VIMSS Operon Predictions for Anaeromyxobacter dehalogenans 2CP-C

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 1296736 1296737 Adeh_0001 Adeh_0002 TRUE 0.899 416 1187.706
 1296737 1296738 Adeh_0002 Adeh_0003 TRUE 0.997 20 1111.668
 1296738 1296739 Adeh_0003 Adeh_0004 TRUE 0.952 188 646.194
 1296739 1296740 Adeh_0004 Adeh_0005 FALSE 0.159 82 -0.166
 1296740 1296741 Adeh_0005 Adeh_R0001 tRNA-Gln1 FALSE 0.046 92 0
 1296741 1296742 Adeh_R0001 Adeh_0006 tRNA-Gln1 FALSE 0.111 45 0
 1296742 1296743 Adeh_0006 Adeh_0007 FALSE 0.217 24 -0.292
 1296744 1296745 Adeh_0008 Adeh_0009 FALSE 0.207 118 0.308
 1296745 1296746 Adeh_0009 Adeh_0010 FALSE 0.101 260 0.308
 1296746 1296747 Adeh_0010 Adeh_0011 FALSE 0.45 121 0.872
 1296748 1296749 Adeh_0012 Adeh_0013 TRUE 0.997 0 142.338
 1296749 1296750 Adeh_0013 Adeh_0014 TRUE 0.984 13 3.891
 1296750 1296751 Adeh_0014 Adeh_0015 FALSE 0.42 33 -0.101
 1296751 1296752 Adeh_0015 Adeh_0016 FALSE 0.108 237 0.308
 1296752 1296753 Adeh_0016 Adeh_R0002 tRNA-Phe1 FALSE 0.029 157 0
 1296756 1296757 Adeh_0019 Adeh_0020 FALSE 0.378 15 0
 1296760 1296761 Adeh_0023 Adeh_0024 FALSE 0.07 58 -0.095
 1296765 1296766 Adeh_0028 Adeh_0029 FALSE 0.031 172 0
 1296769 1296770 Adeh_0032 Adeh_0033 TRUE 0.945 14 3.042
 1296771 1296772 Adeh_0034 Adeh_0035 FALSE 0.103 190 0.267
 1296773 1296774 Adeh_0036 Adeh_0037 TRUE 0.987 4 5.058
 1296774 1296775 Adeh_0037 Adeh_0038 TRUE 0.99 20 119.601
 1296775 1296776 Adeh_0038 Adeh_0039 TRUE 0.991 13 49.523
 1296776 1296777 Adeh_0039 Adeh_0040 TRUE 0.994 -7 113.063
 1296778 1296779 Adeh_0041 Adeh_0042 TRUE 0.993 -3 70.439
 1296782 1296783 Adeh_0045 Adeh_0046 FALSE 0.104 43 -0.452
 1296783 1296784 Adeh_0046 Adeh_0047 TRUE 0.87 76 94.308
 1296785 1296786 Adeh_0048 Adeh_0049 TRUE 0.992 46 1214.474
 1296786 1296787 Adeh_0049 Adeh_0050 TRUE 0.836 26 -3.656
 1296787 1296788 Adeh_0050 Adeh_0051 TRUE 0.735 55 2.261
 1296788 1296789 Adeh_0051 Adeh_0052 TRUE 0.675 17 -2.619
 1296789 1296790 Adeh_0052 Adeh_0053 FALSE 0.049 68 -3.066
 1296792 1296793 Adeh_0055 Adeh_0056 TRUE 0.714 35 -1.225
 1296793 1296794 Adeh_0056 Adeh_0057 TRUE 0.839 37 0.412
 1296794 1296795 Adeh_0057 Adeh_0058 FALSE 0.153 165 -0.535
 1296797 1296798 Adeh_0060 Adeh_0061 TRUE 0.998 7 514.992
 1296798 1296799 Adeh_0061 Adeh_0062 FALSE 0.011 295 -2.559
 1296799 1296800 Adeh_0062 Adeh_0063 TRUE 0.583 74 3.042
 1296800 1296801 Adeh_0063 Adeh_0064 TRUE 0.969 7 3.042
 1296803 1296804 Adeh_0066 Adeh_0067 FALSE 0.051 61 -0.03
 1296804 1296805 Adeh_0067 Adeh_0068 FALSE 0.038 83 -0.102
 1296805 1296806 Adeh_0068 Adeh_0069 FALSE 0.469 34 -4.907
 1296806 1296807 Adeh_0069 Adeh_0070 TRUE 0.999 0 343.374
 1296807 1296808 Adeh_0070 Adeh_0071 TRUE 0.702 53 3.042
 1296809 1296810 Adeh_0072 Adeh_0073 TRUE 0.659 20 0.118
 1296810 1296811 Adeh_0073 Adeh_0074 TRUE 0.722 -31 0.308
 1296812 1296813 Adeh_0075 Adeh_0076 TRUE 0.969 -3 1.095
 1296813 1296814 Adeh_0076 Adeh_0077 TRUE 0.798 -3 0.149
 1296814 1296815 Adeh_0077 Adeh_0078 FALSE 0.013 452 0
 1296817 1296818 Adeh_0080 Adeh_0081 FALSE 0.046 89 0
 1296819 1296820 Adeh_0082 Adeh_0083 TRUE 0.994 -3 526.215
 1296825 1296826 Adeh_0088 Adeh_0089 TRUE 0.905 17 -1.914
 1296826 1296827 Adeh_0089 Adeh_0090 FALSE 0.054 96 0
 1296827 1296828 Adeh_0090 Adeh_0091 FALSE 0.453 10 -0.292
 1296828 1296829 Adeh_0091 Adeh_0092 FALSE 0.013 250 -0.04
 1296830 1296831 Adeh_0093 Adeh_0094 TRUE 0.938 45 26.416
 1296831 1296832 Adeh_0094 Adeh_0095 TRUE 0.584 44 -3.026
 1296833 1296834 Adeh_0096 Adeh_0097 FALSE 0.028 159 0
 1296834 1296835 Adeh_0097 Adeh_0098 FALSE 0.412 97 -8.368
 1296835 1296836 Adeh_0098 Adeh_0099 FALSE 0.5 -3 -1.584
 1296836 1296837 Adeh_0099 Adeh_0100 FALSE 0.267 148 -2.569
 1296839 1296840 Adeh_0102 Adeh_0103 TRUE 0.989 -3 51.701
 1296840 1296841 Adeh_0103 Adeh_0104 FALSE 0.028 68 -1.346
 1296842 1296843 Adeh_0105 Adeh_0106 FALSE 0.057 87 0
 1296843 1296844 Adeh_0106 Adeh_0107 TRUE 0.887 3 0
 1296844 1296845 Adeh_0107 Adeh_0108 FALSE 0.486 -3 0
 1296845 1296846 Adeh_0108 Adeh_0109 FALSE 0.166 118 0.276
 1296846 1296847 Adeh_0109 Adeh_0110 FALSE 0.018 235 0
 1296847 1296848 Adeh_0110 Adeh_0111 FALSE 0.021 202 0
 1296848 1296849 Adeh_0111 Adeh_0112 FALSE 0.055 71 -0.324
 1296849 1296850 Adeh_0112 Adeh_0113 FALSE 0.354 132 -0.091
 1296850 1296851 Adeh_0113 Adeh_0114 TRUE 0.6 51 -2.109
 1296853 1296854 Adeh_0116 Adeh_0117 TRUE 0.987 13 5.932
 1296854 1296855 Adeh_0117 Adeh_0118 TRUE 0.988 4 3.042
 1296855 1296856 Adeh_0118 Adeh_0119 TRUE 0.892 106 10.657
 1296856 1296857 Adeh_0119 Adeh_0120 TRUE 0.999 10 770.862
 1296857 1296858 Adeh_0120 Adeh_0121 TRUE 0.873 274 542.073
 1296858 1296859 Adeh_0121 Adeh_0122 TRUE 0.564 150 -3.835
 1296859 1296860 Adeh_0122 Adeh_0123 TRUE 0.919 -60 -0.657
 1296861 1296862 Adeh_0124 Adeh_0125 FALSE 0.027 165 0
 1296862 1296863 Adeh_0125 Adeh_0126 FALSE 0.474 11 0
 1296863 1296864 Adeh_0126 Adeh_0127 TRUE 0.963 -7 0.685
 1296864 1296865 Adeh_0127 Adeh_0128 TRUE 0.667 19 0.016
 1296865 1296866 Adeh_0128 Adeh_0129 FALSE 0.265 72 0.308
 1296866 1296867 Adeh_0129 Adeh_0130 TRUE 0.813 14 0.308
 1296867 1296868 Adeh_0130 Adeh_0131 FALSE 0.134 188 0.308
 1296868 1296869 Adeh_0131 Adeh_0132 FALSE 0.357 49 0.221
 1296869 1296870 Adeh_0132 Adeh_0133 FALSE 0.113 134 -0.14
 1296870 1296871 Adeh_0133 Adeh_0134 TRUE 0.822 9 -3.026
 1296871 1296872 Adeh_0134 Adeh_0135 TRUE 0.969 29 26.666
 1296872 1296873 Adeh_0135 Adeh_0136 FALSE 0.088 51 0
 1296874 1296875 Adeh_0137 Adeh_0138 FALSE 0.161 166 0.308
 1296875 1296876 Adeh_0138 Adeh_0139 FALSE 0.283 59 0.271
 1296876 1296877 Adeh_0139 Adeh_0140 FALSE 0.223 71 0.083
 1296878 1296879 Adeh_0141 Adeh_0142 FALSE 0.035 46 -0.02
 1296879 1296880 Adeh_0142 Adeh_0143 TRUE 0.955 -64 13.54
 1296881 1296882 Adeh_0144 Adeh_0145 TRUE 0.79 -3 0.016
 1296883 1296884 Adeh_0146 Adeh_0147 TRUE 0.992 -3 229.014
 1296884 1296885 Adeh_0147 Adeh_0148 TRUE 0.903 111 141.943
 1296885 1296886 Adeh_0148 Adeh_0149 TRUE 0.975 44 29.942
 1296886 1296887 Adeh_0149 Adeh_0150 TRUE 0.988 17 30.177
 1296887 1296888 Adeh_0150 Adeh_0151 TRUE 0.98 -3 3.694
 1296888 1296889 Adeh_0151 Adeh_0152 TRUE 0.995 3 8.235
 1296889 1296890 Adeh_0152 Adeh_0153 TRUE 0.999 -3 626.679
 1296890 1296891 Adeh_0153 Adeh_0154 FALSE 0.397 158 -9.327
 1296891 1296892 Adeh_0154 Adeh_0155 TRUE 0.859 138 80.445
 1296892 1296893 Adeh_0155 Adeh_0156 TRUE 0.953 50 36.889
 1296893 1296894 Adeh_0156 Adeh_0157 TRUE 0.803 14 -9.987
 1296894 1296895 Adeh_0157 Adeh_0158 TRUE 0.96 -3 0.655
 1296895 1296896 Adeh_0158 Adeh_0159 TRUE 0.726 -3 -1.071
 1296896 1296897 Adeh_0159 Adeh_0160 TRUE 0.802 170 190.296
 1296897 1296898 Adeh_0160 Adeh_0161 TRUE 0.967 4 -3.709
 1296898 1296899 Adeh_0161 Adeh_0162 FALSE 0.052 548 -3.497
 1296899 1296900 Adeh_0162 Adeh_0163 FALSE 0.389 121 1.602
 1296900 1296901 Adeh_0163 Adeh_0164 FALSE 0.143 178 0.308
 1296901 1296902 Adeh_0164 Adeh_0165 TRUE 0.996 0 182.971
 1296904 1296905 Adeh_0167 Adeh_0168 TRUE 0.834 -3 0.308
 1296905 1296906 Adeh_0168 Adeh_0169 FALSE 0.055 68 0
 1296908 1296909 Adeh_0171 Adeh_0172 TRUE 0.994 -3 7.679
 1296910 1296911 Adeh_0173 Adeh_0174 FALSE 0.049 83 0
 1296911 1296912 Adeh_0174 Adeh_0175 FALSE 0.475 13 0
 1296912 1296913 Adeh_0175 Adeh_0176 FALSE 0.026 172 0
 1296913 1296914 Adeh_0176 Adeh_0177 FALSE 0.018 241 0
 1296914 1296915 Adeh_0177 Adeh_0178 FALSE 0.284 46 -0.222
 1296916 1296917 Adeh_0179 Adeh_0180 FALSE 0.412 18 -12.109
 1296917 1296918 Adeh_0180 Adeh_0181 FALSE 0.189 832 -7.245
 1296918 1296919 Adeh_0181 Adeh_0182 FALSE 0.031 73 -0.039
 1296919 1296920 Adeh_0182 Adeh_0183 TRUE 0.944 29 1.752
 1296920 1296921 Adeh_0183 Adeh_0184 TRUE 0.997 -3 188.889
 1296921 1296922 Adeh_0184 Adeh_0185 TRUE 0.994 -3 13.842
 1296922 1296923 Adeh_0185 Adeh_0186 TRUE 0.996 -3 71.995
 1296923 1296924 Adeh_0186 Adeh_0187 TRUE 0.994 -19 155.448
 1296924 1296925 Adeh_0187 Adeh_0188 TRUE 0.998 -3 863.901
 1296925 1296926 Adeh_0188 Adeh_0189 TRUE 0.993 -3 60.633
 1296926 1296927 Adeh_0189 Adeh_0190 TRUE 0.75 11 -0.436
 1296928 1296929 Adeh_0191 Adeh_0192 FALSE 0.036 126 0
 1296930 1296931 Adeh_0193 Adeh_0194 FALSE 0.094 49 0
 1296932 1296933 Adeh_0195 Adeh_0196 TRUE 0.637 23 0.245
 1296937 1296938 Adeh_0200 Adeh_0201 FALSE 0.03 67 -1.618
 1296938 1296939 Adeh_0201 Adeh_0202 FALSE 0.038 58 -1.618
 1296939 1296940 Adeh_0202 Adeh_0203 TRUE 0.589 26 0.016
 1296940 1296941 Adeh_0203 Adeh_0204 FALSE 0.037 124 0
 1296942 1296943 Adeh_0205 Adeh_0206 FALSE 0.023 191 0
 1296943 1296944 Adeh_0206 Adeh_0207 TRUE 0.906 4 0.308
 1296944 1296945 Adeh_0207 Adeh_0208 TRUE 0.837 8 0
 1296947 1296948 Adeh_0210 Adeh_0211 FALSE 0.052 75 0
 1296948 1296949 Adeh_0211 Adeh_0212 TRUE 0.999 3 789.094
 1296949 1296950 Adeh_0212 Adeh_0213 TRUE 0.695 290 121.157
 1296951 1296952 Adeh_0214 Adeh_0215 FALSE 0.037 124 0
 1296952 1296953 Adeh_0215 Adeh_0216 FALSE 0.042 106 0
 1296953 1296954 Adeh_0216 Adeh_0217 FALSE 0.029 69 -1.618
 1296955 1296956 Adeh_0218 Adeh_0219 FALSE 0.049 169 -0.234
 1296958 1296959 Adeh_0221 Adeh_0222 FALSE 0.189 98 -0.121
 1296959 1296960 Adeh_0222 Adeh_0223 FALSE 0.038 120 0
 1296962 1296963 Adeh_0225 Adeh_0226 TRUE 0.988 19 113.709
 1296967 1296968 Adeh_0230 Adeh_0231 TRUE 0.976 -3 8.991
 1296968 1296969 Adeh_0231 Adeh_0232 FALSE 0.015 143 -1.326
 1296969 1296970 Adeh_0232 Adeh_0233 TRUE 0.723 -3 -0.666
 1296970 1296971 Adeh_0233 Adeh_0234 FALSE 0.033 113 -0.355
 1296971 1296972 Adeh_0234 Adeh_0235 FALSE 0.04 125 -0.299
 1296972 1296973 Adeh_0235 Adeh_0236 TRUE 0.742 73 1.689
 1296973 1296974 Adeh_0236 Adeh_0237 TRUE 0.534 63 1.671
 1296974 1296975 Adeh_0237 Adeh_0238 TRUE 0.816 -3 -0.279
 1296976 1296977 Adeh_0239 Adeh_0240 TRUE 0.507 10 0
 1296977 1296978 Adeh_0240 Adeh_0241 FALSE 0.155 34 -0.16
 1296978 1296979 Adeh_0241 Adeh_0242 FALSE 0.106 46 0
 1296981 1296982 Adeh_0244 Adeh_0245 FALSE 0.283 -54 0
 1296983 1296984 Adeh_0246 Adeh_0247 TRUE 0.991 -3 75.597
 1296984 1296985 Adeh_0247 Adeh_0248 TRUE 0.523 61 1.1
 1296985 1296986 Adeh_0248 Adeh_0249 TRUE 0.79 33 1.671
 1296986 1296987 Adeh_0249 Adeh_0250 FALSE 0.103 144 -0.279
 1296988 1296989 Adeh_0251 Adeh_0252 FALSE 0.134 188 0.308
 1296989 1296990 Adeh_0252 Adeh_0253 FALSE 0.102 152 -1.177
 1296991 1296992 Adeh_0254 Adeh_0255 FALSE 0.139 184 0.308
 1296994 1296995 Adeh_0257 Adeh_0258 TRUE 0.992 -3 26.143
 1296995 1296996 Adeh_0258 Adeh_0259 TRUE 0.521 73 0.14
 1296996 1296997 Adeh_0259 Adeh_0260 TRUE 0.895 7 0.308
 1296997 1296998 Adeh_0260 Adeh_0261 TRUE 0.836 13 0.308
 1297003 1297004 Adeh_0266 Adeh_0267 TRUE 0.994 3 19.285
 1297004 1297005 Adeh_0267 Adeh_0268 TRUE 0.947 36 6.508
 1297005 1297006 Adeh_0268 Adeh_0269 FALSE 0.375 53 0.308
 1297007 1297008 Adeh_0270 Adeh_0271 FALSE 0.264 23 0
 1297009 1297010 Adeh_0272 Adeh_0273 TRUE 0.926 104 195.245
 1297010 1297011 Adeh_0273 Adeh_0274 FALSE 0.035 402 0.308
 1297012 1297013 Adeh_0275 Adeh_0276 FALSE 0.293 64 0.308