VIMSS Operon Predictions for Burkholderia cenocepacia AU 1054

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 1883677 1883678 Bcen_0001 Bcen_0002 TRUE 0.986 15 24.372
 1883678 1883679 Bcen_0002 Bcen_0003 FALSE 0.467 44 0.075
 1883679 1883680 Bcen_0003 Bcen_0004 FALSE 0.002 302 0.075
 1883682 1883683 Bcen_0006 Bcen_0007 FALSE 0.028 55 4.662
 1883684 1883685 Bcen_0008 Bcen_0009 TRUE 0.999 -3 181.021
 1883685 1883686 Bcen_0009 Bcen_0010 TRUE 0.999 5 392.181
 1883688 1883689 Bcen_0012 Bcen_0013 TRUE 0.993 40 17.997
 1883689 1883690 Bcen_0013 Bcen_0014 TRUE 0.998 3 22.857
 1883690 1883691 Bcen_0014 Bcen_0015 TRUE 0.991 8 6.612
 1883691 1883692 Bcen_0015 Bcen_0016 TRUE 0.993 3 10.331
 1883692 1883693 Bcen_0016 Bcen_0017 TRUE 0.964 27 20.497
 1883693 1883694 Bcen_0017 Bcen_0018 TRUE 0.983 -3 13.35
 1883694 1883695 Bcen_0018 Bcen_0019 TRUE 0.978 1 11.54
 1883696 1883697 Bcen_0020 Bcen_0021 FALSE 0.036 282 3.608
 1883698 1883699 Bcen_0022 Bcen_0023 FALSE 0.243 177 -0.651
 1883699 1883700 Bcen_0023 Bcen_0024 FALSE 0.079 106 -4.627
 1883700 1883701 Bcen_0024 Bcen_0025 TRUE 0.988 -3 48.216
 1883703 1883704 Bcen_0027 Bcen_0028 TRUE 0.99 14 66.199
 1883704 1883705 Bcen_0028 Bcen_0029 FALSE 0.001 213 -15.86
 1883705 1883706 Bcen_0029 Bcen_0030 TRUE 0.999 23 290.373
 1883706 1883707 Bcen_0030 Bcen_0031 TRUE 0.999 -7 219.966
 1883707 1883708 Bcen_0031 Bcen_0032 TRUE 0.991 -3 18.158
 1883708 1883709 Bcen_0032 Bcen_0033 TRUE 0.951 37 16.824
 1883709 1883710 Bcen_0033 Bcen_0034 TRUE 0.999 18 414.128
 1883710 1883711 Bcen_0034 Bcen_0035 TRUE 0.999 25 483.513
 1883711 1883712 Bcen_0035 Bcen_0036 FALSE 0.002 186 -40.675
 1883712 1883713 Bcen_0036 Bcen_0037 TRUE 0.948 122 48.979
 1883713 1883714 Bcen_0037 Bcen_0038 TRUE 0.988 60 95.894
 1883714 1883715 Bcen_0038 Bcen_0039 FALSE 0.147 89 1.33
 1883715 1883716 Bcen_0039 Bcen_0040 TRUE 0.987 14 5.489
 1883716 1883717 Bcen_0040 Bcen_0041 FALSE 0.012 103 0.816
 1883717 1883718 Bcen_0041 Bcen_0042 FALSE 0 360 -1.361
 1883718 1883719 Bcen_0042 Bcen_0043 TRUE 0.995 0 40.31
 1883720 1883721 Bcen_0044 Bcen_0045 FALSE 0.034 188 0
 1883721 1883722 Bcen_0045 Bcen_0046 FALSE 0.305 53 0
 1883722 1883723 Bcen_0046 Bcen_0047 FALSE 0.003 294 0.38
 1883723 1883724 Bcen_0047 Bcen_0048 TRUE 0.993 -16 309.081
 1883724 1883725 Bcen_0048 Bcen_0049 TRUE 0.853 5 0.076
 1883726 1883727 Bcen_0050 Bcen_0051 TRUE 0.984 0 18.965
 1883728 1396742 Bcen_0052 Bcen_R0001 FALSE 0.004 322 0
 1396743 1883729 Bcen_0053 Bcen_0054 FALSE 0.233 72 0
 1883729 1883730 Bcen_0054 Bcen_0055 TRUE 0.525 32 0.005
 1883730 1883731 Bcen_0055 Bcen_0056 TRUE 0.73 19 0.026
 1883731 1883732 Bcen_0056 Bcen_0057 FALSE 0.053 183 0.026
 1883733 1883734 Bcen_0058 Bcen_0059 FALSE 0.001 377 0.005
 1883734 1883735 Bcen_0059 Bcen_0060 TRUE 0.995 -3 31.01
 1883736 1883737 Bcen_0061 Bcen_0062 TRUE 0.98 0 20.518
 1883737 1396753 Bcen_0062 Bcen_R0002 FALSE 0.001 587 0
 1396753 1396754 Bcen_R0002 Bcen_R0003 FALSE 0.002 391 0
 1396754 1396755 Bcen_R0003 Bcen_R0004 FALSE 0.075 152 0
 1396755 1883738 Bcen_R0004 Bcen_0063 FALSE 0.003 377 0
 1883738 1883739 Bcen_0063 Bcen_0064 FALSE 0.007 138 -10.707
 1883739 1883740 Bcen_0064 Bcen_0065 FALSE 0.247 79 0.005
 1883742 1883743 Bcen_0067 Bcen_0068 FALSE 0 387 -8.9
 1883743 1883744 Bcen_0068 Bcen_0069 TRUE 0.997 24 918.437
 1883744 1883745 Bcen_0069 Bcen_0070 TRUE 0.99 -3 34.307
 1883745 1883746 Bcen_0070 Bcen_0071 TRUE 0.992 -3 27.222
 1883746 1883747 Bcen_0071 Bcen_0072 TRUE 0.999 -3 316.643
 1883747 1883748 Bcen_0072 Bcen_0073 TRUE 1 -3 796.951
 1883748 1883749 Bcen_0073 Bcen_0074 TRUE 0.999 17 867.077
 1883749 1883750 Bcen_0074 Bcen_0075 TRUE 0.999 29 994.307
 1883750 1883751 Bcen_0075 Bcen_0076 TRUE 0.998 -3 757.155
 1883751 1883752 Bcen_0076 Bcen_0077 TRUE 0.999 -3 870.275
 1883752 1883753 Bcen_0077 Bcen_0078 TRUE 0.999 -3 820.031
 1883753 1883754 Bcen_0078 Bcen_0079 TRUE 1 2 308.355
 1883754 1883755 Bcen_0079 Bcen_0080 TRUE 0.998 20 230.983
 1883755 1883756 Bcen_0080 Bcen_0081 TRUE 0.993 27 297.305
 1883756 1883757 Bcen_0081 Bcen_0082 TRUE 0.989 113 741.514
 1883757 1883758 Bcen_0082 Bcen_0083 FALSE 0.002 190 -2.814
 1883758 1883759 Bcen_0083 Bcen_0084 FALSE 0.038 241 -6.264
 1883759 1396778 Bcen_0084 Bcen_0085 FALSE 0.156 98 0
 1883761 1883762 Bcen_0087 Bcen_0088 TRUE 0.902 145 122.63
 1883762 1883763 Bcen_0088 Bcen_0089 TRUE 0.983 20 10.111
 1883763 1883764 Bcen_0089 Bcen_0090 TRUE 0.984 -3 14.944
 1883765 1883766 Bcen_0091 Bcen_0092 TRUE 0.969 29 128.06
 1883766 1883767 Bcen_0092 Bcen_0093 TRUE 0.907 110 191.276
 1883767 1883768 Bcen_0093 Bcen_0094 TRUE 0.997 2 166.344
 1883768 1883769 Bcen_0094 Bcen_0095 TRUE 0.992 45 164.401
 1883769 1883770 Bcen_0095 Bcen_0096 TRUE 0.992 -3 16.537
 1883770 1883771 Bcen_0096 Bcen_0097 TRUE 0.657 72 3.946
 1883771 1396791 Bcen_0097 Bcen_R0005 FALSE 0.281 60 0
 1396791 1883772 Bcen_R0005 Bcen_0098 FALSE 0.08 149 0
 1883773 1883774 Bcen_0099 Bcen_0100 TRUE 0.999 25 1258.18
 1883774 1883775 Bcen_0100 Bcen_0101 TRUE 0.871 187 595.613
 1883775 1883776 Bcen_0101 Bcen_0102 TRUE 0.975 90 304.208
 1883777 1883778 Bcen_0103 Bcen_0104 TRUE 0.955 14 6.518
 1883779 1883780 Bcen_0105 Bcen_0106 TRUE 0.635 22 -15.906
 1883781 1883782 Bcen_0107 Bcen_0108 TRUE 0.649 95 -34.054
 1883783 1883784 Bcen_0109 Bcen_0110 TRUE 0.965 14 4.623
 1883784 1883785 Bcen_0110 Bcen_0111 TRUE 0.697 -3 -3.889
 1883785 1883786 Bcen_0111 Bcen_0112 FALSE 0 453 3.7
 1883786 1883787 Bcen_0112 Bcen_0113 FALSE 0.21 429 267.031
 1883787 1883788 Bcen_0113 Bcen_0114 FALSE 0.388 83 0.511
 1883788 1883789 Bcen_0114 Bcen_0115 TRUE 0.731 29 0.511
 1883790 1883791 Bcen_0116 Bcen_0117 TRUE 0.947 20 12.764
 1883791 1883792 Bcen_0117 Bcen_0118 TRUE 0.736 86 1.322
 1883792 1883793 Bcen_0118 Bcen_0119 TRUE 0.708 72 0.935
 1883793 1883794 Bcen_0119 Bcen_0120 TRUE 0.945 46 45.54
 1883794 1883795 Bcen_0120 Bcen_0121 TRUE 0.997 3 74.651
 1883795 1883796 Bcen_0121 Bcen_0122 TRUE 0.996 88 978.414
 1883796 1883797 Bcen_0122 Bcen_0123 TRUE 0.968 67 221.397
 1883797 1883798 Bcen_0123 Bcen_0124 FALSE 0.372 195 12.481
 1883801 1883802 Bcen_0127 Bcen_0128 TRUE 0.975 -3 -8.928
 1883802 1883803 Bcen_0128 Bcen_0129 TRUE 0.681 81 11.96
 1883803 1883804 Bcen_0129 Bcen_0130 FALSE 0.191 -3 17.56
 1883804 1883805 Bcen_0130 Bcen_0131 TRUE 0.985 15 21.314
 1883805 1883806 Bcen_0131 Bcen_0132 FALSE 0 424 2.986
 1883806 1883807 Bcen_0132 Bcen_0133 TRUE 0.607 80 3.645
 1883807 1883808 Bcen_0133 Bcen_0134 FALSE 0.006 152 3.588
 1883808 1883809 Bcen_0134 Bcen_0135 TRUE 0.957 -3 4.698
 1883809 1883810 Bcen_0135 Bcen_0136 TRUE 0.994 23 119.223
 1883810 1883811 Bcen_0136 Bcen_0137 TRUE 0.966 -3 2.98
 1883811 1883812 Bcen_0137 Bcen_0138 FALSE 0.426 112 2.51
 1883812 1883813 Bcen_0138 Bcen_0139 TRUE 0.955 68 80.254
 1883813 1883814 Bcen_0139 Bcen_0140 TRUE 0.946 78 85.077
 1883814 1883815 Bcen_0140 Bcen_0141 TRUE 0.848 29 3.546
 1883815 1883816 Bcen_0141 Bcen_0142 FALSE 0.282 50 1.713
 1883816 1883817 Bcen_0142 Bcen_0143 TRUE 0.645 40 1.502
 1883817 1883818 Bcen_0143 Bcen_0144 FALSE 0.037 227 0.331
 1883819 1883820 Bcen_0145 Bcen_0146 TRUE 0.966 46 74.129
 1883820 1883821 Bcen_0146 Bcen_0147 TRUE 0.994 -10 256.284
 1883822 1883823 Bcen_0148 Bcen_0149 FALSE 0 376 7.339
 1883823 1883824 Bcen_0149 Bcen_0150 TRUE 0.959 17 7.6
 1883824 1883825 Bcen_0150 Bcen_0151 FALSE 0.01 209 0.057
 1883826 1883827 Bcen_0152 Bcen_0153 TRUE 0.973 -3 4.909
 1883827 1883828 Bcen_0153 Bcen_0154 TRUE 0.611 89 3.528
 1883829 1883830 Bcen_0155 Bcen_0156 TRUE 0.977 92 64.524
 1883832 1883833 Bcen_0158 Bcen_0159 TRUE 0.971 29 60.507
 1883837 1883838 Bcen_0163 Bcen_0164 FALSE 0.494 105 3.39
 1883838 1883839 Bcen_0164 Bcen_0165 TRUE 0.985 15 6.086
 1883841 1883842 Bcen_0167 Bcen_0168 TRUE 0.697 66 4.791
 1883842 1883843 Bcen_0168 Bcen_0169 TRUE 0.961 19 9.986
 1883843 1883844 Bcen_0169 Bcen_0170 TRUE 0.982 25 18.3
 1883844 1883845 Bcen_0170 Bcen_0171 FALSE 0.067 293 -0.583
 1883845 1883846 Bcen_0171 Bcen_0172 TRUE 0.958 60 157.747
 1883846 1883847 Bcen_0172 Bcen_0173 TRUE 0.989 19 159.749
 1883847 1883848 Bcen_0173 Bcen_0174 TRUE 0.761 135 6.394
 1883848 1883849 Bcen_0174 Bcen_0175 TRUE 0.856 24 -17.713
 1883851 1883852 Bcen_0177 Bcen_0178 TRUE 0.998 20 198.146
 1883852 1883853 Bcen_0178 Bcen_0179 FALSE 0.431 218 -0.259
 1883853 1883854 Bcen_0179 Bcen_0180 TRUE 0.997 14 119.938
 1883858 1883859 Bcen_0184 Bcen_0185 FALSE 0 287 3.77
 1883859 1883860 Bcen_0185 Bcen_0186 FALSE 0.044 262 -15.491
 1883860 1883861 Bcen_0186 Bcen_0187 TRUE 0.956 85 135.407
 1883861 1883862 Bcen_0187 Bcen_0188 TRUE 0.999 0 167.857
 1883862 1883863 Bcen_0188 Bcen_0189 TRUE 0.999 -3 167.906
 1883864 1883865 Bcen_0190 Bcen_0191 FALSE 0 586 0.324
 1883866 1883867 Bcen_0192 Bcen_0193 FALSE 0.004 159 7.884
 1883867 1396888 Bcen_0193 Bcen_R0006 rnpB FALSE 0.272 62 0
 1883868 1883869 Bcen_0194 Bcen_0195 FALSE 0 453 0.175
 1883870 1883871 Bcen_0196 Bcen_0197 TRUE 1 11 1360.359
 1883871 1883872 Bcen_0197 Bcen_0198 FALSE 0.022 229 -41.134
 1883874 1883875 Bcen_0200 Bcen_0201 TRUE 0.994 -3 -26.257
 1883875 1883876 Bcen_0201 Bcen_0202 FALSE 0.344 24 -16.371
 1883877 1883878 Bcen_0203 Bcen_0204 FALSE 0.305 146 3.187
 1883878 1883879 Bcen_0204 Bcen_0205 TRUE 0.881 24 -2.224
 1883879 1883880 Bcen_0205 Bcen_0206 TRUE 0.992 109 870.566
 1883880 1883881 Bcen_0206 Bcen_0207 TRUE 0.779 201 602.908
 1883881 1883882 Bcen_0207 Bcen_0208 FALSE 0.005 155 -33.191
 1883882 1883883 Bcen_0208 Bcen_0209 FALSE 0.251 275 52.709
 1883883 1883884 Bcen_0209 Bcen_0210 TRUE 0.633 138 -9.286
 1883884 1883885 Bcen_0210 Bcen_0211 TRUE 0.917 38 158.08
 1883887 1883888 Bcen_0213 Bcen_0214 FALSE 0.034 119 -8.05
 1883888 1883889 Bcen_0214 Bcen_0215 TRUE 0.992 -3 177.578
 1883890 1883891 Bcen_0216 Bcen_0217 TRUE 0.756 12 0
 1883891 1883892 Bcen_0217 Bcen_0218 TRUE 0.91 -3 3.178
 1883895 1883896 Bcen_0221 Bcen_0222 TRUE 0.577 74 51.108
 1883898 1883899 Bcen_0224 Bcen_0225 FALSE 0.295 155 -5.821
 1883899 1883900 Bcen_0225 Bcen_0226 FALSE 0 478 -7.353
 1883900 1883901 Bcen_0226 Bcen_0227 TRUE 0.996 -3 98.398
 1883901 1883902 Bcen_0227 Bcen_0228 TRUE 0.993 -7 41.913
 1883902 1883903 Bcen_0228 Bcen_0229 TRUE 0.995 -3 78.125
 1883904 1883905 Bcen_0230 Bcen_0231 TRUE 0.994 9 52.625
 1883905 1883906 Bcen_0231 Bcen_0232 TRUE 0.938 66 33.52
 1883906 1883907 Bcen_0232 Bcen_0233 FALSE 0.007 193 1.838
 1883908 1883909 Bcen_0234 Bcen_0235 FALSE 0 342 0.168
 1883909 1883910 Bcen_0235 Bcen_0236 TRUE 0.999 19 450.348
 1883910 1883911 Bcen_0236 Bcen_0237 TRUE 0.984 107 361.266
 1883911 1883912 Bcen_0237 Bcen_0238 FALSE 0.167 238 385.156
 1883912 1883913 Bcen_0238 Bcen_0239 TRUE 0.999 24 585.325
 1883914 1883915 Bcen_0240 Bcen_0241 TRUE 0.804 148 16.621
 1883915 1883916 Bcen_0241 Bcen_0242 FALSE 0.005 632 31.385
 1883916 1883917 Bcen_0242 Bcen_0243 FALSE 0.214 78 0
 1883917 1883918 Bcen_0243 Bcen_0244 TRUE 0.747 13 0
 1883918 1883919 Bcen_0244 Bcen_0245 FALSE 0.002 207 -54.721