VIMSS Operon Predictions for Burkholderia cenocepacia HI2424

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 1890154 1890155 Bcen2424_0001 Bcen2424_0002 TRUE 0.927 171 344.476
 1890155 1890156 Bcen2424_0002 Bcen2424_0003 TRUE 0.946 192 96.791
 1890156 1890157 Bcen2424_0003 Bcen2424_0004 FALSE 0.006 811 0
 1890157 1890158 Bcen2424_0004 Bcen2424_0005 TRUE 0.944 -7 0
 1890160 1890161 Bcen2424_0007 Bcen2424_0008 FALSE 0.413 39 0.003
 1403331 1403332 Bcen2424_R0001 Bcen2424_R0002 FALSE 0.072 154 0
 1403332 1403333 Bcen2424_R0002 Bcen2424_R0003 FALSE 0.002 392 0
 1403333 1890162 Bcen2424_R0003 Bcen2424_0009 FALSE 0.001 634 0
 1890162 1890163 Bcen2424_0009 Bcen2424_0010 TRUE 0.972 0 19.928
 1890164 1890165 Bcen2424_0011 Bcen2424_0012 TRUE 0.987 -3 22.228
 1890165 1890166 Bcen2424_0012 Bcen2424_0013 FALSE 0.001 317 0.003
 1890167 1890168 Bcen2424_0014 Bcen2424_0015 FALSE 0.051 183 0.023
 1890168 1890169 Bcen2424_0015 Bcen2424_0016 TRUE 0.683 19 0.023
 1890169 1890170 Bcen2424_0016 Bcen2424_0017 FALSE 0.49 32 0.003
 1403343 1890171 Bcen2424_R0004 Bcen2424_0018 FALSE 0.003 322 0
 1890172 1890173 Bcen2424_0019 Bcen2424_0020 TRUE 0.98 0 18.441
 1890174 1890175 Bcen2424_0021 Bcen2424_0022 TRUE 0.821 5 0.069
 1890175 1890176 Bcen2424_0022 Bcen2424_0023 TRUE 0.992 -16 303.519
 1890176 1890177 Bcen2424_0023 Bcen2424_0024 FALSE 0.002 294 0.361
 1890177 1890178 Bcen2424_0024 Bcen2424_0025 FALSE 0.284 53 0
 1890178 1890179 Bcen2424_0025 Bcen2424_0026 FALSE 0.032 188 0
 1890180 1890181 Bcen2424_0027 Bcen2424_0028 TRUE 0.994 0 40.107
 1890181 1890182 Bcen2424_0028 Bcen2424_0029 FALSE 0 360 -1.354
 1890182 1890183 Bcen2424_0029 Bcen2424_0030 FALSE 0 283 0.808
 1890183 1890184 Bcen2424_0030 Bcen2424_0031 TRUE 0.984 14 5.469
 1890184 1890185 Bcen2424_0031 Bcen2424_0032 FALSE 0.102 89 1.202
 1890185 1890186 Bcen2424_0032 Bcen2424_0033 TRUE 0.988 60 90.692
 1890186 1890187 Bcen2424_0033 Bcen2424_0034 TRUE 0.957 122 45.952
 1890187 1890188 Bcen2424_0034 Bcen2424_0035 FALSE 0.002 186 -40.695
 1890188 1890189 Bcen2424_0035 Bcen2424_0036 TRUE 0.999 25 477.337
 1890189 1890190 Bcen2424_0036 Bcen2424_0037 TRUE 0.999 18 409.279
 1890190 1890191 Bcen2424_0037 Bcen2424_0038 TRUE 0.948 37 16.466
 1890191 1890192 Bcen2424_0038 Bcen2424_0039 TRUE 0.989 -3 17.793
 1890192 1890193 Bcen2424_0039 Bcen2424_0040 TRUE 0.999 -7 218.977
 1890193 1890194 Bcen2424_0040 Bcen2424_0041 TRUE 0.999 23 287.199
 1890194 1890195 Bcen2424_0041 Bcen2424_0042 FALSE 0.001 213 -3.705
 1890195 1890196 Bcen2424_0042 Bcen2424_0043 TRUE 0.984 14 56.509
 1890198 1890199 Bcen2424_0045 Bcen2424_0046 TRUE 0.984 -3 47.3
 1890199 1890200 Bcen2424_0046 Bcen2424_0047 FALSE 0.079 106 -4.629
 1890200 1890201 Bcen2424_0047 Bcen2424_0048 FALSE 0.234 177 -0.823
 1890202 1890203 Bcen2424_0049 Bcen2424_0050 FALSE 0.035 282 3.597
 1890204 1890205 Bcen2424_0051 Bcen2424_0052 TRUE 0.971 1 11.575
 1890205 1890206 Bcen2424_0052 Bcen2424_0053 TRUE 0.978 -3 13.433
 1890206 1890207 Bcen2424_0053 Bcen2424_0054 TRUE 0.958 27 20.374
 1890207 1890208 Bcen2424_0054 Bcen2424_0055 TRUE 0.991 3 10.492
 1890208 1890209 Bcen2424_0055 Bcen2424_0056 TRUE 0.983 -22 6.823
 1890209 1890210 Bcen2424_0056 Bcen2424_0057 TRUE 0.998 3 22.387
 1890210 1890211 Bcen2424_0057 Bcen2424_0058 TRUE 0.994 40 16.795
 1890213 1890214 Bcen2424_0060 Bcen2424_0061 TRUE 0.999 5 384.67
 1890214 1890215 Bcen2424_0061 Bcen2424_0062 TRUE 0.999 -3 178.69
 1890216 1890217 Bcen2424_0063 Bcen2424_0064 FALSE 0.006 154 4.624
 1890219 1890220 Bcen2424_0066 Bcen2424_0067 FALSE 0.001 302 0.065
 1890220 1890221 Bcen2424_0067 Bcen2424_0068 FALSE 0.443 44 0.065
 1890221 1890222 Bcen2424_0068 Bcen2424_0069 TRUE 0.982 15 24.458
 1890222 1890223 Bcen2424_0069 Bcen2424_0070 FALSE 0 505 4.182
 1890223 1890224 Bcen2424_0070 Bcen2424_0071 TRUE 0.866 29 4.736
 1890224 1890225 Bcen2424_0071 Bcen2424_0072 FALSE 0.001 229 -0.99
 1890225 1890226 Bcen2424_0072 Bcen2424_0073 FALSE 0.003 178 0.429
 1890227 1890228 Bcen2424_0074 Bcen2424_0075 TRUE 0.842 122 7.353
 1890230 1890231 Bcen2424_0077 Bcen2424_0078 TRUE 0.56 132 22.481
 1890233 1890234 Bcen2424_0080 Bcen2424_0081 FALSE 0.002 209 0.208
 1890235 1890236 Bcen2424_0082 Bcen2424_0083 FALSE 0.01 434 0.094
 1890236 1890237 Bcen2424_0083 Bcen2424_0084 TRUE 0.999 -3 113.239
 1890237 1890238 Bcen2424_0084 Bcen2424_0085 TRUE 0.987 78 88.828
 1890238 1890239 Bcen2424_0085 Bcen2424_0086 TRUE 0.99 51 50.217
 1890239 1890240 Bcen2424_0086 Bcen2424_0087 TRUE 0.999 0 117.142
 1890240 1890241 Bcen2424_0087 Bcen2424_0088 FALSE 0.147 112 0
 1890241 1890242 Bcen2424_0088 Bcen2424_0089 FALSE 0.001 654 0
 1890242 1890243 Bcen2424_0089 Bcen2424_0090 TRUE 0.868 70 21.76
 1890243 1890244 Bcen2424_0090 Bcen2424_0091 TRUE 0.998 5 41.032
 1890244 1890245 Bcen2424_0091 Bcen2424_0092 TRUE 0.998 0 32.614
 1890245 1890246 Bcen2424_0092 Bcen2424_0093 FALSE 0 534 -4.196
 1890246 1890247 Bcen2424_0093 Bcen2424_0094 TRUE 0.998 -3 463.684
 1890247 1890248 Bcen2424_0094 Bcen2424_0095 TRUE 0.975 52 288.498
 1890248 1890249 Bcen2424_0095 Bcen2424_0096 TRUE 0.994 8 918.78
 1890249 1890250 Bcen2424_0096 Bcen2424_0097 TRUE 0.932 11 -0.232
 1890250 1890251 Bcen2424_0097 Bcen2424_0098 FALSE 0.127 135 0.003
 1890251 1890252 Bcen2424_0098 Bcen2424_0099 FALSE 0.171 115 0.003
 1890252 1890253 Bcen2424_0099 Bcen2424_0100 TRUE 0.891 111 19.122
 1890253 1890254 Bcen2424_0100 Bcen2424_0101 TRUE 0.997 76 767.007
 1890254 1890255 Bcen2424_0101 Bcen2424_0102 TRUE 0.994 130 716.471
 1890255 1890256 Bcen2424_0102 Bcen2424_0103 TRUE 1 3 879.471
 1890256 1890257 Bcen2424_0103 Bcen2424_0104 TRUE 0.999 45 1131.366
 1890257 1890258 Bcen2424_0104 Bcen2424_0105 TRUE 0.998 70 1459.481
 1890258 1890259 Bcen2424_0105 Bcen2424_0106 TRUE 0.998 67 1233.205
 1890259 1890260 Bcen2424_0106 Bcen2424_0107 TRUE 0.968 121 1162.814
 1890260 1890261 Bcen2424_0107 Bcen2424_0108 FALSE 0.001 264 -20.856
 1890262 1890263 Bcen2424_0109 Bcen2424_0110 TRUE 0.565 27 0.016
 1890264 1890265 Bcen2424_0111 Bcen2424_0112 FALSE 0 452 -10.834
 1890265 1890266 Bcen2424_0112 Bcen2424_0113 FALSE 0 427 -22.588
 1890266 1890267 Bcen2424_0113 Bcen2424_0114 TRUE 0.702 85 9.82
 1890268 1890269 Bcen2424_0115 Bcen2424_0116 FALSE 0.021 220 0.003
 1890269 1890270 Bcen2424_0116 Bcen2424_0117 TRUE 0.913 51 2.349
 1890271 1890272 Bcen2424_0118 Bcen2424_0119 FALSE 0.002 207 1.674
 1890272 1890273 Bcen2424_0119 Bcen2424_0120 TRUE 0.888 58 7.954
 1890273 1890274 Bcen2424_0120 Bcen2424_0121 TRUE 0.794 16 0.381
 1890275 1890276 Bcen2424_0122 Bcen2424_0123 TRUE 0.872 69 3.271
 1890277 1890278 Bcen2424_0124 Bcen2424_0125 TRUE 0.896 11 1.268
 1890280 1890281 Bcen2424_0127 Bcen2424_0128 FALSE 0.001 232 -37.877
 1890281 1890282 Bcen2424_0128 Bcen2424_0129 TRUE 0.88 101 58.34
 1890282 1890283 Bcen2424_0129 Bcen2424_0130 TRUE 1 -3 215.949
 1890287 1890288 Bcen2424_0134 Bcen2424_0135 FALSE 0.016 159 0.307
 1890288 1890289 Bcen2424_0135 Bcen2424_0136 FALSE 0.093 178 0.327
 1890290 1890291 Bcen2424_0137 Bcen2424_0138 TRUE 0.94 -3 3.555
 1890292 1890293 Bcen2424_0139 Bcen2424_0140 TRUE 0.953 -3 9.811
 1890293 1890294 Bcen2424_0140 Bcen2424_0141 FALSE 0.025 184 -0.543
 1890295 1890296 Bcen2424_0142 Bcen2424_0143 TRUE 0.868 31 4.736
 1890296 1890297 Bcen2424_0143 Bcen2424_0144 FALSE 0.283 155 3.148
 1890297 1890298 Bcen2424_0144 Bcen2424_0145 TRUE 0.944 62 415.414
 1890298 1890299 Bcen2424_0145 Bcen2424_0146 TRUE 0.995 127 588.83
 1890299 1890300 Bcen2424_0146 Bcen2424_0147 FALSE 0 384 -1.692
 1890300 1890301 Bcen2424_0147 Bcen2424_0148 FALSE 0.08 222 3.122
 1890301 1890302 Bcen2424_0148 Bcen2424_0149 FALSE 0 392 1.487
 1403478 1890305 Bcen2424_R0005 Bcen2424_0152 FALSE 0.004 311 0
 1890306 1890307 Bcen2424_0153 Bcen2424_0154 FALSE 0.005 284 0
 1890307 1890308 Bcen2424_0154 Bcen2424_0155 FALSE 0.47 16 0
 1890308 1890309 Bcen2424_0155 Bcen2424_0156 FALSE 0.011 207 -0.486
 1890310 1890311 Bcen2424_0157 Bcen2424_0158 TRUE 0.88 14 -0.313
 1890311 1890312 Bcen2424_0158 Bcen2424_0159 TRUE 0.944 2 1.433
 1890312 1890313 Bcen2424_0159 Bcen2424_0160 FALSE 0.226 54 -0.817
 1890313 1890314 Bcen2424_0160 Bcen2424_0161 TRUE 0.764 -3 -0.1
 1890314 1890315 Bcen2424_0161 Bcen2424_0162 FALSE 0.043 183 0.053
 1890315 1890316 Bcen2424_0162 Bcen2424_0163 FALSE 0.141 81 0
 1890317 1890318 Bcen2424_0164 Bcen2424_0165 FALSE 0.013 197 -0.147
 1890318 1890319 Bcen2424_0165 Bcen2424_0166 FALSE 0.342 26 0
 1890319 1890320 Bcen2424_0166 Bcen2424_0167 FALSE 0.239 37 -0.08
 1890322 1890323 Bcen2424_0169 Bcen2424_0170 FALSE 0.152 107 0
 1890323 1890324 Bcen2424_0170 Bcen2424_0171 FALSE 0.136 119 0
 1890325 1890326 Bcen2424_0172 Bcen2424_0173 TRUE 0.893 -3 4.009
 1890326 1890327 Bcen2424_0173 Bcen2424_0174 FALSE 0.175 106 -0.303
 1890327 1890328 Bcen2424_0174 Bcen2424_0175 TRUE 0.844 37 0
 1890328 1890329 Bcen2424_0175 Bcen2424_0176 TRUE 0.844 -3 -0.038
 1890329 1890330 Bcen2424_0176 Bcen2424_0177 TRUE 0.971 -3 -1.439
 1890332 1890333 Bcen2424_0179 Bcen2424_0180 FALSE 0.17 110 -0.342
 1890333 1890334 Bcen2424_0180 Bcen2424_0181 FALSE 0.089 34 -1.737
 1890334 1890335 Bcen2424_0181 Bcen2424_0182 FALSE 0.079 113 0
 1890337 1890338 Bcen2424_0184 Bcen2424_0185 FALSE 0.001 1819 0
 1890338 1890339 Bcen2424_0185 Bcen2424_0186 FALSE 0.018 218 0
 1890339 1890340 Bcen2424_0186 Bcen2424_0187 FALSE 0.023 203 0
 1890340 1890341 Bcen2424_0187 Bcen2424_0188 TRUE 0.674 -3 1.338
 1890341 1890342 Bcen2424_0188 Bcen2424_0189 FALSE 0.001 1141 0
 1890342 1890343 Bcen2424_0189 Bcen2424_0190 FALSE 0.011 239 0
 1890343 1890344 Bcen2424_0190 Bcen2424_0191 TRUE 0.688 13 0
 1890345 1890346 Bcen2424_0192 Bcen2424_0193 TRUE 0.666 -16 4.732
 1890346 1890347 Bcen2424_0193 Bcen2424_0194 TRUE 0.871 -3 6.208
 1890349 1890350 Bcen2424_0196 Bcen2424_0197 FALSE 0.094 141 0
 1890352 1890353 Bcen2424_0199 Bcen2424_0200 TRUE 0.734 2 0
 1890353 1890354 Bcen2424_0200 Bcen2424_0201 TRUE 0.718 -3 0
 1890354 1890355 Bcen2424_0201 Bcen2424_0202 FALSE 0.001 470 0
 1890355 1890356 Bcen2424_0202 Bcen2424_0203 TRUE 0.591 -3 -2.028
 1890356 1890357 Bcen2424_0203 Bcen2424_0204 TRUE 0.588 64 11.279
 1890357 1890358 Bcen2424_0204 Bcen2424_0205 TRUE 0.682 75 10.625
 1890359 1890360 Bcen2424_0206 Bcen2424_0207 TRUE 0.973 -7 14.204
 1890360 1890361 Bcen2424_0207 Bcen2424_0208 TRUE 0.652 15 0
 1890362 1890363 Bcen2424_0209 Bcen2424_0210 FALSE 0.007 272 0
 1890363 1890364 Bcen2424_0210 Bcen2424_0211 TRUE 0.893 6 0.874
 1890364 1890365 Bcen2424_0211 Bcen2424_0212 TRUE 0.96 1 0.925
 1890365 1890366 Bcen2424_0212 Bcen2424_0213 FALSE 0 1421 -9.781
 1890366 1890367 Bcen2424_0213 Bcen2424_0214 TRUE 0.81 9 0.065
 1890368 1890369 Bcen2424_0215 Bcen2424_0216 FALSE 0.001 285 0.003
 1890369 1890370 Bcen2424_0216 Bcen2424_0217 FALSE 0 658 0.003
 1890372 1890373 Bcen2424_0219 Bcen2424_0220 TRUE 0.718 -3 0
 1890373 1890374 Bcen2424_0220 Bcen2424_0221 TRUE 0.925 2 6.809
 1890375 1890376 Bcen2424_0222 Bcen2424_0223 TRUE 0.818 54 14.954
 1890376 1890377 Bcen2424_0223 Bcen2424_0224 FALSE 0.015 236 0.003
 1890380 1890381 Bcen2424_0227 Bcen2424_0228 TRUE 0.819 5 0.065
 1890381 1890382 Bcen2424_0228 Bcen2424_0229 TRUE 0.811 -3 0.065
 1890384 1890385 Bcen2424_0231 Bcen2424_0232 FALSE 0.004 209 -4.134
 1890385 1890386 Bcen2424_0232 Bcen2424_0233 FALSE 0.284 67 -0.228
 1890387 1890388 Bcen2424_0234 Bcen2424_0235 FALSE 0 495 0.172
 1890388 1890389 Bcen2424_0235 Bcen2424_0236 FALSE 0.188 104 0.003
 1890389 1890390 Bcen2424_0236 Bcen2424_0237 TRUE 0.847 -3 -0.452
 1890390 1890391 Bcen2424_0237 Bcen2424_0238 TRUE 0.871 25 3.637
 1890391 1890392 Bcen2424_0238 Bcen2424_0239 FALSE 0.001 262 -7.754
 1890392 1890393 Bcen2424_0239 Bcen2424_0240 TRUE 0.883 26 4.35
 1890393 1890394 Bcen2424_0240 Bcen2424_0241 TRUE 0.927 133 90.23
 1890399 1890400 Bcen2424_0246 Bcen2424_0247 FALSE 0.276 145 0.407
 1890404 1890405 Bcen2424_0251 Bcen2424_0252 TRUE 0.942 93 95.441
 1890405 1890406 Bcen2424_0252 Bcen2424_0253 FALSE 0.258 193 89.286
 1890406 1890407 Bcen2424_0253 Bcen2424_0254 TRUE 0.998 14 206.538
 1890407 1890408 Bcen2424_0254 Bcen2424_0255 TRUE 0.733 17 -1.442
 1890408 1890409 Bcen2424_0255 Bcen2424_0256 TRUE 0.993 34 60.422
 1890409 1890410 Bcen2424_0256 Bcen2424_0257 TRUE 0.997 31 173.367