRUE 0.958 96 66.529
 600485 600486 BH00270 BH00280 addA TRUE 0.996 -3 67.861
 600488 600489 BH00300 BH00310 ahcY TRUE 0.516 38 17.603
 600489 600490 BH00310 BH00320 ahcY FALSE 0.003 1503 -20.015
 600490 600491 BH00320 BH00330 folC TRUE 0.713 38 -19.151
 600491 600492 BH00330 BH00340 folC accD TRUE 0.999 4 856.816
 600492 600493 BH00340 BH00350 accD FALSE 0.018 558 0
 600493 600494 BH00350 BH00360 FALSE 0.111 271 0
 600496 600497 BH00380 BH00390 dfp aarF TRUE 0.862 71 14.597
 600497 600498 BH00390 BH00400 aarF ubiE TRUE 0.997 4 690.041
 600498 600499 BH00400 BH00410 ubiE gyrB FALSE 0.185 117 -25.113
 600499 600500 BH00410 BH00420 gyrB FALSE 0.01 730 0
 600503 600504 BH00450 BH00460 TRUE 0.98 0 9.819
 600504 600505 BH00460 BH00470 FALSE 0.014 630 0
 600506 600507 BH00480 BH00490 msbA infC FALSE 0.102 223 -15.906
 600508 600509 BH00500 BH00510 FALSE 0.359 37 -16.92
 600509 600510 BH00510 BH00520 dapE FALSE 0.35 223 -17.539
 600511 600512 BH00530 BH00540 hemN TRUE 0.998 -3 518.625
 600513 600514 BH00550 BH00560 hrcA grpE TRUE 0.984 136 439.475
 600515 600516 BH00570 BH00580 ptsH FALSE 0.008 594 -8.458
 600516 600517 BH00580 BH00590 ptsH TRUE 0.99 85 207.125
 600517 600518 BH00590 BH00600 hprK TRUE 0.779 128 25.362
 600518 600519 BH00600 BH00610 hprK batS TRUE 0.956 24 25.687
 600519 600520 BH00610 BH00620 batS batR TRUE 0.981 40 73.626
 600523 600524 BH00650 BH00660 dnaK dnaJ1 TRUE 0.996 159 1512.294
 600524 600525 BH00660 BH00670 dnaJ1 FALSE 0.004 1070 0
 600527 600528 BH00690 BH00700 argB TRUE 0.753 23 -10.992
 600528 600529 BH00700 BH00710 lepA FALSE 0.009 578 -10.311
 600532 600533 BH00740 BH00750 truA fmt TRUE 0.996 2 38.985
 600533 600534 BH00750 BH00760 fmt def TRUE 1 0 1311.311
 600535 600536 BH00770 BH00780 FALSE 0.113 109 -7.324
 600537 600538 BH00790 BH00800 ibpA1 TRUE 0.942 20 17.983
 600539 600540 BH00810 BH00820 nth rpmI FALSE 0.167 149 -27.697
 600540 600541 BH00820 BH00830 rpmI rplT TRUE 0.999 34 1836.084
 600541 600542 BH00830 BH00840 rplT pheS TRUE 0.991 94 886.159
 600542 600543 BH00840 BH00850 pheS pheT TRUE 1 32 1792.025
 600543 600544 BH00850 BH00860 pheT yfeA FALSE 0.058 290 -8.127
 600544 600545 BH00860 BH00870 yfeA yfeB TRUE 0.999 -3 596.819
 600545 600546 BH00870 BH00880 yfeB yfeC TRUE 1 0 735.248
 600546 600547 BH00880 BH00890 yfeC yfeD TRUE 0.999 8 211.651
 600547 600548 BH00890 BH00900 yfeD FALSE 0.011 398 -2.338
 600549 600550 BH00910 BH00920 pncB FALSE 0.206 131 -2.421
 600550 600551 BH00920 BH00930 rpsA FALSE 0.132 195 -8.42
 600551 600552 BH00930 BH00940 rpsA cmk TRUE 0.987 133 890.693
 600552 600553 BH00940 BH00950 cmk aroA TRUE 0.999 -3 495.483
 600554 600555 BH00960 BH00970 FALSE 0.298 117 0
 600555 600556 BH00970 BH00980 ilvD FALSE 0.006 863 0
 600556 600557 BH00980 BH00990 ilvD FALSE 0.275 143 0
 600560 600561 BH01020 BH01030 secB TRUE 0.737 146 18.846
 600562 600563 BH01040 BH01050 TRUE 0.511 63 -9.847
 600563 600564 BH01050 BH01060 FALSE 0.007 839 0
 600565 600566 BH01070 BH01080 FALSE 0.007 825 0
 600566 600567 BH01080 BH01090 argD FALSE 0.01 982 0.962
 600569 600570 BH01110 BH01120 dsbE TRUE 0.797 -25 0.036
 600570 600571 BH01120 BH01130 ccmC TRUE 0.926 13 0.036
 600571 600572 BH01130 BH01140 ccmC ccmB TRUE 0.998 47 732.115
 600572 600573 BH01140 BH01150 ccmB ccmA TRUE 1 -3 737.647
 600574 600575 BH01160 BH01170 acnA rpsT FALSE 0.257 224 -25.693
 600575 600576 BH01170 BH01180 rpsT dnaA FALSE 0.023 705 50.423
 600576 600577 BH01180 BH01190 dnaA dnaN TRUE 0.992 197 1146.54
 600577 600578 BH01190 BH01200 dnaN recF TRUE 0.999 21 1215.881
 600578 600579 BH01200 BH01210 recF aroQ FALSE 0.357 48 -19.282
 600579 600580 BH01210 BH01220 aroQ cyoA FALSE 0.181 124 -13.144
 600580 600581 BH01220 BH01230 cyoA cyoB TRUE 0.996 75 688.31
 600581 600582 BH01230 BH01240 cyoB cyoC TRUE 1 -3 901.024
 600582 600583 BH01240 BH01250 cyoC cyoD TRUE 0.987 0 0.958
 600583 600584 BH01250 BH01260 cyoD gpsA FALSE 0.04 439 0.002
 600585 600586 BH01270 BH01280 fabI1 fabB TRUE 0.95 49 26.839
 600586 600587 BH01280 BH01290 fabB fabA TRUE 0.993 58 240.589
 600589 600590 BH01310 BH01320 rpsU FALSE 0.001 1179 -10.081
 600593 600594 BH01350 BH01360 acrD TRUE 0.998 -3 452.728
 600594 600595 BH01360 BH01370 acrD gpi FALSE 0.092 183 -14.487
 600597 600598 BH01390 BH01400 rplU rpmA TRUE 0.995 15 134.267
 600598 600599 BH01400 BH01410 rpmA fruB FALSE 0.002 1420 -9.597
 600599 600600 BH01410 BH01420 fruB FALSE 0.03 444 0
 600601 600602 BH01430 BH01440 TRUE 0.592 -19 0
 600602 600603 BH01440 BH01450 FALSE 0.402 69 0
 600606 600607 BH01480 BH01490 badA1 FALSE 0.005 1137 0
 600607 600608 BH01490 BH01500 badA1 FALSE 0.002 2004 0
 600608 600609 BH01500 BH01510 badA1 FALSE 0.009 757 0
 600609 600610 BH01510 BH01520 badA1 FALSE 0.463 -45 0
 600610 600611 BH01520 BH01530 TRUE 0.728 18 0
 600611 600612 BH01530 BH01540 ppx FALSE 0.002 913 -0.572
 600612 600613 BH01540 BH01550 ppx ftsJ TRUE 0.964 34 44.865
 600613 600614 BH01550 BH01560 ftsJ cgtA FALSE 0.001 973 -19.938
 600614 600615 BH01560 BH01570 cgtA proB TRUE 0.999 6 510.113
 600615 600616 BH01570 BH01580 proB proA TRUE 0.998 68 766.232
 600616 600617 BH01580 BH01590 proA nadD TRUE 0.973 30 44.232
 600617 600618 BH01590 BH01600 nadD FALSE 0.233 349 0.055
 600618 600619 BH01600 BH01610 TRUE 0.991 2 43.682
 600619 600620 BH01610 BH01620 filA TRUE 0.812 97 22.468
 600620 600621 BH01620 BH01630 filA ctpA TRUE 0.997 -10 243.566
 600621 600622 BH01630 BH01640 ctpA invA TRUE 0.913 41 4.836
 600622 600623 BH01640 BH01650 invA invB FALSE 0.099 140 -6.745
 600623 600624 BH01650 BH01660 invB FALSE 0.016 330 -3.928
 600624 600625 BH01660 BH01670 TRUE 0.962 31 24.785
 600625 600626 BH01670 BH01680 FALSE 0.106 275 0
 600627 600628 BH01690 BH01700 ppa typA FALSE 0.273 67 -17.689
 600628 600629 BH01700 BH01710 typA mgtE FALSE 0.001 1441 -22.788
 600631 600632 BH01730 BH01740 TRUE 0.513 16 -3.823
 600633 600634 BH01750 BH01760 galU TRUE 0.68 34 -24.577
 600636 600637 BH01780 BH01790 FALSE 0.012 428 0.002
 600637 600638 BH01790 BH01800 guaB FALSE 0.184 152 -8.336
 600638 600639 BH01800 BH01810 guaB sun1 FALSE 0.011 859 26.552
 600639 600640 BH01810 BH01820 sun1 guaA FALSE 0.173 132 -3.49
 600640 600641 BH01820 BH01830 guaA FALSE 0.343 141 -10.146
 600642 600643 BH01840 BH01850 ugpC ugpE TRUE 0.999 3 398.974
 600643 600644 BH01850 BH01860 ugpE ugpA TRUE 0.999 11 748.154
 600644 600645 BH01860 BH01870 ugpA ugpB TRUE 0.991 108 634.436
 600645 600646 BH01870 BH01880 ugpB FALSE 0.04 399 0
 600646 600647 BH01880 BH01890 FALSE 0.01 707 0
 600647 600648 BH01890 BH01900 TRUE 0.999 2 292.428
 600648 600649 BH01900 BH01910 TRUE 0.999 4 189.216
 600650 600651 BH01920 BH01930 nrdH nrdI TRUE 0.998 0 282.277
 600651 600652 BH01930 BH01940 nrdI nrdE TRUE 0.995 -18 445.56
 600652 600653 BH01940 BH01950 nrdE nrdF TRUE 1 12 899.958
 600654 600655 BH01960 BH01970 hemK prfA TRUE 1 -3 1518.438
 600655 600656 BH01970 BH01980 prfA fur2 FALSE 0.256 195 -20.614
 600656 600657 BH01980 BH01990 fur2 secA TRUE 0.587 18 -23.251
 600658 600659 BH02000 BH02010 argJ TRUE 0.895 115 51.373
 600659 600660 BH02010 BH02020 argJ mutT TRUE 0.918 135 177.598
 600661 600662 BH02030 BH02040 pepA TRUE 0.856 142 60.825
 600662 600663 BH02040 BH02050 pepA coaA TRUE 0.628 20 -13.455
 600663 600664 BH02050 BH02060 coaA ansA FALSE 0.21 116 -7.351
 600665 600666 BH02070 BH02080 hslV hslU TRUE 1 1 1460.287
 600667 600668 BH02090 BH02100 rsmC pnp TRUE 0.907 39 4.106
 600668 600669 BH02100 BH02110 pnp rpsO TRUE 0.983 264 1521.991
 600671 600672 BH02130 BH02140 truB rbfA TRUE 0.999 5 411.031
 600672 600673 BH02140 BH02150 rbfA infB TRUE 0.986 129 590.769
 600673 600674 BH02150 BH02160 infB TRUE 0.994 -3 70.42
 600674 600675 BH02160 BH02170 nusA TRUE 0.986 27 74.45
 600675 600676 BH02170 BH02180 nusA TRUE 0.97 50 89.601
 600676 600677 BH02180 BH02190 FALSE 0.101 129 3.949
 600677 600678 BH02190 BH02200 metK TRUE 0.991 -3 36.653
 600678 600679 BH02200 BH02210 metK TRUE 0.736 121 12.521
 600679 600680 BH02210 BH02220 lnt TRUE 0.888 149 40.628
 600680 600681 BH02220 BH02230 lnt tlyC TRUE 0.993 -37 761.359
 600681 600682 BH02230 BH02240 tlyC TRUE 0.971 103 264.56
 600682 600683 BH02240 BH02250 phoH TRUE 0.997 21 419.646
 600683 600684 BH02250 BH02260 phoH TRUE 0.982 164 803.223
 600684 600685 BH02260 BH02270 TRUE 0.638 32 -6.902
 600685 600686 BH02270 BH02280 TRUE 0.998 0 113.973
 600686 600687 BH02280 BH02290 FALSE 0.008 584 -10.755
 600687 600688 BH02290 BH02300 recR FALSE 0.218 75 -17.374
 600688 600689 BH02300 BH02310 recR TRUE 0.998 35 1461.381
 600689 600690 BH02310 BH02320 dnaX TRUE 0.992 15 72.561
 600690 600691 BH02320 BH02330 dnaX FALSE 0.001 1274 -6.139
 600693 600694 BH02350 BH02360 pheA kdsB TRUE 0.992 -3 29.562
 600695 600696 BH02370 BH02380 FALSE 0.151 139 -6.873
 600696 600697 BH02380 BH02390 TRUE 0.999 0 642.341
 600697 600698 BH02390 BH02400 TRUE 0.999 -3 583.709
 600700 600701 BH02420 BH02430 gshB FALSE 0.114 150 -14.216
 600701 600702 BH02430 BH02440 TRUE 0.979 66 87.464
 600702 600703 BH02440 BH02450 pstA TRUE 0.999 -3 96.152
 600703 600704 BH02450 BH02460 pstA pstB TRUE 0.994 59 160.904
 600704 600705 BH02460 BH02470 pstB phoU TRUE 0.999 22 1336.745
 600705 600706 BH02470 BH02480 phoU FALSE 0.306 112 0
 600706 600707 BH02480 BH02490 FALSE 0.018 567 0
 600707 600708 BH02490 BH02500 TRUE 0.858 32 0.036
 600708 600709 BH02500 BH02510 mutM TRUE 0.538 59 -11.868
 600709 600710 BH02510 BH02520 mutM FALSE 0.228 84 -16.114
 600710 600711 BH02520 BH02530 rnd1 TRUE 0.831 1 -3.364
 600711 600712 BH02530 BH02540 rnd1 FALSE 0.001 593 0.002
 600712 600713 BH02540 BH02550 hpbC FALSE 0.001 1057 -6.139
 600713 600714 BH02550 BH02560 hpbC hbpA FALSE 0.235 334 -0.419
 600714 600715 BH02560 BH02570 hbpA hbpB FALSE 0.046 498 0.002