VIMSS Operon Predictions for Blastopirellula marina DSM 3645

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

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Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 2758418 2758419 DSM3645_r10667 DSM3645_08322 FALSE 0.092 370 0
 2758419 2758420 DSM3645_08322 DSM3645_08327 FALSE 0.486 57 -12.453
 2758420 2758421 DSM3645_08327 DSM3645_08332 FALSE 0.349 102 -17.746
 2758423 2758424 DSM3645_08342 DSM3645_08347 FALSE 0.386 207 -19.586
 2758424 2758425 DSM3645_08347 DSM3645_08352 TRUE 0.985 5 34.236
 2758426 2758427 DSM3645_08357 DSM3645_08362 FALSE 0.291 81 -0.238
 2758427 2758428 DSM3645_08362 DSM3645_08367 TRUE 0.967 66 1168.09
 2758428 2758429 DSM3645_08367 DSM3645_08372 TRUE 0.961 76 1197.283
 2758429 2758430 DSM3645_08372 DSM3645_08377 TRUE 0.989 76 1204.4
 2758430 2758431 DSM3645_08377 DSM3645_08382 TRUE 0.974 167 664.555
 2758431 2758432 DSM3645_08382 DSM3645_08387 FALSE 0.317 200 -0.941
 2758432 2758433 DSM3645_08387 DSM3645_08392 FALSE 0.319 183 -0.168
 2758436 2758437 DSM3645_08407 DSM3645_08412 FALSE 0.162 86 0
 2758437 2758438 DSM3645_08412 DSM3645_08417 FALSE 0.153 155 0
 2758438 2758439 DSM3645_08417 DSM3645_08422 FALSE 0.331 259 -10.611
 2758439 2758440 DSM3645_08422 DSM3645_08427 TRUE 0.995 37 68.641
 2758440 2758441 DSM3645_08427 DSM3645_08432 TRUE 0.954 31 10.045
 2758441 2758442 DSM3645_08432 DSM3645_08437 TRUE 0.939 0 1.792
 2758442 2758443 DSM3645_08437 DSM3645_08442 TRUE 0.996 3 283.305
 2758443 2758444 DSM3645_08442 DSM3645_08447 FALSE 0.364 21 0
 2758444 2758445 DSM3645_08447 DSM3645_08452 FALSE 0.316 42 0
 2758445 2758446 DSM3645_08452 DSM3645_08457 FALSE 0.333 38 0
 2758446 2758447 DSM3645_08457 DSM3645_08462 FALSE 0.451 123 0
 2758447 2758448 DSM3645_08462 DSM3645_08467 FALSE 0.158 163 0
 2758448 2758449 DSM3645_08467 DSM3645_08472 TRUE 0.909 250 58.625
 2758449 2758450 DSM3645_08472 DSM3645_08477 FALSE 0.211 65 0
 2758450 2758451 DSM3645_08477 DSM3645_08482 FALSE 0.102 339 0
 2758451 2758452 DSM3645_08482 DSM3645_08487 TRUE 0.566 203 0
 2758452 2758453 DSM3645_08487 DSM3645_08492 TRUE 0.826 105 0
 2758455 2758456 DSM3645_08502 DSM3645_08507 FALSE 0.232 174 -1.62
 2758456 2758457 DSM3645_08507 DSM3645_08512 TRUE 0.956 46 11.114
 2758458 2758459 DSM3645_08517 DSM3645_08522 TRUE 0.598 104 -16.519
 2758459 2758460 DSM3645_08522 DSM3645_08527 FALSE 0.373 18 0
 2758460 2758461 DSM3645_08527 DSM3645_08532 FALSE 0.312 43 0
 2758461 2758462 DSM3645_08532 DSM3645_08537 TRUE 0.997 22 681.697
 2758462 2758463 DSM3645_08537 DSM3645_08542 TRUE 0.991 76 164.146
 2758463 2758464 DSM3645_08542 DSM3645_08547 TRUE 0.997 0 166.122
 2758464 2758465 DSM3645_08547 DSM3645_08552 TRUE 0.997 -3 231.962
 2758465 2758466 DSM3645_08552 DSM3645_08557 TRUE 0.992 -3 225.829
 2758466 2758467 DSM3645_08557 DSM3645_08562 TRUE 0.988 138 33.93
 2758467 2758468 DSM3645_08562 DSM3645_08567 TRUE 0.997 15 270.061
 2758468 2758469 DSM3645_08567 DSM3645_08572 TRUE 0.995 46 63.358
 2758469 2758470 DSM3645_08572 DSM3645_08577 FALSE 0.186 178 -0.155
 2758470 2758471 DSM3645_08577 DSM3645_08582 FALSE 0.226 175 -0.99
 2758472 2758473 DSM3645_08587 DSM3645_t10649 FALSE 0.162 169 0
 2758473 2758474 DSM3645_t10649 DSM3645_08592 FALSE 0.151 103 0
 2758474 2758475 DSM3645_08592 DSM3645_08597 TRUE 0.652 7 -2.97
 2758475 2758476 DSM3645_08597 DSM3645_08602 TRUE 0.63 13 -1.604
 2758477 2758478 DSM3645_08607 DSM3645_08612 FALSE 0.205 381 -1.145
 2758478 2758479 DSM3645_08612 DSM3645_08617 TRUE 0.956 31 0.962
 2758482 2758483 DSM3645_08632 DSM3645_08637 FALSE 0.245 66 -0.168
 2758483 2758484 DSM3645_08637 DSM3645_08642 TRUE 0.952 51 22.773
 2758484 2758485 DSM3645_08642 DSM3645_08647 TRUE 0.974 0 24.11
 2758486 2758487 DSM3645_08652 DSM3645_08657 FALSE 0.085 668 0
 2758487 2758488 DSM3645_08657 DSM3645_08662 FALSE 0.266 91 -0.168
 2758488 2758489 DSM3645_08662 DSM3645_08667 FALSE 0.174 204 0
 2758490 2758491 DSM3645_08672 DSM3645_08677 FALSE 0.207 203 -0.168
 2758491 2758492 DSM3645_08677 DSM3645_08682 TRUE 0.949 1 1.861
 2758492 2758493 DSM3645_08682 DSM3645_08687 FALSE 0.357 25 0
 2758493 2758494 DSM3645_08687 DSM3645_08692 FALSE 0.162 171 0
 2758494 2758495 DSM3645_08692 DSM3645_08697 FALSE 0.148 108 0
 2758499 2758500 DSM3645_08717 DSM3645_08722 FALSE 0.124 291 0
 2758500 2758501 DSM3645_08722 DSM3645_08727 TRUE 0.866 92 0.58
 2758501 2758502 DSM3645_08727 DSM3645_08732 FALSE 0.157 160 0
 2758503 2758504 DSM3645_08737 DSM3645_08742 TRUE 0.955 89 1.861
 2758504 2758505 DSM3645_08742 DSM3645_08747 FALSE 0.248 255 -0.168
 2758505 2758506 DSM3645_08747 DSM3645_08752 TRUE 0.591 40 -20.463
 2758506 2758507 DSM3645_08752 DSM3645_08757 TRUE 0.947 249 475.389
 2758507 2758508 DSM3645_08757 DSM3645_08762 TRUE 0.928 110 63.569
 2758508 2758509 DSM3645_08762 DSM3645_08767 TRUE 0.742 125 -1.889
 2758509 2758510 DSM3645_08767 DSM3645_08772 TRUE 0.963 44 -10.105
 2758510 2758511 DSM3645_08772 DSM3645_08777 TRUE 0.964 27 -8.936
 2758512 2758513 DSM3645_08782 DSM3645_08787 FALSE 0.141 133 0
 2758513 2758514 DSM3645_08787 DSM3645_08792 FALSE 0.396 9 0
 2758515 2758516 DSM3645_08797 DSM3645_08802 TRUE 0.838 84 1.861
 2758516 2758517 DSM3645_08802 DSM3645_08807 TRUE 0.948 4 1.861
 2758518 2758519 DSM3645_08812 DSM3645_08817 FALSE 0.454 6 -0.168
 2758519 2758520 DSM3645_08817 DSM3645_08822 TRUE 0.931 2 -2.215
 2758521 2758522 DSM3645_08827 DSM3645_08832 FALSE 0.453 23 -0.806
 2758522 2758523 DSM3645_08832 DSM3645_08837 FALSE 0.32 111 -1.903
 2758523 2758524 DSM3645_08837 DSM3645_08842 TRUE 0.716 233 -0.514
 2758526 2758527 DSM3645_08852 DSM3645_08857 FALSE 0.312 43 0
 2758527 2758528 DSM3645_08857 DSM3645_08862 FALSE 0.059 555 0
 2758528 2758529 DSM3645_08862 DSM3645_08867 FALSE 0.367 20 0
 2758529 2758530 DSM3645_08867 DSM3645_08872 FALSE 0.097 353 0
 2758531 2758532 DSM3645_08877 DSM3645_08882 FALSE 0.227 60 0
 2758533 2758534 DSM3645_08887 DSM3645_08892 TRUE 0.964 18 6.317
 2758534 2758535 DSM3645_08892 DSM3645_08897 FALSE 0.171 191 0
 2758535 2758536 DSM3645_08897 DSM3645_08902 FALSE 0.145 113 0
 2758538 2758539 DSM3645_08912 DSM3645_08917 TRUE 0.69 -3 -6.375
 2758540 2758541 DSM3645_08922 DSM3645_08927 FALSE 0.158 94 0
 2758545 2758546 DSM3645_08947 DSM3645_08952 FALSE 0.151 153 0
 2758546 2758547 DSM3645_08952 DSM3645_08957 TRUE 0.986 0 647.929
 2758547 2758548 DSM3645_08957 DSM3645_08962 FALSE 0.216 128 -6.594
 2758549 2758550 DSM3645_08967 DSM3645_08972 FALSE 0.16 90 0
 2758550 2758551 DSM3645_08972 DSM3645_08977 FALSE 0.148 108 0
 2758553 2758554 DSM3645_08987 DSM3645_08992 FALSE 0.422 139 -0.255
 2758554 2758555 DSM3645_08992 DSM3645_08997 TRUE 0.96 -3 1.861
 2758555 2758556 DSM3645_08997 DSM3645_09002 FALSE 0.215 289 -0.168
 2758557 2758558 DSM3645_09007 DSM3645_09012 TRUE 0.984 1 490.973
 2758562 2758563 DSM3645_09032 DSM3645_09037 FALSE 0.171 192 0
 2758563 2758564 DSM3645_09037 DSM3645_09042 TRUE 0.502 15 0
 2758564 2758565 DSM3645_09042 DSM3645_09047 FALSE 0.41 23 -0.168
 2758565 2758566 DSM3645_09047 DSM3645_09052 FALSE 0.07 463 0
 2758566 2758567 DSM3645_09052 DSM3645_09057 FALSE 0.155 157 0
 2758571 2758572 DSM3645_09077 DSM3645_09082 FALSE 0.114 312 0
 2758572 2758573 DSM3645_09082 DSM3645_09087 TRUE 0.937 72 122.517
 2758573 2758574 DSM3645_09087 DSM3645_09092 TRUE 0.931 41 -1.517
 2758574 2758575 DSM3645_09092 DSM3645_09097 TRUE 0.994 15 4.382
 2758575 2758576 DSM3645_09097 DSM3645_09102 FALSE 0.442 515 -2.104
 2758576 2758577 DSM3645_09102 DSM3645_09107 TRUE 0.924 192 -9.515
 2758577 2758578 DSM3645_09107 DSM3645_09112 TRUE 0.529 468 -16.22
 2758578 2758579 DSM3645_09112 DSM3645_09117 FALSE 0.39 11 0
 2758580 2758581 DSM3645_09122 DSM3645_09127 FALSE 0.163 85 0
 2758581 2758582 DSM3645_09127 DSM3645_09132 FALSE 0.267 53 0
 2758583 2758584 DSM3645_09137 DSM3645_09142 TRUE 0.988 52 0.68
 2758584 2758585 DSM3645_09142 DSM3645_09147 FALSE 0.422 51 -0.168
 2758585 2758586 DSM3645_09147 DSM3645_09152 FALSE 0.239 136 -0.168
 2758586 2758587 DSM3645_09152 DSM3645_09157 FALSE 0.141 133 0
 2758587 2758588 DSM3645_09157 DSM3645_09162 FALSE 0.141 134 0
 2758588 2758589 DSM3645_09162 DSM3645_09167 FALSE 0.22 187 -0.307
 2758589 2758590 DSM3645_09167 DSM3645_09172 FALSE 0.19 251 -0.181
 2758592 2758593 DSM3645_09182 DSM3645_09187 FALSE 0.162 86 0
 2758594 2758595 DSM3645_09192 DSM3645_09197 TRUE 0.509 -19 -0.168
 2758595 2758596 DSM3645_09197 DSM3645_09202 FALSE 0.169 138 -0.168
 2758597 2758598 DSM3645_09207 DSM3645_09212 FALSE 0.087 384 0
 2758598 2758599 DSM3645_09212 DSM3645_09217 FALSE 0.212 82 0
 2758599 2758600 DSM3645_09217 DSM3645_09222 FALSE 0.299 211 0
 2758600 2758601 DSM3645_09222 DSM3645_09227 TRUE 0.855 32 0
 2758601 2758602 DSM3645_09227 DSM3645_09232 TRUE 0.992 0 19.274
 2758602 2758603 DSM3645_09232 DSM3645_09237 TRUE 0.972 79 13.607
 2758603 2758604 DSM3645_09237 DSM3645_09242 TRUE 0.993 5 53.332
 2758604 2758605 DSM3645_09242 DSM3645_09247 FALSE 0.141 137 0
 2758605 2758606 DSM3645_09247 DSM3645_09252 FALSE 0.146 147 0
 2758606 2758607 DSM3645_09252 DSM3645_09257 TRUE 0.983 100 285.827
 2758608 2758609 DSM3645_09262 DSM3645_09267 FALSE 0.285 49 0
 2758610 2758611 DSM3645_09272 DSM3645_09277 FALSE 0.141 133 0
 2758611 2758612 DSM3645_09277 DSM3645_09282 FALSE 0.167 219 0
 2758612 2758613 DSM3645_09282 DSM3645_09287 TRUE 0.897 84 29.023
 2758614 2758615 DSM3645_09292 DSM3645_09297 TRUE 0.93 73 26.082
 2758615 2758616 DSM3645_09297 DSM3645_09302 TRUE 0.945 202 150.006
 2758616 2758617 DSM3645_09302 DSM3645_09307 TRUE 0.949 121 1129.532
 2758617 2758618 DSM3645_09307 DSM3645_09312 TRUE 0.996 0 1095.789
 2758618 2758619 DSM3645_09312 DSM3645_09317 TRUE 0.984 59 51.509
 2758621 2758622 DSM3645_09327 DSM3645_09332 TRUE 0.99 69 1272.143
 2758622 2758623 DSM3645_09332 DSM3645_09337 TRUE 0.995 17 386.921
 2758623 2758624 DSM3645_09337 DSM3645_09342 TRUE 0.992 52 383.966
 2758624 2758625 DSM3645_09342 DSM3645_09347 TRUE 0.991 59 830.311
 2758625 2758626 DSM3645_09347 DSM3645_09352 TRUE 0.996 0 827.683
 2758626 2758627 DSM3645_09352 DSM3645_09357 TRUE 0.993 43 671.31
 2758627 2758628 DSM3645_09357 DSM3645_09362 TRUE 0.989 41 592.123
 2758628 2758629 DSM3645_09362 DSM3645_09367 TRUE 0.99 36 743.938
 2758629 2758630 DSM3645_09367 DSM3645_09372 TRUE 0.995 20 931.023
 2758630 2758631 DSM3645_09372 DSM3645_09377 TRUE 0.994 39 1040.322
 2758631 2758632 DSM3645_09377 DSM3645_09382 TRUE 0.992 53 1056.895
 2758632 2758633 DSM3645_09382 DSM3645_09387 TRUE 0.993 46 1134.691
 2758633 2758634 DSM3645_09387 DSM3645_09392 TRUE 0.982 62 1079.274
 2758634 2758635 DSM3645_09392 DSM3645_09397 TRUE 0.99 35 1122.709
 2758635 2758636 DSM3645_09397 DSM3645_09402 TRUE 0.993 54 1116.106
 2758636 2758637 DSM3645_09402 DSM3645_09407 TRUE 0.983 156 1011.17
 2758637 2758638 DSM3645_09407 DSM3645_09412 TRUE 0.863 226 -0.861
 2758638 2758639 DSM3645_09412 DSM3645_09417 FALSE 0.335 37 0
 2758639 2758640 DSM3645_09417 DSM3645_09422 FALSE 0.345 33 0
 2758640 2758641 DSM3645_09422 DSM3645_09427 TRUE 0.996 39 1154.089
 2758641 2758642 DSM3645_09427 DSM3645_09432 TRUE 0.93 286 205.375
 2758642 2758643 DSM3645_09432 DSM3645_09437 TRUE 0.99 101 803.248
 2758643 2758644 DSM3645_09437 DSM3645_09442 TRUE 0.895 427 772.174
 2758644 2758645 DSM3645_09442 DSM3645_09447 TRUE 0.97 122 1028.887
 2758645 2758646 DSM3645_09447 DSM3645_09452 TRUE 0.984 56 775.878
 2758646 2758647 DSM3645_09452 DSM3645_09457 TRUE 0.987 72 1160.173
 2758647 2758648 DSM3645_09457 DSM3645_09462 TRUE 0.924 147 94.746
 2758648 2758649 DSM3645_09462 DSM3645_09467 TRUE 0.944 28 1.861
 2758649 2758650 DSM3645_09467 DSM3645_t10665 FALSE 0.146 111 0
 2758652 2758653 DSM3645_09477 DSM3645_t10663 FALSE 0.187 73 0
 2758653 2758654 DSM3645_t10663 DSM3645_t10661 FALSE 0.163 85 0
 2758654 2758655 DSM3645_t10661 DSM3645_t10659 FALSE 0.143 120 0
 2758655 2758656 DSM3645_t10659 DSM3645_t10657 FALSE 0.148 107 0
 2758657 2758658 DSM3645_09482 DSM3645_09487 FALSE 0.141 133 0
 2758658 2758659 DSM3645_09487 DSM3645_09492 FALSE 0.267 53 0
 2758663 2758664 DSM3645_09512 DSM3645_09517 FALSE 0.073 443 0
 2758664 2758665 DSM3645_09517 DSM3645_09522 FALSE 0.212 134 0
 2758665 2758666 DSM3645_09522 DSM3645_09527 FALSE 0.228 102 0
 2758668 2758669 DSM3645_09537 DSM3645_09542 FALSE 0.39 11 0