VIMSS Operon Predictions for Bacillus sp. NRRL B-14911

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 2831616 2831617 B14911_02544 B14911_02549 uvsE TRUE 0.679 25 21.535
 2831618 2831619 B14911_02554 B14911_02559 FALSE 0.01 80 0
 2831619 2831620 B14911_02559 B14911_02564 FALSE 0.009 191 0
 2831620 2831621 B14911_02564 B14911_02569 FALSE 0.017 -15 0
 2831621 2831622 B14911_02569 B14911_02574 TRUE 0.952 38 34.119
 2831622 2831623 B14911_02574 B14911_02579 TRUE 0.946 39 14.829
 2831623 2831624 B14911_02579 B14911_02584 TRUE 0.97 43 17.488
 2831624 2831625 B14911_02584 B14911_02589 FALSE 0.445 123 20.382
 2831625 2831626 B14911_02589 B14911_02594 TRUE 0.938 -3 2.465
 2831626 2831627 B14911_02594 B14911_02599 FALSE 0.008 119 0
 2831627 2831628 B14911_02599 B14911_02604 FALSE 0.005 350 0
 2831631 2831632 B14911_02619 B14911_02624 FALSE 0.008 215 0
 2831633 2831634 B14911_02629 B14911_02634 TRUE 0.845 301 33.736
 2831634 2831635 B14911_02634 B14911_02639 TRUE 0.897 111 -36.875
 2831635 2831636 B14911_02639 B14911_02644 FALSE 0.2 320 -19.153
 2831636 2831637 B14911_02644 B14911_02649 TRUE 0.639 38 24.878
 2831637 2831638 B14911_02649 B14911_02654 rho FALSE 0.03 15 0
 2831638 2831639 B14911_02654 B14911_02659 rho FALSE 0.009 147 0
 2831639 2831640 B14911_02659 B14911_02664 FALSE 0.012 65 0
 2831640 2831641 B14911_02664 B14911_02669 TRUE 0.885 157 -62.663
 2831641 2831642 B14911_02669 B14911_02674 TRUE 0.835 164 -32.294
 2831642 2831643 B14911_02674 B14911_02679 FALSE 0.07 125 0.56
 2831643 2831644 B14911_02679 B14911_02684 prfA FALSE 0.085 387 0.56
 2831644 2831645 B14911_02684 B14911_02689 prfA TRUE 0.991 -7 390.369
 2831645 2831646 B14911_02689 B14911_02694 FALSE 0.016 -16 0
 2831646 2831647 B14911_02694 B14911_02699 FALSE 0.004 510 0
 2831647 2831648 B14911_02699 B14911_02704 FALSE 0.022 178 -1.016
 2831648 2831649 B14911_02704 B14911_02709 FALSE 0.022 158 -1.016
 2831649 2831650 B14911_02709 B14911_02714 FALSE 0.404 177 28.913
 2831650 2831651 B14911_02714 B14911_02719 TRUE 0.827 260 30.828
 2831651 2831652 B14911_02719 B14911_02724 FALSE 0.017 -15 0
 2831652 2831653 B14911_02724 B14911_02729 FALSE 0.004 672 0
 2831653 2831654 B14911_02729 B14911_02734 TRUE 0.832 17 2.924
 2831654 2831655 B14911_02734 B14911_02739 FALSE 0.038 119 -2.588
 2831657 2831658 B14911_02749 B14911_02754 TRUE 0.929 21 23.239
 2831658 2831659 B14911_02754 B14911_02759 FALSE 0.004 521 0
 2831659 2831660 B14911_02759 B14911_02764 FALSE 0.014 -19 0
 2831660 2831661 B14911_02764 B14911_02769 glyA FALSE 0.046 133 -3.752
 2831661 2831662 B14911_02769 B14911_02774 glyA TRUE 0.861 164 -111.586
 2831662 2831663 B14911_02774 B14911_02779 TRUE 0.915 37 -46.64
 2831663 2831664 B14911_02779 B14911_02784 FALSE 0.005 387 0
 2831664 2831665 B14911_02784 B14911_02789 FALSE 0.024 55 -0.692
 2831665 2831666 B14911_02789 B14911_02794 FALSE 0.046 361 1.299
 2831666 2831667 B14911_02794 B14911_02799 TRUE 0.567 7 7.976
 2831667 2831668 B14911_02799 B14911_02804 TRUE 0.873 22 45.472
 2831668 2831669 B14911_02804 B14911_02809 TRUE 0.975 77 399.263
 2831669 2831670 B14911_02809 B14911_02814 TRUE 0.966 218 358.355
 2831670 2831671 B14911_02814 B14911_02819 TRUE 0.997 -3 396.702
 2831671 2831672 B14911_02819 B14911_02824 TRUE 0.995 25 512.711
 2831672 2831673 B14911_02824 B14911_02829 FALSE 0.014 54 0
 2831673 2831674 B14911_02829 B14911_02834 FALSE 0.013 -21 0
 2831674 2831675 B14911_02834 B14911_02839 TRUE 0.987 173 499.171
 2831675 2831676 B14911_02839 B14911_02844 atpC TRUE 0.995 23 521.534
 2831676 2831677 B14911_02844 B14911_02849 atpC TRUE 0.7 1221 -134.644
 2831677 2831678 B14911_02849 B14911_02854 TRUE 0.987 -30 211.36
 2831678 2831679 B14911_02854 B14911_02859 TRUE 0.953 5 11.086
 2831679 2831680 B14911_02859 B14911_02864 TRUE 0.952 4 11.086
 2831680 2831681 B14911_02864 B14911_02869 TRUE 0.994 0 -110.913
 2831681 2831682 B14911_02869 B14911_02874 TRUE 0.988 68 146.779
 2831682 2831683 B14911_02874 B14911_02879 TRUE 0.996 -3 127.284
 2831683 2831684 B14911_02879 B14911_02884 TRUE 0.997 -3 373.068
 2831686 2831687 B14911_02894 B14911_02899 TRUE 0.997 -3 365.868
 2831687 2831688 B14911_02899 B14911_02904 TRUE 0.997 7 331.316
 2831688 2831689 B14911_02904 B14911_02909 FALSE 0.24 205 22.03
 2831689 2831690 B14911_02909 B14911_02914 FALSE 0.009 89 0
 2831690 2831691 B14911_02914 B14911_02919 FALSE 0.012 64 0
 2831691 2831692 B14911_02919 B14911_02924 TRUE 0.871 34 38.396
 2831692 2831693 B14911_02924 B14911_02929 TRUE 0.837 328 36.575
 2831694 2831695 B14911_02934 B14911_02939 FALSE 0.021 -10 0
 2831696 2831697 B14911_02944 B14911_02949 FALSE 0.092 474 -3.045
 2831697 2831698 B14911_02949 B14911_02954 TRUE 0.596 13 -19.429
 2831698 2831699 B14911_02954 B14911_02959 FALSE 0.031 153 -1.576
 2831699 2831700 B14911_02959 B14911_02964 FALSE 0.16 89 1.212
 2831700 2831701 B14911_02964 B14911_02969 TRUE 0.898 41 17.665
 2831702 2831703 B14911_02974 B14911_02979 FALSE 0.042 4 0
 2831704 2831705 B14911_02984 B14911_02989 FALSE 0.006 302 0
 2831705 2831706 B14911_02989 B14911_02994 FALSE 0.008 209 0
 2831706 2831707 B14911_02994 B14911_02999 FALSE 0.023 24 0
 2831709 2831710 B14911_03009 B14911_03014 TRUE 0.865 50 8.665
 2831710 2831711 B14911_03014 B14911_03019 fabZ FALSE 0.386 16 1.366
 2831711 2831712 B14911_03019 B14911_03024 fabZ FALSE 0.175 98 2.871
 2831712 2831713 B14911_03024 B14911_03029 FALSE 0.007 232 0
 2831713 2831714 B14911_03029 B14911_03034 FALSE 0.012 66 0
 2831716 2831717 B14911_03044 B14911_03049 FALSE 0.037 -3 0
 2831717 2831718 B14911_03049 B14911_03054 FALSE 0.007 250 0
 2831721 2831722 B14911_03069 B14911_03074 TRUE 0.593 -7 30.627
 2831723 2831724 B14911_03079 B14911_03084 FALSE 0.005 349 0
 2831726 2831727 B14911_03094 B14911_03099 FALSE 0.117 187 0
 2831727 2831728 B14911_03099 B14911_03104 FALSE 0.063 491 0
 2831728 2831729 B14911_03104 B14911_03109 FALSE 0.006 311 0
 2831729 2831730 B14911_03109 B14911_03114 FALSE 0.008 -64 0
 2831730 2831731 B14911_03114 B14911_03119 FALSE 0.214 175 0
 2831731 2831732 B14911_03119 B14911_03124 FALSE 0.007 235 0
 2831732 2831733 B14911_03124 B14911_03129 FALSE 0.014 54 0
 2831733 2831734 B14911_03129 B14911_03134 FALSE 0.008 142 0
 2831734 2831735 B14911_03134 B14911_03139 FALSE 0.005 376 0
 2831735 2831736 B14911_03139 B14911_03144 FALSE 0.039 9 0
 2831740 2831741 B14911_03164 B14911_03169 FALSE 0.119 -40 0
 2831742 2831743 B14911_03174 B14911_03179 FALSE 0.228 65 -10.866
 2831743 2831744 B14911_03179 B14911_03184 FALSE 0.058 14 -1.568
 2831745 2831746 B14911_03189 B14911_03194 TRUE 0.769 23 -32.091
 2831746 2831747 B14911_03194 B14911_03199 TRUE 0.661 181 -1.955
 2831747 2831748 B14911_03199 B14911_03204 TRUE 0.904 -3 -2.936
 2831748 2831749 B14911_03204 B14911_03209 FALSE 0.005 559 -0.347
 2831749 2831750 B14911_03209 B14911_03214 FALSE 0.004 496 0
 2831750 2831751 B14911_03214 B14911_03219 FALSE 0.17 56 0
 2831753 2831754 B14911_03229 B14911_03234 TRUE 0.968 -10 67.618
 2831754 2831755 B14911_03234 B14911_03239 TRUE 0.914 99 51.25
 2831755 2831756 B14911_03239 B14911_03244 TRUE 0.833 398 -7.342
 2831756 2831757 B14911_03244 B14911_03249 TRUE 0.909 185 -26.783
 2831757 2831758 B14911_03249 B14911_03254 TRUE 0.981 0 -3.915
 2831758 2831759 B14911_03254 B14911_03259 TRUE 0.913 95 -3.355
 2831759 2831760 B14911_03259 B14911_03264 TRUE 0.697 183 -5.868
 2831760 2831761 B14911_03264 B14911_03269 TRUE 0.91 -3 -1.085
 2831761 2831762 B14911_03269 B14911_03274 TRUE 0.897 1 -0.404
 2831762 2831763 B14911_03274 B14911_03279 TRUE 0.797 -19 1.099
 2831763 2831764 B14911_03279 B14911_03284 TRUE 0.74 345 -19.592
 2831764 2831765 B14911_03284 B14911_03289 TRUE 0.897 60 -5.596
 2831765 2831766 B14911_03289 B14911_03294 TRUE 0.965 18 19.92
 2831766 2831767 B14911_03294 B14911_03299 TRUE 0.912 33 -5.64
 2831767 2831768 B14911_03299 B14911_03304 FALSE 0.129 149 -1.385
 2831768 2831769 B14911_03304 B14911_03309 FALSE 0.121 168 0
 2831769 2831770 B14911_03309 B14911_03314 FALSE 0.204 48 -0.692
 2831770 2831771 B14911_03314 B14911_03319 TRUE 0.649 1 0.693
 2831771 2831772 B14911_03319 B14911_03324 FALSE 0.065 442 0
 2831772 2831773 B14911_03324 B14911_03329 FALSE 0.004 546 0
 2831773 2831774 B14911_03329 B14911_03334 FALSE 0.044 2 0
 2831774 2831775 B14911_03334 B14911_03339 TRUE 0.905 -3 0.693
 2831776 2831777 B14911_03344 B14911_03349 FALSE 0.006 288 0
 2831777 2831778 B14911_03349 B14911_03354 FALSE 0.037 -3 0
 2831780 2831781 B14911_03364 B14911_03369 FALSE 0.01 -27 0
 2831783 2831784 B14911_03379 B14911_03384 FALSE 0.004 877 0
 2831786 2831787 B14911_03394 B14911_03399 FALSE 0.008 138 0
 2831789 2831790 B14911_03409 B14911_03414 FALSE 0.008 210 0
 2831790 2831791 B14911_03414 B14911_03419 FALSE 0.009 99 0
 2831791 2831792 B14911_03419 B14911_03424 FALSE 0.005 341 0
 2831793 2831794 B14911_03429 B14911_03434 FALSE 0.004 799 0
 2831794 2831795 B14911_03434 B14911_03439 FALSE 0.038 10 0
 2831795 2831796 B14911_03439 B14911_03444 FALSE 0.142 -25 0
 2831798 2831799 B14911_03454 B14911_03459 FALSE 0.039 8 0
 2831800 2831801 B14911_03464 B14911_03469 FALSE 0.011 77 0
 2831802 2831803 B14911_03474 B14911_03479 FALSE 0.044 0 0
 2831803 2831804 B14911_03479 B14911_03484 FALSE 0.008 125 0
 2831804 2831805 B14911_03484 B14911_03489 FALSE 0.043 3 0
 2831805 2831806 B14911_03489 B14911_03494 FALSE 0.004 495 0
 2831806 2831807 B14911_03494 B14911_03499 FALSE 0.008 197 0
 2831807 2831808 B14911_03499 B14911_03504 FALSE 0.043 3 0
 2831808 2831809 B14911_03504 B14911_03509 TRUE 0.974 -7 1.196
 2831809 2831810 B14911_03509 B14911_03514 FALSE 0.009 95 0
 2831810 2831811 B14911_03514 B14911_03519 FALSE 0.37 -9 3.178
 2831811 2831812 B14911_03519 B14911_03524 FALSE 0.435 0 -0.287
 2831812 2831813 B14911_03524 B14911_03529 TRUE 0.91 71 0.811
 2831813 2831814 B14911_03529 B14911_03534 TRUE 0.983 -3 9.927
 2831814 2831815 B14911_03534 B14911_03539 TRUE 0.826 -3 -4.352
 2831815 2831816 B14911_03539 B14911_03544 TRUE 0.806 -3 0
 2831816 2831817 B14911_03544 B14911_03549 FALSE 0.007 255 0
 2831817 2831818 B14911_03549 B14911_03554 FALSE 0.009 179 0
 2831818 2831819 B14911_03554 B14911_03559 TRUE 0.899 230 -1.162
 2831819 2831820 B14911_03559 B14911_03564 TRUE 0.962 18 -6.014
 2831820 2831821 B14911_03564 B14911_03569 FALSE 0.017 34 -0.692
 2831821 2831822 B14911_03569 B14911_03574 FALSE 0.045 1 0
 2831822 2831823 B14911_03574 B14911_03579 TRUE 0.784 13 0
 2831823 2831824 B14911_03579 B14911_03584 FALSE 0.369 30 0
 2831824 2831825 B14911_03584 B14911_03589 FALSE 0.037 -3 -0.692
 2831825 2831826 B14911_03589 B14911_03594 TRUE 0.788 -16 1.204
 2831826 2831827 B14911_03594 B14911_03599 FALSE 0.004 705 0
 2831827 2831828 B14911_03599 B14911_03604 FALSE 0.007 234 0
 2831828 2831829 B14911_03604 B14911_03609 TRUE 0.705 33 -1.385
 2831829 2831830 B14911_03609 B14911_03614 TRUE 0.51 94 -4.005
 2831830 2831831 B14911_03614 B14911_03619 TRUE 0.985 13 13.664
 2831831 2831832 B14911_03619 B14911_03624 TRUE 0.968 -21 37.676
 2831832 2831833 B14911_03624 B14911_03629 FALSE 0.276 84 -5.28
 2831833 2831834 B14911_03629 B14911_03634 FALSE 0.126 195 -4.263
 2831834 2831835 B14911_03634 B14911_03639 FALSE 0.199 -22 -8.851
 2831835 2831836 B14911_03639 B14911_03644 TRUE 0.857 0 -10.538
 2831836 2831837 B14911_03644 B14911_03649 TRUE 0.94 22 -16.061
 2831837 2831838 B14911_03649 B14911_03654 TRUE 0.545 168 -15.213
 2831838 2831839 B14911_03654 B14911_03659 FALSE 0.006 276 0
 2831839 2831840 B14911_03659 B14911_03664 FALSE 0.009 87 0
 2831840 2831841 B14911_03664 B14911_03669 FALSE 0.025 22 0
 2831841 2831842 B14911_03669 B14911_03674 FALSE 0.012 64 0
 2831842 2831843 B14911_03674 B14911_03679 FALSE 0.006 303 0
 2831843 2831844 B14911_03679 B14911_03684 FALSE 0.485 15 0
 2831844 2831845 B14911_03684 B14911_03689 FALSE 0.019