VIMSS Operon Predictions for Arthrobacter sp. FB24

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 1814607 1814608 Arth_0001 Arth_0002 FALSE 0.224 536 615.695
 1814608 1814609 Arth_0002 Arth_0003 TRUE 0.703 51 4.986
 1814609 1814610 Arth_0003 Arth_0004 TRUE 0.764 37 8.311
 1814610 1814611 Arth_0004 Arth_0005 TRUE 0.987 -3 36.96
 1814611 1814612 Arth_0005 Arth_0006 FALSE 0.09 414 30.827
 1814612 1814613 Arth_0006 Arth_0007 TRUE 0.978 67 317.686
 1814613 1814614 Arth_0007 Arth_0008 TRUE 0.991 -3 11.346
 1814614 1390155 Arth_0008 Arth_R0001 FALSE 0.122 99 0
 1390155 1390156 Arth_R0001 Arth_R0002 FALSE 0.024 248 0
 1390156 1814615 Arth_R0002 Arth_0009 FALSE 0.095 131 0
 1814616 1814617 Arth_0010 Arth_0011 FALSE 0.14 180 0.253
 1814618 1814619 Arth_0012 Arth_0013 TRUE 0.904 7 6.665
 1814623 1814624 Arth_0017 Arth_0018 TRUE 0.932 5 7.389
 1814624 1814625 Arth_0018 Arth_0019 TRUE 0.973 -3 3.402
 1814626 1814627 Arth_0020 Arth_0021 TRUE 0.866 57 9.928
 1814627 1814628 Arth_0021 Arth_0022 TRUE 0.987 -3 8.982
 1814628 1814629 Arth_0022 Arth_0023 TRUE 0.998 -3 85.456
 1814629 1814630 Arth_0023 Arth_0024 TRUE 0.993 -3 26.389
 1814630 1814631 Arth_0024 Arth_0025 TRUE 0.984 3 28.054
 1814631 1814632 Arth_0025 Arth_0026 TRUE 0.996 -3 42.215
 1390175 1814633 Arth_R0003 Arth_0027 FALSE 0.03 225 0
 1814633 1814634 Arth_0027 Arth_0028 TRUE 0.97 15 23.928
 1814634 1814635 Arth_0028 Arth_0029 TRUE 0.995 -3 3.898
 1814635 1814636 Arth_0029 Arth_0030 TRUE 0.99 -3 3.996
 1814637 1814638 Arth_0031 Arth_0032 TRUE 0.83 11 1.204
 1814640 1814641 Arth_0034 Arth_0035 FALSE 0.125 107 0
 1814641 1814642 Arth_0035 Arth_0036 TRUE 0.868 -3 0
 1814642 1814643 Arth_0036 Arth_0037 TRUE 0.933 27 23.051
 1814643 1814644 Arth_0037 Arth_0038 TRUE 0.687 155 19.786
 1814644 1814645 Arth_0038 Arth_0039 TRUE 0.617 3 -0.89
 1814646 1814647 Arth_0040 Arth_0041 TRUE 0.554 34 0.181
 1814647 1814648 Arth_0041 Arth_0042 TRUE 0.954 -3 0.253
 1814648 1814649 Arth_0042 Arth_0043 FALSE 0.048 113 -1.497
 1814650 1814651 Arth_0044 Arth_0045 FALSE 0.109 117 0
 1814652 1814653 Arth_0046 Arth_0047 FALSE 0.07 72 -0.67
 1814653 1814654 Arth_0047 Arth_0048 FALSE 0.096 140 0
 1814654 1814655 Arth_0048 Arth_0049 TRUE 0.882 84 8.665
 1814655 1814656 Arth_0049 Arth_0050 TRUE 0.902 93 40.818
 1814656 1814657 Arth_0050 Arth_0051 TRUE 0.822 28 0.192
 1814657 1814658 Arth_0051 Arth_0052 TRUE 0.633 17 0.253
 1814658 1814659 Arth_0052 Arth_0053 FALSE 0.482 47 0.253
 1814659 1814660 Arth_0053 Arth_0054 TRUE 0.974 -7 0.185
 1814660 1814661 Arth_0054 Arth_0055 FALSE 0.129 102 0
 1814667 1814668 Arth_0061 Arth_0062 FALSE 0.164 90 0
 1814668 1814669 Arth_0062 Arth_0063 FALSE 0.347 28 0
 1814669 1814670 Arth_0063 Arth_0064 FALSE 0.435 12 0
 1814670 1814671 Arth_0064 Arth_0065 FALSE 0.163 78 0
 1814671 1814672 Arth_0065 Arth_0066 FALSE 0.096 40 -1.427
 1814672 1814673 Arth_0066 Arth_0067 FALSE 0.074 87 -3.25
 1814676 1814677 Arth_0070 Arth_0071 FALSE 0.088 137 0
 1814678 1390222 Arth_0072 Arth_R0004 FALSE 0.413 13 0
 1814679 1814680 Arth_0073 Arth_0074 TRUE 0.912 3 0.75
 1814680 1814681 Arth_0074 Arth_0075 FALSE 0.178 68 0
 1814682 1814683 Arth_0076 Arth_0077 FALSE 0.185 78 -2.857
 1814683 1814684 Arth_0077 Arth_0078 FALSE 0.2 57 0
 1814684 1814685 Arth_0078 Arth_0079 FALSE 0.069 158 0
 1814687 1814688 Arth_0081 Arth_0082 TRUE 0.956 1 3.389
 1814688 1814689 Arth_0082 Arth_0083 TRUE 0.991 -3 1.736
 1814690 1814691 Arth_0084 Arth_0085 TRUE 0.989 -15 33.809
 1814691 1814692 Arth_0085 Arth_0086 FALSE 0.086 50 -0.982
 1814692 1814693 Arth_0086 Arth_0087 TRUE 0.896 28 7.465
 1814693 1814694 Arth_0087 Arth_0088 FALSE 0.161 29 -0.711
 1814694 1814695 Arth_0088 Arth_0089 TRUE 0.915 93 21.842
 1814695 1814696 Arth_0089 Arth_0090 TRUE 0.998 -3 25.428
 1814699 1814700 Arth_0093 Arth_0094 FALSE 0.042 106 -1.399
 1814700 1814701 Arth_0094 Arth_0095 FALSE 0.461 53 0.253
 1814701 1814702 Arth_0095 Arth_0096 TRUE 0.968 9 35.424
 1814703 1814704 Arth_0097 Arth_0098 FALSE 0.163 78 0
 1814705 1814706 Arth_0099 Arth_0100 TRUE 0.611 6 0
 1814706 1814707 Arth_0100 Arth_0101 FALSE 0.418 14 0
 1814708 1814709 Arth_0102 Arth_0103 FALSE 0.11 116 0
 1814709 1814710 Arth_0103 Arth_0104 FALSE 0.113 110 0
 1814710 1814711 Arth_0104 Arth_0105 FALSE 0.388 7 -0.593
 1814712 1814713 Arth_0106 Arth_0107 FALSE 0.061 109 -3.585
 1814713 1814714 Arth_0107 Arth_0108 FALSE 0.061 89 -4.215
 1814714 1814715 Arth_0108 Arth_0109 FALSE 0.128 34 -3.972
 1814715 1814716 Arth_0109 Arth_0110 TRUE 0.603 -22 -7.199
 1814716 1814717 Arth_0110 Arth_0111 FALSE 0.142 37 -15.043
 1814717 1814718 Arth_0111 Arth_0112 FALSE 0.258 14 -11.383
 1814719 1814720 Arth_0113 Arth_0114 TRUE 0.805 -10 0
 1814720 1814721 Arth_0114 Arth_0115 FALSE 0.115 107 0
 1814721 1814722 Arth_0115 Arth_0116 FALSE 0.006 368 0.253
 1814723 1814724 Arth_0117 Arth_0118 FALSE 0.441 54 0.253
 1814725 1814726 Arth_0119 Arth_0120 TRUE 0.994 -16 14.967
 1814727 1814728 Arth_0121 Arth_0122 FALSE 0.264 35 0
 1814728 1814729 Arth_0122 Arth_0123 FALSE 0.064 85 -1.601
 1814730 1814731 Arth_0124 Arth_0125 FALSE 0.078 58 -0.752
 1814732 1814733 Arth_0126 Arth_0127 FALSE 0.081 50 -1.497
 1814735 1814736 Arth_0129 Arth_0130 FALSE 0.078 237 0.253
 1814738 1814739 Arth_0132 Arth_0133 FALSE 0.125 97 0
 1814740 1814741 Arth_0134 Arth_0135 FALSE 0.109 72 -4.68
 1814741 1814742 Arth_0135 Arth_0136 TRUE 0.706 -7 -1.226
 1814743 1814744 Arth_0137 Arth_0138 FALSE 0.091 83 -7.704
 1814746 1814747 Arth_0140 Arth_0141 TRUE 0.6 133 -12.068
 1814750 1814751 Arth_0144 Arth_0145 FALSE 0.413 13 0
 1814751 1814752 Arth_0145 Arth_0146 FALSE 0.032 164 -0.555
 1814753 1814754 Arth_0147 Arth_0148 TRUE 0.614 109 34.115
 1814754 1814755 Arth_0148 Arth_0149 TRUE 0.976 1 31.632
 1814755 1814756 Arth_0149 Arth_0150 TRUE 0.938 30 36.476
 1814756 1814757 Arth_0150 Arth_0151 TRUE 0.629 205 187.467
 1814757 1814758 Arth_0151 Arth_0152 TRUE 0.973 10 37.926
 1814758 1814759 Arth_0152 Arth_0153 TRUE 0.99 11 106.091
 1814759 1814760 Arth_0153 Arth_0154 TRUE 0.993 10 288.204
 1814760 1814761 Arth_0154 Arth_0155 TRUE 0.999 -3 191.008
 1814761 1814762 Arth_0155 Arth_0156 TRUE 0.955 4 22.411
 1814762 1814763 Arth_0156 Arth_0157 FALSE 0.104 41 -2.578
 1814763 1814764 Arth_0157 Arth_0158 TRUE 0.956 15 32.821
 1814764 1814765 Arth_0158 Arth_0159 TRUE 0.626 -7 -2.766
 1814765 1814766 Arth_0159 Arth_0160 TRUE 0.971 17 52.83
 1814766 1814767 Arth_0160 Arth_0161 FALSE 0.055 103 -4.913
 1814768 1814769 Arth_0162 Arth_0163 FALSE 0.42 62 0.253
 1814769 1814770 Arth_0163 Arth_0164 TRUE 0.574 27 0.253
 1814771 1814772 Arth_0165 Arth_0166 TRUE 0.887 3 0.253
 1814772 1814773 Arth_0166 Arth_0167 FALSE 0.229 137 0.253
 1814773 1814774 Arth_0167 Arth_0168 FALSE 0.081 370 17.144
 1814774 1814775 Arth_0168 Arth_0169 FALSE 0.019 220 -4.173
 1814775 1814776 Arth_0169 Arth_0170 TRUE 0.592 27 -2.179
 1814778 1814779 Arth_0172 Arth_0173 TRUE 0.997 3 364.285
 1814779 1814780 Arth_0173 Arth_0174 TRUE 0.992 -3 6.438
 1814781 1814782 Arth_0175 Arth_0176 FALSE 0.177 69 0
 1814782 1814783 Arth_0176 Arth_0177 FALSE 0.18 67 0
 1814784 1814785 Arth_0178 Arth_0179 FALSE 0.021 168 -1.175
 1814785 1814786 Arth_0179 Arth_0180 FALSE 0.109 78 -0.247
 1814787 1814788 Arth_0181 Arth_0182 TRUE 0.584 28 -9.506
 1814788 1814789 Arth_0182 Arth_0183 TRUE 0.886 75 5.983
 1814789 1814790 Arth_0183 Arth_0184 FALSE 0.448 69 -0.008
 1814790 1814791 Arth_0184 Arth_0185 TRUE 0.785 38 1.076
 1814791 1814792 Arth_0185 Arth_0186 TRUE 0.997 -3 16.098
 1814792 1814793 Arth_0186 Arth_0187 TRUE 0.993 4 18.954
 1814793 1814794 Arth_0187 Arth_0188 TRUE 0.961 34 25.81
 1814797 1814798 Arth_0191 Arth_0192 FALSE 0.191 79 0
 1814800 1814801 Arth_0194 Arth_0195 TRUE 0.974 14 75.767
 1814802 1814803 Arth_0196 Arth_0197 TRUE 0.771 17 -1.674
 1814803 1814804 Arth_0197 Arth_0198 TRUE 0.617 87 6.89
 1814804 1814805 Arth_0198 Arth_0199 FALSE 0.105 120 0
 1814805 1814806 Arth_0199 Arth_0200 FALSE 0.112 112 0
 1814806 1814807 Arth_0200 Arth_0201 FALSE 0.079 86 -5.669
 1814808 1814809 Arth_0202 Arth_0203 TRUE 0.91 195 358.29
 1814809 1814810 Arth_0203 Arth_0204 TRUE 0.999 1 837.605
 1814810 1814811 Arth_0204 Arth_0205 TRUE 0.984 47 815.211
 1814812 1814813 Arth_0206 Arth_0207 TRUE 0.99 2 4.95
 1814813 1814814 Arth_0207 Arth_0208 FALSE 0.065 289 2.03
 1390359 1814815 Arth_R0005 Arth_0209 FALSE 0.37 16 0
 1814816 1814817 Arth_0210 Arth_0211 FALSE 0.171 73 0
 1814818 1814819 Arth_0212 Arth_0213 TRUE 0.959 27 149.609
 1814819 1814820 Arth_0213 Arth_0214 FALSE 0.209 26 -4.143
 1814820 1814821 Arth_0214 Arth_0215 TRUE 0.713 94 -0.359
 1814821 1814822 Arth_0215 Arth_0216 FALSE 0.135 46 -0.766
 1814822 1814823 Arth_0216 Arth_0217 TRUE 0.914 3 -0.123
 1814825 1814826 Arth_0219 Arth_0220 FALSE 0.024 160 -1.801
 1814826 1814827 Arth_0220 Arth_0221 FALSE 0.375 116 1.582
 1814827 1814828 Arth_0221 Arth_0222 FALSE 0.051 117 -2.648
 1814828 1814829 Arth_0222 Arth_0223 TRUE 0.996 -3 51.768
 1814829 1814830 Arth_0223 Arth_0224 TRUE 0.967 35 60.818
 1814834 1814835 Arth_0228 Arth_0229 FALSE 0.05 136 -2.197
 1814835 1814836 Arth_0229 Arth_0230 TRUE 0.954 36 97.785
 1814836 1814837 Arth_0230 Arth_0231 TRUE 0.963 33 123.79
 1814838 1814839 Arth_0232 Arth_0233 TRUE 0.857 -3 0
 1814839 1814840 Arth_0233 Arth_0234 TRUE 0.881 -3 0
 1814840 1814841 Arth_0234 Arth_0235 FALSE 0.105 135 -0.111
 1814846 1814847 Arth_0240 Arth_0241 FALSE 0.11 115 0
 1814847 1814848 Arth_0241 Arth_0242 TRUE 0.996 9 538.836
 1814848 1814849 Arth_0242 Arth_0243 TRUE 0.999 -3 528.589
 1814849 1814850 Arth_0243 Arth_0244 TRUE 0.967 23 117.707
 1814850 1814851 Arth_0244 Arth_0245 TRUE 0.995 5 141.066
 1814851 1814852 Arth_0245 Arth_0246 TRUE 0.992 13 560.18
 1814852 1814853 Arth_0246 Arth_0247 TRUE 0.947 93 93.138
 1814853 1814854 Arth_0247 Arth_0248 TRUE 0.978 0 1.327
 1814854 1814855 Arth_0248 Arth_0249 FALSE 0.102 68 -6.489
 1814855 1814856 Arth_0249 Arth_0250 FALSE 0.121 39 -0.844
 1814858 1814859 Arth_0252 Arth_0253 TRUE 0.65 -10 -0.203
 1814859 1814860 Arth_0253 Arth_0254 FALSE 0.012 214 -1.497
 1814860 1814861 Arth_0254 Arth_0255 FALSE 0.003 522 -3.791
 1814864 1814865 Arth_0258 Arth_0259 TRUE 0.891 15 24.746
 1814865 1814866 Arth_0259 Arth_0260 FALSE 0.013 353 0
 1814866 1814867 Arth_0260 Arth_0261 FALSE 0.04 154 0.253
 1814867 1814868 Arth_0261 Arth_0262 FALSE 0.359 134 -0.674
 1814868 1814869 Arth_0262 Arth_0263 FALSE 0.286 109 0.014
 1814869 1814870 Arth_0263 Arth_0264 TRUE 0.952 -3 0.086
 1814870 1814871 Arth_0264 Arth_0265 FALSE 0.409 91 0.165
 1814872 1814873 Arth_0266 Arth_0267 TRUE 0.719 3 0
 1814874 1814875 Arth_0268 Arth_0269 FALSE 0.06 78 -1.497
 1814878 1814879 Arth_0272 Arth_0273 TRUE 0.857 32 8.033
 1814879 1814880 Arth_0273 Arth_0274 TRUE 0.76 93 -0.866
 1814880 1814881 Arth_0274 Arth_0275 TRUE 0.969 0 -0.093
 1814881