VIMSS Operon Predictions for Burkholderia pseudomallei 1655

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 2361509 2361510 Bpse1_03000001 Bpse1_03000002 TRUE 0.996 -3 113.696
 2361511 2361512 Bpse1_03000003 Bpse1_03000004 TRUE 0.951 35 184.275
 2361512 2361513 Bpse1_03000004 Bpse1_03000005 FALSE 0.003 260 -37.275
 2361513 2361514 Bpse1_03000005 Bpse1_03000006 TRUE 0.998 7 222.618
 2361514 2361515 Bpse1_03000006 Bpse1_03000007 TRUE 0.993 102 220.12
 2361515 2361516 Bpse1_03000007 Bpse1_03000008 TRUE 0.887 65 -10.466
 2361517 2361518 Bpse1_03000009 Bpse1_03000010 FALSE 0.103 112 -12.087
 2361519 2361520 Bpse1_03000011 Bpse1_03000012 FALSE 0 410 -22.643
 2361520 2361521 Bpse1_03000012 Bpse1_03000013 TRUE 0.951 80 140.3
 2361521 2361522 Bpse1_03000013 Bpse1_03000014 TRUE 0.936 103 103.289
 2361524 2361525 Bpse1_03000016 Bpse1_03000017 TRUE 0.988 30 251.857
 2361526 2361527 Bpse1_03000018 Bpse1_03000019 FALSE 0.475 209 -13.284
 2361527 2361528 Bpse1_03000019 Bpse1_03000020 TRUE 0.914 6 -21.619
 2361528 2361529 Bpse1_03000020 Bpse1_03000021 FALSE 0 496 -22.681
 2361529 2361530 Bpse1_03000021 Bpse1_03000022 TRUE 0.931 16 9.179
 2361530 2361531 Bpse1_03000022 Bpse1_03000023 TRUE 0.571 146 2.138
 2361531 2361532 Bpse1_03000023 Bpse1_03000024 TRUE 0.886 267 648.787
 2361532 2361533 Bpse1_03000024 Bpse1_03000025 TRUE 0.714 109 -17.248
 2361534 2361535 Bpse1_03000026 Bpse1_03000027 TRUE 0.925 122 26.972
 2361535 2361536 Bpse1_03000027 Bpse1_03000028 TRUE 0.967 -3 10.562
 2361536 2361537 Bpse1_03000028 Bpse1_03000029 TRUE 0.982 58 269.697
 2361537 2361538 Bpse1_03000029 Bpse1_03000030 TRUE 0.964 -3 11.993
 2361538 2361539 Bpse1_03000030 Bpse1_03000031 TRUE 0.942 97 27.819
 2361540 2361541 Bpse1_03000032 Bpse1_03000033 FALSE 0.012 189 -7.788
 2361542 2361543 Bpse1_03000034 Bpse1_03000035 TRUE 0.982 -3 218.325
 2361545 2361546 Bpse1_03000037 Bpse1_03000038 FALSE 0.031 111 -19.218
 2361546 2361547 Bpse1_03000038 Bpse1_03000039 FALSE 0.003 250 -12.828
 2361547 2361548 Bpse1_03000039 Bpse1_03000040 FALSE 0.018 453 0.808
 2361548 2361549 Bpse1_03000040 Bpse1_03000041 FALSE 0 595 0.439
 2361550 2361551 Bpse1_03000042 Bpse1_03000043 FALSE 0 3631 -32.767
 2361551 2361552 Bpse1_03000043 Bpse1_03000044 TRUE 0.908 55 0.583
 2361552 2361553 Bpse1_03000044 Bpse1_03000045 FALSE 0.142 228 0.421
 2361553 2361554 Bpse1_03000045 Bpse1_03000046 FALSE 0.36 170 0.421
 2361554 2361555 Bpse1_03000046 Bpse1_03000047 FALSE 0.001 1823 0
 2361555 2361556 Bpse1_03000047 Bpse1_03000048 TRUE 0.6 -3 0
 2361556 2361557 Bpse1_03000048 Bpse1_03000049 FALSE 0.006 1801 -0.121
 2361557 2361558 Bpse1_03000049 Bpse1_03000050 TRUE 0.966 -72 0
 2361558 2361559 Bpse1_03000050 Bpse1_03000051 TRUE 0.55 -3 0
 2361559 2361560 Bpse1_03000051 Bpse1_03000052 TRUE 0.816 65 1.732
 2361560 2361561 Bpse1_03000052 Bpse1_03000053 TRUE 0.859 9 1.612
 2361562 2361563 Bpse1_03000054 Bpse1_03000055 TRUE 0.788 57 0.788
 2361563 2361564 Bpse1_03000055 Bpse1_03000056 FALSE 0.001 341 0.788
 2361565 2361566 Bpse1_03000057 Bpse1_03000058 FALSE 0.002 271 0.788
 2361566 2361567 Bpse1_03000058 Bpse1_03000059 TRUE 0.864 135 0.788
 2361567 2361568 Bpse1_03000059 Bpse1_03000060 TRUE 0.96 -3 13.523
 2361568 2361569 Bpse1_03000060 Bpse1_03000061 TRUE 0.964 42 40.97
 2361569 2361570 Bpse1_03000061 Bpse1_03000062 FALSE 0.474 61 -0.427
 2361570 2361571 Bpse1_03000062 Bpse1_03000063 TRUE 0.948 33 1.183
 2361571 2361572 Bpse1_03000063 Bpse1_03000064 TRUE 0.843 2 1.183
 2361572 2361573 Bpse1_03000064 Bpse1_03000065 TRUE 0.833 -3 1.183
 2361573 2361574 Bpse1_03000065 Bpse1_03000066 TRUE 0.947 -3 0.547
 2361574 2361575 Bpse1_03000066 Bpse1_03000067 TRUE 0.828 85 -1.427
 2361575 2361576 Bpse1_03000067 Bpse1_03000068 TRUE 0.944 -3 0.352
 2361576 2361577 Bpse1_03000068 Bpse1_03000069 TRUE 0.693 103 15.432
 2361580 2361581 Bpse1_03000072 Bpse1_03000073 TRUE 0.986 20 249.472
 2361581 2361582 Bpse1_03000073 Bpse1_03000074 TRUE 0.986 18 327.88
 2361582 2361583 Bpse1_03000074 Bpse1_03000075 TRUE 0.938 133 101.412
 2361583 2361584 Bpse1_03000075 Bpse1_03000076 TRUE 0.984 -3 65.934
 2361584 2361585 Bpse1_03000076 Bpse1_03000077 TRUE 0.994 65 160.868
 2361585 2361586 Bpse1_03000077 Bpse1_03000078 TRUE 0.926 177 284.928
 2361586 2361587 Bpse1_03000078 Bpse1_03000079 TRUE 0.758 106 -16.008
 2361588 2361589 Bpse1_03000080 Bpse1_03000081 TRUE 0.985 7 69.631
 2361589 2361590 Bpse1_03000081 Bpse1_03000082 FALSE 0 761 0.298
 2361590 2361591 Bpse1_03000082 Bpse1_03000083 TRUE 0.732 -3 0.298
 2361591 2361592 Bpse1_03000083 Bpse1_03000084 TRUE 0.736 93 1.411
 2361592 2361593 Bpse1_03000084 Bpse1_03000085 TRUE 0.793 71 1.42
 2361594 2361595 Bpse1_03000086 Bpse1_03000087 TRUE 0.846 104 6.676
 2361595 2361596 Bpse1_03000087 Bpse1_03000088 TRUE 0.909 124 123.481
 2361599 2361600 Bpse1_03000091 Bpse1_03000092 FALSE 0.001 368 -1.226
 2361602 2361603 Bpse1_03000095 Bpse1_03000096 TRUE 0.972 20 61.441
 2361603 2361604 Bpse1_03000096 Bpse1_03000097 TRUE 0.956 43 35.934
 2361604 2361605 Bpse1_03000097 Bpse1_03000098 TRUE 0.877 -3 1.717
 2361605 2361606 Bpse1_03000098 Bpse1_03000099 TRUE 0.901 25 0.375
 2361606 2361607 Bpse1_03000099 Bpse1_03000100 TRUE 0.994 -3 114.819
 2361608 2361609 Bpse1_03000101 Bpse1_03000102 FALSE 0.25 272 2.002
 2361609 2361610 Bpse1_03000102 Bpse1_03000103 FALSE 0.096 182 -0.108
 2361610 2361611 Bpse1_03000103 Bpse1_03000104 FALSE 0.01 557 -10.577
 2361611 2361612 Bpse1_03000104 Bpse1_03000105 TRUE 0.856 47 2.229
 2361617 2361618 Bpse1_03000110 Bpse1_03000111 TRUE 0.998 29 185.102
 2361618 2361619 Bpse1_03000111 Bpse1_03000112 FALSE 0 391 -2.892
 2361619 2361620 Bpse1_03000112 Bpse1_03000113 FALSE 0.364 185 0.544
 2361620 2361621 Bpse1_03000113 Bpse1_03000114 FALSE 0 665 -6.11
 2361621 2361622 Bpse1_03000114 Bpse1_03000115 TRUE 0.959 36 24.585
 2361622 2361623 Bpse1_03000115 Bpse1_03000116 TRUE 0.783 229 47.705
 2361623 2361624 Bpse1_03000116 Bpse1_03000117 TRUE 0.986 54 77.443
 2361625 2361626 Bpse1_03000118 Bpse1_03000119 TRUE 0.842 74 2.888
 2361626 2361627 Bpse1_03000119 Bpse1_03000120 FALSE 0.127 98 -3.93
 2361628 2361629 Bpse1_03000121 Bpse1_03000122 TRUE 0.704 120 1.736
 2361629 2361630 Bpse1_03000122 Bpse1_03000123 FALSE 0 606 -2.109
 2361631 2361632 Bpse1_03000124 Bpse1_03000125 FALSE 0 491 -6.344
 2361632 2361633 Bpse1_03000125 Bpse1_03000126 FALSE 0.242 130 -3.46
 2361633 2361634 Bpse1_03000126 Bpse1_03000127 FALSE 0 455 0.563
 2361634 2361635 Bpse1_03000127 Bpse1_03000128 FALSE 0.001 350 0.277
 2361635 2361636 Bpse1_03000128 Bpse1_03000129 TRUE 0.959 -3 38.404
 2361636 2361637 Bpse1_03000129 Bpse1_03000130 FALSE 0.41 182 0.573
 2361638 2361639 Bpse1_03000131 Bpse1_03000132 FALSE 0 779 -4.238
 2361639 2361640 Bpse1_03000132 Bpse1_03000133 TRUE 0.779 93 2.142
 2361640 2361641 Bpse1_03000133 Bpse1_03000134 TRUE 0.821 78 2.276
 2361641 2361642 Bpse1_03000134 Bpse1_03000135 FALSE 0.118 263 0.649
 2361642 2361643 Bpse1_03000135 Bpse1_03000136 FALSE 0 490 0.649
 2361645 2361646 Bpse1_03000138 Bpse1_03000139 FALSE 0 1211 -16.681
 2361646 2361647 Bpse1_03000139 Bpse1_03000140 FALSE 0 605 -7.899
 2361647 2361648 Bpse1_03000140 Bpse1_03000141 TRUE 0.993 93 54.733
 2361650 2361651 Bpse1_03000143 Bpse1_03000144 FALSE 0.457 206 2.682
 2361651 2361652 Bpse1_03000144 Bpse1_03000145 TRUE 0.987 -3 299.745
 2361652 2361653 Bpse1_03000145 Bpse1_03000146 TRUE 0.981 -13 58.733
 2361653 2361654 Bpse1_03000146 Bpse1_03000147 TRUE 0.991 81 99.113
 2361654 2361655 Bpse1_03000147 Bpse1_03000148 TRUE 0.992 92 469.423
 2361655 2361656 Bpse1_03000148 Bpse1_03000149 TRUE 0.945 15 9.537
 2361658 2361659 Bpse1_03000151 Bpse1_03000152 TRUE 0.992 12 442.629
 2361659 2361660 Bpse1_03000152 Bpse1_03000153 FALSE 0.046 779 10.36
 2361660 2361661 Bpse1_03000153 Bpse1_03000154 TRUE 0.852 108 -0.405
 2361661 2361662 Bpse1_03000154 Bpse1_03000155 FALSE 0.003 2754 -76.59
 2361662 2361663 Bpse1_03000155 Bpse1_03000156 FALSE 0 636 0.272
 2361663 2361664 Bpse1_03000156 Bpse1_03000157 FALSE 0 1093 -16.068
 2361664 2361665 Bpse1_03000157 Bpse1_03000158 FALSE 0 3584 -16.068
 2361665 2361666 Bpse1_03000158 Bpse1_03000159 FALSE 0.001 1900 0
 2361667 2361668 Bpse1_03000160 Bpse1_03000161 TRUE 0.91 28 -40.595
 2361668 2361669 Bpse1_03000161 Bpse1_03000162 TRUE 0.971 15 -11.099
 2361669 2361670 Bpse1_03000162 Bpse1_03000163 TRUE 0.901 50 6.327
 2361670 2361671 Bpse1_03000163 Bpse1_03000164 TRUE 0.917 -3 1.291
 2361672 2361673 Bpse1_03000165 Bpse1_03000166 FALSE 0.492 199 -9.821
 2361673 2361674 Bpse1_03000166 Bpse1_03000167 FALSE 0.462 16 -2.128
 2361674 2361675 Bpse1_03000167 Bpse1_03000168 FALSE 0.402 38 -5.19
 2361676 2361677 Bpse1_03000169 Bpse1_03000170 TRUE 0.998 31 338.911
 2361677 2361678 Bpse1_03000170 Bpse1_03000171 TRUE 0.998 -13 161.206
 2361678 2361679 Bpse1_03000171 Bpse1_03000172 TRUE 0.991 18 113.246
 2361679 2361680 Bpse1_03000172 Bpse1_03000173 TRUE 0.995 101 271.919
 2361680 2361681 Bpse1_03000173 Bpse1_03000174 TRUE 0.983 90 284.953
 2361681 2361682 Bpse1_03000174 Bpse1_03000175 TRUE 0.716 222 158.541
 2361682 2361683 Bpse1_03000175 Bpse1_03000176 FALSE 0.232 242 37.362
 2361683 2361684 Bpse1_03000176 Bpse1_03000177 TRUE 0.985 5 258.966
 2361684 2361685 Bpse1_03000177 Bpse1_03000178 TRUE 0.987 -3 258.603
 2361685 2361686 Bpse1_03000178 Bpse1_03000179 TRUE 0.996 2 173.475
 2361686 2361687 Bpse1_03000179 Bpse1_03000180 TRUE 0.985 96 171.237
 2361689 2361690 Bpse1_03000182 Bpse1_03000183 TRUE 0.967 15 31.001
 2361690 2361691 Bpse1_03000183 Bpse1_03000184 FALSE 0.027 134 -9.276
 2361691 2361692 Bpse1_03000184 Bpse1_03000185 TRUE 0.797 82 1.835
 2361693 2361694 Bpse1_03000186 Bpse1_03000187 TRUE 0.867 77 4.072
 2361696 2361697 Bpse1_03000189 Bpse1_03000190 FALSE 0.104 250 0.463
 2361699 2361700 Bpse1_03000192 Bpse1_03000193 TRUE 0.916 24 22.96
 2361701 2361702 Bpse1_03000194 Bpse1_03000195 FALSE 0.298 83 1.298
 2361703 2361704 Bpse1_03000196 Bpse1_03000197 FALSE 0.223 192 0.192
 2361705 2361706 Bpse1_03000198 Bpse1_03000199 TRUE 0.819 62 -6.656
 2361708 2361709 Bpse1_03000201 Bpse1_03000202 TRUE 0.9 65 -47.431
 2361709 2361710 Bpse1_03000202 Bpse1_03000203 TRUE 0.989 -3 463.659
 2361710 2361711 Bpse1_03000203 Bpse1_03000204 TRUE 0.998 80 464.271
 2361711 2361712 Bpse1_03000204 Bpse1_03000205 FALSE 0.1 463 408.506
 2361712 2361713 Bpse1_03000205 Bpse1_03000206 TRUE 0.995 15 411.51
 2361713 2361714 Bpse1_03000206 Bpse1_03000207 TRUE 0.899 29 -83.34
 2361714 2361715 Bpse1_03000207 Bpse1_03000208 FALSE 0 454 1.972
 2361715 2361716 Bpse1_03000208 Bpse1_03000209 TRUE 0.676 100 0.729
 2361718 2361719 Bpse1_03000211 Bpse1_03000212 FALSE 0.387 78 -0.196
 2361719 2361720 Bpse1_03000212 Bpse1_03000213 TRUE 0.908 71 -0.503
 2361720 2361721 Bpse1_03000213 Bpse1_03000214 TRUE 0.971 47 0.083
 2361721 2361722 Bpse1_03000214 Bpse1_03000215 TRUE 0.964 86 40.224
 2361722 2361723 Bpse1_03000215 Bpse1_03000216 FALSE 0 476 -4.192
 2361723 2361724 Bpse1_03000216 Bpse1_03000217 TRUE 0.966 41 2.92
 2361724 2361725 Bpse1_03000217 Bpse1_03000218 TRUE 0.988 88 301.057
 2361726 2361727 Bpse1_03000219 Bpse1_03000220 TRUE 0.837 253 136.552
 2361727 2361728 Bpse1_03000220 Bpse1_03000221 TRUE 0.995 2 145.691
 2361728 2361729 Bpse1_03000221 Bpse1_03000222 TRUE 0.971 125 93.295
 2361730 2361731 Bpse1_03000223 Bpse1_03000224 TRUE 0.917 26 4.399
 2361731 2361732 Bpse1_03000224 Bpse1_03000225 TRUE 0.779 166 10.382
 2361733 2361734 Bpse1_03000226 Bpse1_03000227 TRUE 0.979 58 89.908
 2361734 2361735 Bpse1_03000227 Bpse1_03000228 TRUE 0.557 198 201.346
 2361739 2361740 Bpse1_03000232 Bpse1_03000233 FALSE 0.455 208 2.759
 2361740 2361741 Bpse1_03000233 Bpse1_03000234 TRUE 0.991 74 186.643
 2361741 2361742 Bpse1_03000234 Bpse1_03000235 TRUE 0.996 13 396.728
 2361742 2361743 Bpse1_03000235 Bpse1_03000236 FALSE 0.084 194 0.74
 2361746 2361747 Bpse1_03000240 Bpse1_03000241 TRUE 0.525 181 1.735
 2361747 2361748 Bpse1_03000241 Bpse1_03000242 FALSE 0 429 2.032
 2361748 2361749 Bpse1_03000242 Bpse1_03000243 FALSE 0 1960 -85.873
 2361749 2361750 Bpse1_03000243 Bpse1_03000244 TRUE 0.988 -3 378.302
 2361750 2361751 Bpse1_03000244 Bpse1_03000245 TRUE 0.988 -3 363.246
 2361752 2361753 Bpse1_03000246 Bpse1_03000247 TRUE 0.987 7 384.447
 2361753 2361754 Bpse1_03000247 Bpse1_03000248 TRUE 0.984 61 117.668
 2361754 2361755 Bpse1_03000248 Bpse1_03000249 TRUE 0.992 67 80.873
 2361755 2361756 Bpse1_03000249 Bpse1_03000250 FALSE 0.015 538 -23.297
 2361758 2361759 Bpse1_03000252 Bpse1_03000253 FALSE 0.246 156 0
 2361760 2361761 Bpse1_03000254 Bpse1_03000255 FALSE 0.001 1457 0
 2361761 2361762 Bpse1_03000255 Bpse1_03000256 TRUE 0.66 16 0.201
 2361762 2361763 Bpse1_03000256