VIMSS Operon Predictions for Burkholderia pseudomallei 1710b

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 1064117 1064118 BURPS1710b_0001 BURPS1710b_0002 rrfA rrlA FALSE 0.009 182 0
 1064118 1064119 BURPS1710b_0002 BURPS1710b_0003 rrlA FALSE 0.002 354 0
 1064119 1064120 BURPS1710b_0003 BURPS1710b_0004 FALSE 0.037 35 0
 1064120 1064121 BURPS1710b_0004 BURPS1710b_0005 rrsA FALSE 0.028 83 0
 1064121 1064122 BURPS1710b_0005 BURPS1710b_0006 rrsA FALSE 0.001 549 0
 1064123 1064124 BURPS1710b_0007 BURPS1710b_0008 paaG paaB FALSE 0.002 -597 0
 1064124 1064125 BURPS1710b_0008 BURPS1710b_0009 paaB paaI FALSE 0.064 11 0
 1064125 1064126 BURPS1710b_0009 BURPS1710b_0010 paaI paaD TRUE 0.979 36 192.05
 1064126 1064127 BURPS1710b_0010 BURPS1710b_0011 paaD paaK TRUE 0.989 2 138.48
 1064127 1064128 BURPS1710b_0011 BURPS1710b_0012 paaK FALSE 0.022 122 -0.73
 1064128 1064129 BURPS1710b_0012 BURPS1710b_0013 paaR FALSE 0.042 27 -0.561
 1064129 1064130 BURPS1710b_0013 BURPS1710b_0014 paaR FALSE 0.022 122 -1.465
 1064136 1064137 BURPS1710b_0020 BURPS1710b_0021 pyrE FALSE 0.003 302 0
 1064137 1064138 BURPS1710b_0021 BURPS1710b_0022 wrbA FALSE 0.172 168 0.186
 1064138 1064139 BURPS1710b_0022 BURPS1710b_0023 wrbA argC FALSE 0.267 153 0.188
 1064139 1064140 BURPS1710b_0023 BURPS1710b_0024 argC FALSE 0.004 475 1.983
 1064140 1064141 BURPS1710b_0024 BURPS1710b_0025 TRUE 0.548 127 1.966
 1064141 1064142 BURPS1710b_0025 BURPS1710b_0026 ompW TRUE 0.834 20 3.839
 1064145 1064146 BURPS1710b_0029 BURPS1710b_0030 FALSE 0.265 99 0
 1064149 1064150 BURPS1710b_0033 BURPS1710b_0034 FALSE 0.011 172 0
 1064153 1064154 BURPS1710b_0037 BURPS1710b_0038 FALSE 0.029 65 0
 1064154 1064155 BURPS1710b_0038 BURPS1710b_0039 FALSE 0.003 -324 0
 1064155 1064156 BURPS1710b_0039 BURPS1710b_0040 gmhA TRUE 0.933 19 18.721
 1064156 1064157 BURPS1710b_0040 BURPS1710b_0041 gmhA hemU-1 TRUE 0.874 123 66.302
 1064160 1064161 BURPS1710b_0044 BURPS1710b_0045 glob1 FALSE 0.008 194 0
 1064161 1064162 BURPS1710b_0045 BURPS1710b_0046 lrp FALSE 0.001 -826 0
 1064163 1064164 BURPS1710b_0047 BURPS1710b_0048 bprA FALSE 0.012 240 1.785
 1064164 1064165 BURPS1710b_0048 BURPS1710b_0049 bprA FALSE 0.023 301 -0.7
 1064167 1064168 BURPS1710b_0051 BURPS1710b_0052 fabK FALSE 0.001 456 -10.661
 1064169 1064170 BURPS1710b_0053 BURPS1710b_0054 nylA TRUE 0.702 95 -0.544
 1064171 1064172 BURPS1710b_0055 BURPS1710b_0056 metF TRUE 0.846 18 6.039
 1064172 1064173 BURPS1710b_0056 BURPS1710b_0057 ahcY TRUE 0.559 164 5.439
 1064173 1064174 BURPS1710b_0057 BURPS1710b_0058 ahcY fliA FALSE 0.055 354 -17.281
 1064176 1064177 BURPS1710b_0060 BURPS1710b_0061 flhG flhF TRUE 0.932 -7 69.312
 1064177 1064178 BURPS1710b_0061 BURPS1710b_0062 flhF flhA TRUE 0.994 -3 81.609
 1064178 1064179 BURPS1710b_0062 BURPS1710b_0063 flhA flhB TRUE 0.999 -3 306.043
 1064179 1064180 BURPS1710b_0063 BURPS1710b_0064 flhB FALSE 0.002 501 -14.52
 1064180 1064181 BURPS1710b_0064 BURPS1710b_0065 FALSE 0.036 38 0
 1064181 1064182 BURPS1710b_0065 BURPS1710b_0066 FALSE 0 -1227 0
 1064184 1064185 BURPS1710b_0068 BURPS1710b_0069 cheZ FALSE 0.007 198 2.533
 1064185 1064186 BURPS1710b_0069 BURPS1710b_0070 cheZ cheY TRUE 0.932 2 0.003
 1064186 1064187 BURPS1710b_0070 BURPS1710b_0071 cheY cheB TRUE 0.764 178 0.003
 1064187 1064188 BURPS1710b_0071 BURPS1710b_0072 cheB cheD TRUE 0.991 6 41.155
 1064188 1064189 BURPS1710b_0072 BURPS1710b_0073 cheD cheR TRUE 0.991 -3 45.044
 1064189 1064190 BURPS1710b_0073 BURPS1710b_0074 cheR tsr TRUE 0.983 7 2.765
 1064192 1064193 BURPS1710b_0075 BURPS1710b_0077 cheW-2 cheA TRUE 0.996 31 180.982
 1064193 1064194 BURPS1710b_0077 BURPS1710b_0078 cheA cheY1 TRUE 0.996 32 122.333
 1064194 1064195 BURPS1710b_0078 BURPS1710b_0079 cheY1 motB FALSE 0.134 31 -4.385
 1064195 1064196 BURPS1710b_0079 BURPS1710b_0080 motB motA TRUE 0.997 17 268.182
 1064196 1064197 BURPS1710b_0080 BURPS1710b_0081 motA flhC TRUE 0.635 194 97.874
 1064197 1064198 BURPS1710b_0081 BURPS1710b_0082 flhC flhD TRUE 0.819 94 0.013
 1064202 1064203 BURPS1710b_0086 BURPS1710b_0087 cof FALSE 0.437 97 -0.581
 1064206 1064207 BURPS1710b_0090 BURPS1710b_0091 fliC FALSE 0.033 44 0
 1064207 1064208 BURPS1710b_0091 BURPS1710b_0092 fliD FALSE 0 -1567 0
 1064208 1064209 BURPS1710b_0092 BURPS1710b_0093 fliD TRUE 0.83 14 2.831
 1064209 1064210 BURPS1710b_0093 BURPS1710b_0094 FALSE 0.028 88 -4.64
 1064210 1064211 BURPS1710b_0094 BURPS1710b_0095 vioA TRUE 0.896 -3 0.866
 1064211 1064212 BURPS1710b_0095 BURPS1710b_0096 vioA fabH TRUE 0.845 -3 -0.719
 1064212 1064213 BURPS1710b_0096 BURPS1710b_0097 fabH TRUE 0.929 9 0.809
 1064215 1064216 BURPS1710b_0099 BURPS1710b_0100 fabH TRUE 0.787 -60 25.375
 1064216 1064217 BURPS1710b_0100 BURPS1710b_0101 TRUE 0.938 0 16.504
 1064217 1064218 BURPS1710b_0101 BURPS1710b_0102 TRUE 0.892 2 1.802
 1064221 1064222 BURPS1710b_0105 BURPS1710b_0106 acpA FALSE 0.003 283 0
 1064222 1064223 BURPS1710b_0106 BURPS1710b_0107 FALSE 0.033 44 0
 1064223 1064224 BURPS1710b_0107 BURPS1710b_0108 TRUE 0.975 -3 37.066
 1064224 1064225 BURPS1710b_0108 BURPS1710b_0109 TRUE 0.904 60 32.045
 1064226 1064227 BURPS1710b_0110 BURPS1710b_0111 pcaD FALSE 0 712 0
 1064228 1064229 BURPS1710b_0112 BURPS1710b_0113 glcD1 FALSE 0.053 269 -7.315
 1064229 1064230 BURPS1710b_0113 BURPS1710b_0114 glcD1 FALSE 0.269 183 0.072
 1064230 1064231 BURPS1710b_0114 BURPS1710b_0115 FALSE 0 901 -4.182
 1064231 1064232 BURPS1710b_0115 BURPS1710b_0116 FALSE 0.013 157 0.01
 1064232 1064233 BURPS1710b_0116 BURPS1710b_0117 FALSE 0 2282 -0.191
 1064233 1064234 BURPS1710b_0117 BURPS1710b_0118 FALSE 0.418 8 2.89
 1064234 1064235 BURPS1710b_0118 BURPS1710b_0119 FALSE 0 1470 0
 1064236 1064237 BURPS1710b_0120 BURPS1710b_0121 FALSE 0.003 266 0
 1064239 1064240 BURPS1710b_0123 BURPS1710b_0124 TRUE 0.566 -3 0.377
 1064240 1064241 BURPS1710b_0124 BURPS1710b_0125 FALSE 0.002 522 1.726
 1064241 1064242 BURPS1710b_0125 BURPS1710b_0126 FALSE 0.443 172 2.584
 1064242 1064243 BURPS1710b_0126 BURPS1710b_0127 gcvT FALSE 0 799 -5.372
 1064243 1064244 BURPS1710b_0127 BURPS1710b_0128 gcvT gcvH TRUE 0.999 94 611.383
 1064244 1064245 BURPS1710b_0128 BURPS1710b_0129 gcvH gcvP FALSE 0.446 550 430.68
 1064245 1064246 BURPS1710b_0129 BURPS1710b_0130 gcvP FALSE 0.376 152 1.303
 1064246 1064247 BURPS1710b_0130 BURPS1710b_0131 sdaA TRUE 0.773 34 3.037
 1064249 1064250 BURPS1710b_0133 BURPS1710b_0134 ilvG TRUE 0.772 29 1.872
 1064255 1064256 BURPS1710b_0139 BURPS1710b_0140 eutC FALSE 0.368 66 0.395
 1064256 1064257 BURPS1710b_0140 BURPS1710b_0141 eutC eutB TRUE 0.999 -3 173.289
 1064257 1064258 BURPS1710b_0141 BURPS1710b_0143 eutB FALSE 0.066 10 0
 1064258 1064259 BURPS1710b_0143 BURPS1710b_0142 eat FALSE 0 -1456 0
 1064260 1064261 BURPS1710b_0144 BURPS1710b_0145 FALSE 0.069 40 0.092
 1064263 1064264 BURPS1710b_0147 BURPS1710b_0149 FALSE 0.004 241 0
 1064265 1064266 BURPS1710b_0148 BURPS1710b_0150 cadA TRUE 0.754 13 1.53
 1064267 1064268 BURPS1710b_0151 BURPS1710b_0152 cadR TRUE 0.894 85 2.128
 1064271 1064272 BURPS1710b_0154 BURPS1710b_0156 argT FALSE 0.325 61 0.375
 1064272 1064273 BURPS1710b_0156 BURPS1710b_0157 argT TRUE 0.914 54 6.649
 1064273 1064274 BURPS1710b_0157 BURPS1710b_0158 FALSE 0.021 125 0
 1064274 1064275 BURPS1710b_0158 BURPS1710b_0159 FALSE 0 -1236 0
 1064276 1064277 BURPS1710b_0160 BURPS1710b_0161 aidB FALSE 0 -1530 0
 1064279 1064280 BURPS1710b_0163 BURPS1710b_0164 fcs FALSE 0.003 -231 0
 1064281 1064282 BURPS1710b_0165 BURPS1710b_0166 livK putA TRUE 0.832 85 8.791
 1064283 1064284 BURPS1710b_0167 BURPS1710b_0168 FALSE 0.027 95 0
 1064285 1064286 BURPS1710b_0169 BURPS1710b_0170 priA hemE FALSE 0.053 441 -8.639
 1064287 1064288 BURPS1710b_0171 BURPS1710b_0172 pheC FALSE 0.003 -277 0
 1064289 1064290 BURPS1710b_0173 BURPS1710b_0174 FALSE 0.002 324 0
 1064292 1064293 BURPS1710b_0176 BURPS1710b_0177 atpC FALSE 0.088 233 -23.493
 1064295 1064296 BURPS1710b_0179 BURPS1710b_0180 atpD atpG TRUE 0.999 80 1254.51
 1064296 1064297 BURPS1710b_0180 BURPS1710b_0181 atpG atpA TRUE 0.999 72 1469.186
 1064297 1064298 BURPS1710b_0181 BURPS1710b_0182 atpA atpH TRUE 0.999 47 1164.594
 1064298 1064299 BURPS1710b_0182 BURPS1710b_0183 atpH atpF TRUE 1 3 871.612
 1064299 1064300 BURPS1710b_0183 BURPS1710b_0184 atpF atpE TRUE 0.998 128 471.952
 1064300 1064301 BURPS1710b_0184 BURPS1710b_0185 atpE atpB TRUE 0.998 77 435.703
 1064301 1064302 BURPS1710b_0185 BURPS1710b_0186 atpB FALSE 0.01 914 -31.067
 1064302 1064303 BURPS1710b_0186 BURPS1710b_0187 parB2 TRUE 0.617 -10 -9.181
 1064303 1064304 BURPS1710b_0187 BURPS1710b_0188 parB2 soj TRUE 0.973 36 919.843
 1064304 1064305 BURPS1710b_0188 BURPS1710b_0189 soj gidB TRUE 0.988 53 352.117
 1064305 1064306 BURPS1710b_0189 BURPS1710b_0190 gidB gidA TRUE 0.997 -3 514.217
 1064306 1064307 BURPS1710b_0190 BURPS1710b_0191 gidA livF FALSE 0.207 162 -4.869
 1064307 1064308 BURPS1710b_0191 BURPS1710b_0192 livF TRUE 0.998 3 43.508
 1064308 1064309 BURPS1710b_0192 BURPS1710b_0193 livH TRUE 0.996 5 42.782
 1064309 1064310 BURPS1710b_0193 BURPS1710b_0194 livH livK TRUE 0.543 313 22.098
 1064310 1064311 BURPS1710b_0194 BURPS1710b_0195 livK FALSE 0.03 57 0.068
 1064311 1064312 BURPS1710b_0195 BURPS1710b_0196 FALSE 0.008 194 0.051
 1064312 1064313 BURPS1710b_0196 BURPS1710b_0197 TRUE 0.999 0 165.494
 1064313 1064314 BURPS1710b_0197 BURPS1710b_0198 livK TRUE 0.987 140 78.161
 1064314 1064315 BURPS1710b_0198 BURPS1710b_0199 livK TRUE 0.992 68 98.444
 1064315 1064316 BURPS1710b_0199 BURPS1710b_0200 TRUE 0.999 -3 126.477
 1064316 1064317 BURPS1710b_0200 BURPS1710b_0201 betA FALSE 0.15 500 -0.99
 1064317 1064318 BURPS1710b_0201 BURPS1710b_0202 betA mmsA FALSE 0.243 175 -12.065
 1064319 1064320 BURPS1710b_0203 BURPS1710b_0204 FALSE 0.04 391 -0.56
 1064322 1064323 BURPS1710b_0206 BURPS1710b_0207 phhA TRUE 0.918 18 4.902
 1064323 1064324 BURPS1710b_0207 BURPS1710b_0208 FALSE 0.04 435 3.6
 1064324 1064325 BURPS1710b_0208 BURPS1710b_0209 tctE TRUE 0.937 107 5.76
 1064326 1064327 BURPS1710b_0210 BURPS1710b_0211 frp FALSE 0.004 259 -0.497
 1064327 1064328 BURPS1710b_0211 BURPS1710b_0212 frp FALSE 0.074 238 -1.906
 1064328 1064329 BURPS1710b_0212 BURPS1710b_0213 TRUE 0.822 40 2.224
 1064329 1064330 BURPS1710b_0213 BURPS1710b_0214 FALSE 0.018 343 1.749
 1064330 1064331 BURPS1710b_0214 BURPS1710b_0215 TRUE 0.711 -87 23.382
 1064331 1064332 BURPS1710b_0215 BURPS1710b_0216 FALSE 0.006 217 0
 1064332 1064333 BURPS1710b_0216 BURPS1710b_0217 FALSE 0.001 430 0
 1064333 1064334 BURPS1710b_0217 BURPS1710b_0218 FALSE 0.001 620 -25.413
 1064334 1064335 BURPS1710b_0218 BURPS1710b_0219 hpaH FALSE 0.002 319 2.024
 1064336 1064337 BURPS1710b_0220 BURPS1710b_0221 gspD gspE TRUE 0.998 -3 214.296
 1064337 1064338 BURPS1710b_0221 BURPS1710b_0222 gspE gspF TRUE 0.998 5 400.803
 1064340 1064341 BURPS1710b_0224 BURPS1710b_0225 gspG gspH TRUE 0.99 35 8.501
 1064341 1064342 BURPS1710b_0225 BURPS1710b_0226 gspH gspI TRUE 0.994 3 13.796
 1064342 1064343 BURPS1710b_0226 BURPS1710b_0227 gspI gspJ TRUE 0.89 -22 5.312
 1064343 1064344 BURPS1710b_0227 BURPS1710b_0228 gspJ gspK TRUE 0.97 2 2.916
 1064344 1064345 BURPS1710b_0228 BURPS1710b_0229 gspK gspL TRUE 0.806 67 10.486
 1064345 1064346 BURPS1710b_0229 BURPS1710b_0230 gspL gspM TRUE 0.929 -3 8.719
 1064346 1064347 BURPS1710b_0230 BURPS1710b_0231 gspM gspN TRUE 0.895 39 23.791
 1064348 1064349 BURPS1710b_0232 BURPS1710b_0233 opmB FALSE 0.196 222 1.448
 1064350 1064351 BURPS1710b_0234 BURPS1710b_0235 marR bcrA TRUE 0.724 148 -0.678
 1064353 1064354 BURPS1710b_0237 BURPS1710b_0238 TRUE 0.933 30 56.36
 1064354 1064355 BURPS1710b_0238 BURPS1710b_0239 fliL FALSE 0.005 774 -15.65
 1064355 1064356 BURPS1710b_0239 BURPS1710b_0240 fliL fliM TRUE 0.999 23 340.023
 1064356 1064357 BURPS1710b_0240 BURPS1710b_0241 fliM fliN TRUE 0.99 59 242.336
 1064357 1064358 BURPS1710b_0241 BURPS1710b_0242 fliN fliO TRUE 0.969 -3 3.981
 1064358 1064359 BURPS1710b_0242 BURPS1710b_0243 fliO fliP TRUE 0.987 2 7.568
 1064359 1064360 BURPS1710b_0243 BURPS1710b_0244 fliP fliQ TRUE 0.998 26 395.618
 1064363 1064364 BURPS1710b_0246 BURPS1710b_0248 FALSE 0.002 327 0
 1064365 1064366 BURPS1710b_0249 BURPS1710b_0250 FALSE 0.028 -7 -8.408
 1064366 1064367 BURPS1710b_0250 BURPS1710b_0251 FALSE 0.013 158 -2.726
 1064367 1064368 BURPS1710b_0251 BURPS1710b_0252 TRUE 0.994 15 59.003
 1064368 1064369 BURPS1710b_0252 BURPS1710b_0253 TRUE 0.995 28 161.006
 1064369 1064370 BURPS1710b_0253 BURPS1710b_0254 TRUE 0.682 78 8.002
 1064370 1064371 BURPS1710b_0254 BURPS1710b_0255 TRUE 0.97 11 3.452
 1064371 1064372 BURPS1710b_0255 BURPS1710b_0257 FALSE 0.223 40 0.188
 1064374 1064375 BURPS1710b_0256 BURPS1710b_0259 mod FALSE 0.002 455 -3.457
 1064375 1064376 BURPS1710b_0259 BURPS1710b_0260 mod res TRUE 0.972 41 35.233
 1064376 1064377 BURPS1710b_0260 BURPS1710b_0262 res FALSE 0.001 420 0
 1064377 1064378 BURPS1710b_0262 BURPS1710b_0261 omp38 FALSE 0 -1218 0
 1064378 1064379 BURPS1710b_0261 BURPS1710b_0263 omp38 FALSE 0.019 400 -6.594
 1064382 1064383 BURPS1710b_0266 BURPS1710b_0267 TRUE 0.945 -3 0.384
 1064383 1064384 BURPS1710b_0267 BURPS1710b_0268 TRUE 0.957 -3 0.384
 1064388 1064389 BURPS1710b_0272 BURPS1710b_0273 FALSE 0.333 56 -1.448
 1064389 1064390 BURPS1710b_0273 BURPS1710b_0275 FALSE 0.005 -96 0
 1064390 1064391 BURPS1710b_0275 BURPS1710b_0274 FALSE 0.001 -889 0
 1064391 1064392 BURPS1710b_0274 BURPS1710b_0276 FALSE 0.423 46 0.401
 1064392 1064393 BURPS1710b_0276 BURPS1710b_0277 FALSE 0.003 -196 0
 1064393 1064394 BURPS1710b_0277 BURPS1710b_0278 FALSE 0.002 -1473 0.188
 1064398 1064399 BURPS1710b_0282 BURPS1710b_0283 FALSE 0.002 -606 0
 1064399 1064400 BURPS1710b_0283 BURPS1710b_0284 FALSE 0.091 440 0.243