VIMSS Operon Predictions for Burkholderia mallei JHU

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 2416128 2416129 BmalJ_02000003 BmalJ_02000004 FALSE 0.417 23 0
 2416130 2416131 BmalJ_02000005 BmalJ_02000006 FALSE 0.007 220 -8.635
 2416133 2416134 BmalJ_02000008 BmalJ_02000009 TRUE 0.985 5 33.742
 2416136 2416137 BmalJ_02000011 BmalJ_02000012 FALSE 0.002 563 0
 2416138 2416139 BmalJ_02000013 BmalJ_02000014 TRUE 0.99 41 6.804
 2416140 2416141 BmalJ_02000015 BmalJ_02000016 TRUE 0.545 213 128.934
 2416141 2416142 BmalJ_02000016 BmalJ_02000017 FALSE 0.026 84 -9.489
 2416142 2416143 BmalJ_02000017 BmalJ_02000018 FALSE 0.001 402 -14.27
 2416143 2416144 BmalJ_02000018 BmalJ_02000019 FALSE 0.001 366 -8.756
 2416145 2416146 BmalJ_02000020 BmalJ_02000021 TRUE 0.941 -3 7.579
 2416146 2416147 BmalJ_02000021 BmalJ_02000022 FALSE 0.013 192 2.53
 2416147 2416148 BmalJ_02000022 BmalJ_02000023 FALSE 0.004 251 -10.027
 2416148 2416149 BmalJ_02000023 BmalJ_02000024 FALSE 0.086 0 -3.384
 2416149 2416150 BmalJ_02000024 BmalJ_02000025 FALSE 0.086 0 -19.31
 2416150 2416151 BmalJ_02000025 BmalJ_02000026 FALSE 0.018 151 -2.365
 2416152 2416153 BmalJ_02000027 BmalJ_02000028 FALSE 0.017 125 -3.384
 2416153 2416154 BmalJ_02000028 BmalJ_02000029 FALSE 0.076 40 3.155
 2416154 2416155 BmalJ_02000029 BmalJ_02000030 FALSE 0.369 69 0
 2416155 2416156 BmalJ_02000030 BmalJ_02000031 FALSE 0.196 96 0
 2416158 2416159 BmalJ_02000033 BmalJ_02000034 TRUE 0.683 82 32.011
 2416159 2416160 BmalJ_02000034 BmalJ_02000035 TRUE 0.779 15 -2.821
 2416162 2416163 BmalJ_02000037 BmalJ_02000038 TRUE 0.651 202 -3.142
 2416165 2416166 BmalJ_02000040 BmalJ_02000041 TRUE 0.543 114 2.501
 2416168 2416169 BmalJ_02000043 BmalJ_02000044 FALSE 0.01 277 2.248
 2416169 2416170 BmalJ_02000044 BmalJ_02000045 TRUE 0.744 5 -1.004
 2416171 2416172 BmalJ_02000046 BmalJ_02000047 FALSE 0.002 297 0.585
 2416172 2416173 BmalJ_02000047 BmalJ_02000048 TRUE 0.998 0 388.154
 2416173 2416174 BmalJ_02000048 BmalJ_02000049 TRUE 0.996 63 326.475
 2416174 2416175 BmalJ_02000049 BmalJ_02000050 TRUE 0.997 -19 371.869
 2416176 2416177 BmalJ_02000051 BmalJ_02000052 FALSE 0.196 96 0
 2416178 2416179 BmalJ_02000053 BmalJ_02000054 FALSE 0 1098 -32.847
 2416179 2416180 BmalJ_02000054 BmalJ_02000055 FALSE 0 3566 -15.86
 2416180 2416181 BmalJ_02000055 BmalJ_02000056 TRUE 0.801 4 6.262
 2416181 2416182 BmalJ_02000056 BmalJ_02000057 TRUE 0.682 60 1.409
 2416182 2416183 BmalJ_02000057 BmalJ_02000058 FALSE 0.004 2754 -87.579
 2416183 2416184 BmalJ_02000058 BmalJ_02000059 TRUE 0.708 108 0.085
 2416184 2416185 BmalJ_02000059 BmalJ_02000060 FALSE 0.049 779 9.834
 2416185 2416186 BmalJ_02000060 BmalJ_02000061 TRUE 0.994 12 497.533
 2416188 2416189 BmalJ_02000063 BmalJ_02000064 TRUE 0.96 15 6.78
 2416189 2416190 BmalJ_02000064 BmalJ_02000065 TRUE 0.988 92 508.786
 2416190 2416191 BmalJ_02000065 BmalJ_02000066 TRUE 0.987 81 125.838
 2416191 2416192 BmalJ_02000066 BmalJ_02000067 TRUE 0.979 -13 67.944
 2416192 2416193 BmalJ_02000067 BmalJ_02000068 TRUE 0.988 -3 320.604
 2416193 2416194 BmalJ_02000068 BmalJ_02000069 FALSE 0.416 206 2.252
 2416196 2416197 BmalJ_02000071 BmalJ_02000072 TRUE 0.996 93 665.351
 2416197 2416198 BmalJ_02000072 BmalJ_02000073 FALSE 0 590 -0.169
 2416198 2416199 BmalJ_02000073 BmalJ_02000074 FALSE 0 1211 -14.548
 2416201 2416202 BmalJ_02000076 BmalJ_02000077 FALSE 0 644 0.239
 2416202 2416203 BmalJ_02000077 BmalJ_02000078 FALSE 0.116 263 0.542
 2416203 2416204 BmalJ_02000078 BmalJ_02000079 TRUE 0.692 78 1.979
 2416204 2416205 BmalJ_02000079 BmalJ_02000080 TRUE 0.554 93 1.821
 2416205 2416206 BmalJ_02000080 BmalJ_02000081 FALSE 0 702 0.337
 2416207 2416208 BmalJ_02000082 BmalJ_02000083 FALSE 0.365 182 0.343
 2416208 2416209 BmalJ_02000083 BmalJ_02000084 TRUE 0.95 -3 31.468
 2416209 2416210 BmalJ_02000084 BmalJ_02000085 FALSE 0.001 350 -0.093
 2416210 2416211 BmalJ_02000085 BmalJ_02000086 FALSE 0 474 0.336
 2416211 2416212 BmalJ_02000086 BmalJ_02000087 FALSE 0.086 130 -4.991
 2416212 2416213 BmalJ_02000087 BmalJ_02000088 FALSE 0.004 491 -17.279
 2416214 2416215 BmalJ_02000089 BmalJ_02000090 FALSE 0 624 -2.036
 2416215 2416216 BmalJ_02000090 BmalJ_02000091 FALSE 0.496 120 1.201
 2416217 2416218 BmalJ_02000092 BmalJ_02000093 FALSE 0.016 98 -4.649
 2416218 2416219 BmalJ_02000093 BmalJ_02000094 FALSE 0.199 74 -0.825
 2416220 2416221 BmalJ_02000095 BmalJ_02000098 TRUE 0.651 260 40.953
 2416221 2416222 BmalJ_02000098 BmalJ_02000099 TRUE 0.979 33 22.227
 2416222 2416223 BmalJ_02000099 BmalJ_02000100 TRUE 0.935 48 18.851
 2416223 2416224 BmalJ_02000100 BmalJ_02000101 FALSE 0 665 -6.432
 2416224 2416225 BmalJ_02000101 BmalJ_02000102 FALSE 0.306 185 0.33
 2416225 2416226 BmalJ_02000102 BmalJ_02000103 FALSE 0.001 383 -3.231
 2416226 2416227 BmalJ_02000103 BmalJ_02000104 TRUE 0.998 29 173.785
 2416232 2416233 BmalJ_02000109 BmalJ_02000110 TRUE 0.844 53 1.957
 2416233 2416234 BmalJ_02000110 BmalJ_02000111 FALSE 0.044 428 -8.752
 2416234 2416235 BmalJ_02000111 BmalJ_02000112 FALSE 0.065 182 -3.522
 2416235 2416236 BmalJ_02000112 BmalJ_02000113 FALSE 0.188 295 1.323
 2416237 2416238 BmalJ_02000114 BmalJ_02000115 TRUE 0.993 -3 97.267
 2416238 2416239 BmalJ_02000115 BmalJ_02000116 TRUE 0.909 25 0.589
 2416239 2416240 BmalJ_02000116 BmalJ_02000117 TRUE 0.83 -3 1.456
 2416240 2416241 BmalJ_02000117 BmalJ_02000118 TRUE 0.959 43 41.168
 2416241 2416242 BmalJ_02000118 BmalJ_02000119 TRUE 0.974 20 49.812
 2416244 2416245 BmalJ_02000121 BmalJ_02000122 FALSE 0 509 -2.954
 2416248 2416249 BmalJ_02000125 BmalJ_02000126 TRUE 0.815 124 118.974
 2416249 2416250 BmalJ_02000126 BmalJ_02000127 TRUE 0.653 104 5.719
 2416251 2416252 BmalJ_02000128 BmalJ_02000129 TRUE 0.667 71 1.212
 2416252 2416253 BmalJ_02000129 BmalJ_02000130 FALSE 0.495 93 1.205
 2416253 2416254 BmalJ_02000130 BmalJ_02000131 FALSE 0 1150 -91.844
 2416254 2416255 BmalJ_02000131 BmalJ_02000132 TRUE 0.991 7 107.643
 2416256 2416257 BmalJ_02000133 BmalJ_02000134 TRUE 0.592 106 -15.471
 2416257 2416258 BmalJ_02000134 BmalJ_02000135 TRUE 0.942 177 296.745
 2416258 2416259 BmalJ_02000135 BmalJ_02000136 TRUE 0.994 65 172.302
 2416259 2416260 BmalJ_02000136 BmalJ_02000137 TRUE 0.984 -3 70.68
 2416260 2416261 BmalJ_02000137 BmalJ_02000138 TRUE 0.897 133 101.447
 2416261 2416262 BmalJ_02000138 BmalJ_02000139 TRUE 0.991 18 333.225
 2416262 2416263 BmalJ_02000139 BmalJ_02000140 TRUE 0.989 20 257.968
 2416263 2416264 BmalJ_02000140 BmalJ_02000141 FALSE 0.002 598 0
 2416264 2416265 BmalJ_02000141 BmalJ_02000142 FALSE 0.196 96 0
 2416265 2416266 BmalJ_02000142 BmalJ_02000143 FALSE 0.227 73 0
 2416266 2416267 BmalJ_02000143 BmalJ_02000144 FALSE 0.002 583 0
 2416267 2416268 BmalJ_02000144 BmalJ_02000145 FALSE 0.149 192 0
 2416269 2416270 BmalJ_02000146 BmalJ_02000147 FALSE 0.021 538 -18.812
 2416270 2416271 BmalJ_02000147 BmalJ_02000148 TRUE 0.99 67 87.094
 2416271 2416272 BmalJ_02000148 BmalJ_02000149 TRUE 0.988 61 131.256
 2416272 2416273 BmalJ_02000149 BmalJ_02000150 TRUE 0.989 7 405.89
 2416274 2416275 BmalJ_02000151 BmalJ_02000152 TRUE 0.989 -3 376.578
 2416275 2416276 BmalJ_02000152 BmalJ_02000153 TRUE 0.989 -3 382.326
 2416276 2416277 BmalJ_02000153 BmalJ_02000154 FALSE 0 2101 -92.289
 2416277 2416278 BmalJ_02000154 BmalJ_02000155 FALSE 0 449 1.249
 2416278 2416279 BmalJ_02000155 BmalJ_02000156 FALSE 0.491 181 1.48
 2416282 2416283 BmalJ_02000160 BmalJ_02000161 FALSE 0.014 191 0.341
 2416283 2416284 BmalJ_02000161 BmalJ_02000162 TRUE 0.997 13 426.935
 2416284 2416285 BmalJ_02000162 BmalJ_02000163 TRUE 0.987 74 197.083
 2416285 2416286 BmalJ_02000163 BmalJ_02000164 FALSE 0.451 208 2.385
 2416290 2416291 BmalJ_02000168 BmalJ_02000169 TRUE 0.546 198 216.484
 2416291 2416292 BmalJ_02000169 BmalJ_02000170 TRUE 0.982 58 92.585
 2416293 2416294 BmalJ_02000171 BmalJ_02000172 FALSE 0.005 478 -1.4
 2416294 2416295 BmalJ_02000172 BmalJ_02000173 FALSE 0.419 26 -0.11
 2416296 2416297 BmalJ_02000174 BmalJ_02000175 TRUE 0.946 125 79.49
 2416297 2416298 BmalJ_02000175 BmalJ_02000176 TRUE 0.995 2 151.056
 2416298 2416299 BmalJ_02000176 BmalJ_02000177 TRUE 0.857 253 128.471
 2416300 2416301 BmalJ_02000178 BmalJ_02000179 TRUE 0.978 88 316.178
 2416301 2416302 BmalJ_02000179 BmalJ_02000180 TRUE 0.962 41 2.53
 2416302 2416303 BmalJ_02000180 BmalJ_02000181 FALSE 0 471 -4.099
 2416303 2416304 BmalJ_02000181 BmalJ_02000182 TRUE 0.905 86 20.126
 2416304 2416305 BmalJ_02000182 BmalJ_02000183 TRUE 0.971 47 -0.301
 2416305 2416306 BmalJ_02000183 BmalJ_02000184 TRUE 0.866 71 -1.157
 2416306 2416307 BmalJ_02000184 BmalJ_02000185 FALSE 0.033 78 -0.57
 2416309 2416310 BmalJ_02000187 BmalJ_02000188 FALSE 0.396 100 0.554
 2416310 2416311 BmalJ_02000188 BmalJ_02000189 FALSE 0 500 1.701
 2416311 2416312 BmalJ_02000189 BmalJ_02000190 TRUE 0.923 29 -66.773
 2416312 2416313 BmalJ_02000190 BmalJ_02000191 TRUE 0.996 15 464.296
 2416313 2416314 BmalJ_02000191 BmalJ_02000192 FALSE 0.145 463 462.45
 2416314 2416315 BmalJ_02000192 BmalJ_02000193 TRUE 0.997 80 517.317
 2416315 2416316 BmalJ_02000193 BmalJ_02000194 TRUE 0.991 -3 472.016
 2416316 2416317 BmalJ_02000194 BmalJ_02000195 TRUE 0.903 65 -34.164
 2416319 2416320 BmalJ_02000197 BmalJ_02000198 TRUE 0.791 62 -8.138
 2416321 2416322 BmalJ_02000199 BmalJ_02000200 FALSE 0.023 192 -0.223
 2416323 2416324 BmalJ_02000201 BmalJ_02000202 FALSE 0.027 83 1.05
 2416325 2416326 BmalJ_02000203 BmalJ_02000204 TRUE 0.894 24 25.846
 2416328 2416329 BmalJ_02000206 BmalJ_02000207 FALSE 0.127 232 0.298
 2416331 2416332 BmalJ_02000209 BmalJ_02000210 TRUE 0.768 77 3.607
 2416333 2416334 BmalJ_02000211 BmalJ_02000212 TRUE 0.638 82 1.582
 2416334 2416335 BmalJ_02000212 BmalJ_02000213 FALSE 0.018 134 -9.621
 2416335 2416336 BmalJ_02000213 BmalJ_02000214 TRUE 0.972 15 26.914
 2416338 2416339 BmalJ_02000216 BmalJ_02000217 TRUE 0.965 95 152.498
 2416339 2416340 BmalJ_02000217 BmalJ_02000218 TRUE 0.978 135 154.298
 2416340 2416341 BmalJ_02000218 BmalJ_02000219 TRUE 0.987 -3 254.547
 2416341 2416342 BmalJ_02000219 BmalJ_02000220 TRUE 0.988 5 249.864
 2416342 2416343 BmalJ_02000220 BmalJ_02000221 FALSE 0.266 251 40.326
 2416343 2416344 BmalJ_02000221 BmalJ_02000222 TRUE 0.771 222 159.421
 2416344 2416345 BmalJ_02000222 BmalJ_02000223 TRUE 0.966 90 295.966
 2416345 2416346 BmalJ_02000223 BmalJ_02000224 TRUE 0.992 101 284.335
 2416346 2416347 BmalJ_02000224 BmalJ_02000225 TRUE 0.993 18 106.829
 2416347 2416348 BmalJ_02000225 BmalJ_02000226 TRUE 0.997 -13 151.012
 2416348 2416349 BmalJ_02000226 BmalJ_02000227 TRUE 0.999 31 350.97
 2416350 2416351 BmalJ_02000228 BmalJ_02000229 FALSE 0.077 38 -5.297
 2416351 2416352 BmalJ_02000229 BmalJ_02000230 TRUE 0.516 16 -1.683
 2416352 2416353 BmalJ_02000230 BmalJ_02000231 TRUE 0.628 181 -13.136
 2416354 2416355 BmalJ_02000232 BmalJ_02000233 TRUE 0.889 -3 1.288
 2416355 2416356 BmalJ_02000233 BmalJ_02000234 TRUE 0.554 134 1.55
 2416356 2416357 BmalJ_02000234 BmalJ_02000235 TRUE 0.964 15 -12.333
 2416357 2416358 BmalJ_02000235 BmalJ_02000236 TRUE 0.927 28 -24.59
 2416358 2416359 BmalJ_02000236 BmalJ_02000237 FALSE 0.01 373 0
 2416359 2416360 BmalJ_02000237 BmalJ_02000238 FALSE 0.196 96 0
 2416360 2416361 BmalJ_02000238 BmalJ_02000239 FALSE 0.018 280 0
 2416362 2416363 BmalJ_02000240 BmalJ_02000241 TRUE 0.721 21 0.325
 2416363 2416364 BmalJ_02000241 BmalJ_02000242 FALSE 0 533 0.324
 2416365 2416366 BmalJ_02000243 BmalJ_02000244 FALSE 0.018 168 -4.225
 2416366 2416367 BmalJ_02000244 BmalJ_02000245 FALSE 0.004 254 -25.55
 2416367 2416368 BmalJ_02000245 BmalJ_02000246 TRUE 0.981 59 54.594
 2416368 2416369 BmalJ_02000246 BmalJ_02000247 FALSE 0 717 -10.105
 2416373 2416374 BmalJ_02000251 BmalJ_02000252 TRUE 0.874 5 2.321
 2416374 2416375 BmalJ_02000252 BmalJ_02000253 FALSE 0.001 311 1.711
 2416376 2416377 BmalJ_02000254 BmalJ_02000255 FALSE 0.379 189 2.53
 2416377 2416378 BmalJ_02000255 BmalJ_02000256 FALSE 0.003 271 2.148
 2416378 2416379 BmalJ_02000256 BmalJ_02000257 FALSE 0.088 5 -14.627
 2416380 2416381 BmalJ_02000258 BmalJ_02000259 FALSE 0.196 96 0
 2416384 2416385 BmalJ_02000262 BmalJ_02000263 TRUE 0.984 3 245.846
 2416386 2416387 BmalJ_02000264 BmalJ_02000265 FALSE 0.07 330 155.555
 2416387 2416388 BmalJ_02000265 BmalJ_02000266 TRUE 0.999 18 391.831
 2416388 2416389 BmalJ_02000266 BmalJ_02000267 TRUE 0.615 162 -36.585
 2416390 2416391 BmalJ_02000268 BmalJ_02000269 TRUE 0.998 -3 66.744
 2416391 2416392 BmalJ_02000269 BmalJ_02000270 FALSE 0.039 169 -5.14
 2416392 2416393 BmalJ_02000270 BmalJ_02000271 FALSE 0.062 200 4.791
 2416393 2416394 BmalJ_02000271 BmalJ_02000272 FALSE 0.48 12 4.889
 2416394 2416395 BmalJ_02000272