VIMSS Operon Predictions for Acidothermus cellulolyticus 11B

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 1953679 1953680 Acel_0001 Acel_0002 TRUE 0.759 404 1060.639
 1953680 1953681 Acel_0002 Acel_0003 TRUE 0.992 13 959.379
 1953681 1953682 Acel_0003 Acel_0004 TRUE 0.99 -10 34.211
 1953682 1953683 Acel_0004 Acel_0005 TRUE 0.614 248 30.652
 1953683 1953684 Acel_0005 Acel_0006 TRUE 0.993 39 322.893
 1953684 1953685 Acel_0006 Acel_0007 TRUE 0.796 95 8.856
 1953685 1377539 Acel_0007 Acel_R0001 FALSE 0.317 71 0
 1377539 1377540 Acel_R0001 Acel_R0002 FALSE 0.101 188 0
 1377540 1953686 Acel_R0002 Acel_0008 FALSE 0.08 233 0
 1953686 1953687 Acel_0008 Acel_0009 FALSE 0.489 29 0
 1953687 1953688 Acel_0009 Acel_0010 TRUE 0.727 -3 0
 1953690 1953691 Acel_0012 Acel_0013 TRUE 0.8 4 7.563
 1953693 1953694 Acel_0015 Acel_0016 TRUE 0.901 -3 2.338
 1953694 1953695 Acel_0016 Acel_0017 FALSE 0.475 5 0
 1953695 1953696 Acel_0017 Acel_0018 TRUE 0.508 83 0.894
 1953697 1953698 Acel_0019 Acel_0020 TRUE 0.975 -3 9.175
 1953698 1953699 Acel_0020 Acel_0021 TRUE 0.995 -3 95.339
 1953699 1953700 Acel_0021 Acel_0022 TRUE 0.989 -3 35.951
 1953700 1953701 Acel_0022 Acel_0023 TRUE 0.955 47 35.951
 1953701 1953702 Acel_0023 Acel_0024 TRUE 0.978 9 45.194
 1953703 1953704 Acel_0025 Acel_0026 FALSE 0.489 29 0
 1953704 1953705 Acel_0026 Acel_0027 FALSE 0.021 597 -0.495
 1953705 1953706 Acel_0027 Acel_0028 FALSE 0.041 192 -0.804
 1953708 1953709 Acel_0030 Acel_0031 FALSE 0.355 31 -7.725
 1953709 1953710 Acel_0031 Acel_0032 TRUE 0.984 25 101.246
 1953710 1953711 Acel_0032 Acel_0033 TRUE 0.993 1 614.651
 1953711 1953712 Acel_0033 Acel_0034 FALSE 0.064 296 0
 1953712 1953713 Acel_0034 Acel_0035 FALSE 0.065 292 0
 1377570 1377571 Acel_R0004 Acel_R0005 FALSE 0.126 154 0
 1377571 1953714 Acel_R0005 Acel_0036 FALSE 0.11 169 0
 1953715 1953716 Acel_0037 Acel_0038 FALSE 0.151 130 0
 1953719 1953720 Acel_0041 Acel_0042 FALSE 0.159 142 0
 1953720 1953721 Acel_0042 Acel_0043 FALSE 0.157 131 0
 1953721 1953722 Acel_0043 Acel_0044 FALSE 0.212 107 0
 1953722 1953723 Acel_0044 Acel_0045 TRUE 0.808 -16 0
 1953723 1953724 Acel_0045 Acel_0046 FALSE 0.182 115 0
 1953726 1953727 Acel_0048 Acel_0049 FALSE 0.103 121 -2.831
 1953727 1953728 Acel_0049 Acel_0050 TRUE 0.928 11 6.95
 1953728 1953729 Acel_0050 Acel_0051 TRUE 0.923 9 6.407
 1953730 1953731 Acel_0052 Acel_0053 FALSE 0.102 163 -15.429
 1953731 1953732 Acel_0053 Acel_0054 FALSE 0.283 4 -3.794
 1953732 1953733 Acel_0054 Acel_0055 TRUE 0.941 -3 12.235
 1953733 1953734 Acel_0055 Acel_0056 FALSE 0.279 2 -3.39
 1953735 1953736 Acel_0057 Acel_0058 TRUE 0.959 -3 25.234
 1953736 1953737 Acel_0058 Acel_0059 FALSE 0.032 446 -7.77
 1953737 1953738 Acel_0059 Acel_0060 TRUE 0.904 0 26.095
 1953738 1953739 Acel_0060 Acel_0061 FALSE 0.023 470 -3.037
 1953739 1953740 Acel_0061 Acel_0062 TRUE 0.925 -3 4.105
 1953741 1953742 Acel_0063 Acel_0064 FALSE 0.191 111 0
 1953745 1953746 Acel_0067 Acel_0068 TRUE 0.783 -13 0
 1953746 1953747 Acel_0068 Acel_0069 TRUE 0.529 10 0
 1953747 1953748 Acel_0069 Acel_0070 FALSE 0.297 8 -0.676
 1953748 1953749 Acel_0070 Acel_0071 FALSE 0.303 23 -2.396
 1953751 1953752 Acel_0073 Acel_0074 FALSE 0.335 64 0
 1953752 1953753 Acel_0074 Acel_0075 FALSE 0.125 155 0
 1953754 1953755 Acel_0076 Acel_0077 TRUE 0.529 10 0
 1953756 1953757 Acel_0078 Acel_0079 TRUE 0.612 245 32.425
 1953757 1953758 Acel_0079 Acel_0080 TRUE 0.727 -3 0
 1953758 1953759 Acel_0080 Acel_0081 TRUE 0.995 -3 34.473
 1953759 1953760 Acel_0081 Acel_0082 TRUE 0.969 43 22.285
 1953760 1953761 Acel_0082 Acel_0083 TRUE 0.993 29 231.882
 1953763 1953764 Acel_0085 Acel_0086 FALSE 0.112 166 0
 1953764 1953765 Acel_0086 Acel_0087 FALSE 0.264 88 0
 1953765 1953766 Acel_0087 Acel_0088 FALSE 0.027 288 -1.403
 1953766 1953767 Acel_0088 Acel_0089 TRUE 0.951 134 63.002
 1953768 1953769 Acel_0090 Acel_0091 TRUE 0.851 97 -25.352
 1953769 1953770 Acel_0091 Acel_0092 TRUE 0.996 8 624.262
 1953770 1953771 Acel_0092 Acel_0093 TRUE 0.998 -3 1131.885
 1953771 1953772 Acel_0093 Acel_0094 TRUE 0.998 -7 985.762
 1953773 1953774 Acel_0095 Acel_0096 TRUE 0.531 28 0
 1953775 1953776 Acel_0097 Acel_0098 TRUE 0.808 23 3.797
 1953776 1953777 Acel_0098 Acel_0099 TRUE 0.751 10 0.676
 1953777 1953778 Acel_0099 Acel_0100 FALSE 0.031 605 -4.411
 1953778 1953779 Acel_0100 Acel_0101 FALSE 0.058 199 -1.295
 1953781 1953782 Acel_0103 Acel_0104 FALSE 0.053 196 -2.995
 1953783 1953784 Acel_0105 Acel_0106 TRUE 0.988 -3 40.651
 1953784 1953785 Acel_0106 Acel_0107 TRUE 0.775 -3 4.189
 1953786 1953787 Acel_0108 Acel_0109 FALSE 0.034 248 -1.585
 1953787 1953788 Acel_0109 Acel_0110 TRUE 0.941 6 7.857
 1953788 1953789 Acel_0110 Acel_0111 FALSE 0.115 111 -0.446
 1953790 1953791 Acel_0112 Acel_0113 FALSE 0.331 5 -0.465
 1953791 1953792 Acel_0113 Acel_0114 FALSE 0.3 38 -1.489
 1953792 1953793 Acel_0114 Acel_0115 FALSE 0.199 161 -0.135
 1953795 1953796 Acel_0117 Acel_0118 FALSE 0.098 102 -0.824
 1953797 1953798 Acel_0119 Acel_0120 FALSE 0.464 36 0
 1953798 1953799 Acel_0120 Acel_0121 FALSE 0.407 45 0
 1953799 1953800 Acel_0121 Acel_0122 TRUE 0.507 7 0
 1953800 1953801 Acel_0122 Acel_0123 FALSE 0.346 60 0
 1953804 1953805 Acel_0127 Acel_0128 FALSE 0.069 326 0
 1953807 1953808 Acel_0130 Acel_0131 TRUE 0.928 125 88.82
 1953808 1953809 Acel_0131 Acel_0132 TRUE 0.965 108 313.85
 1953809 1953810 Acel_0132 Acel_0133 TRUE 0.992 -3 30.018
 1953813 1953814 Acel_0136 Acel_0137 FALSE 0.046 168 -1.413
 1953815 1953816 Acel_0138 Acel_0139 FALSE 0.049 212 -4.732
 1953816 1953817 Acel_0139 Acel_0140 TRUE 0.746 286 73.785
 1953818 1953819 Acel_0141 Acel_0142 FALSE 0.165 128 0
 1953819 1953820 Acel_0142 Acel_0143 FALSE 0.11 168 0
 1953821 1953822 Acel_0144 Acel_0145 FALSE 0.091 236 0
 1953822 1953823 Acel_0145 Acel_0146 FALSE 0.058 399 0
 1953823 1953824 Acel_0146 Acel_0147 TRUE 0.545 11 0
 1953824 1953825 Acel_0147 Acel_0148 FALSE 0.037 277 -1.545
 1953826 1953827 Acel_0149 Acel_0150 FALSE 0.055 150 -0.887
 1953829 1953830 Acel_0152 Acel_0153 TRUE 0.929 -3 6.301
 1953830 1377691 Acel_0153 Acel_R0009 FALSE 0.048 599 0
 1377691 1953831 Acel_R0009 Acel_0154 FALSE 0.048 702 0
 1953833 1953834 Acel_0156 Acel_0157 FALSE 0.318 164 3.696
 1953834 1953835 Acel_0157 Acel_0158 FALSE 0.107 108 -4.389
 1953836 1953837 Acel_0159 Acel_0160 TRUE 0.756 15 0
 1953838 1953839 Acel_0161 Acel_0162 FALSE 0.234 97 0
 1953839 1953840 Acel_0162 Acel_0163 FALSE 0.259 90 0
 1953840 1953841 Acel_0163 Acel_0164 TRUE 0.936 -3 -14.946
 1953842 1953843 Acel_0165 Acel_0166 FALSE 0.361 138 1.788
 1953843 1953844 Acel_0166 Acel_0167 TRUE 0.988 -3 19.48
 1953844 1953845 Acel_0167 Acel_0168 TRUE 0.996 -3 236.275
 1953845 1953846 Acel_0168 Acel_0169 TRUE 0.96 136 199.035
 1953846 1953847 Acel_0169 Acel_0170 FALSE 0.076 152 -3.879
 1953847 1953848 Acel_0170 Acel_0171 FALSE 0.206 288 2.78
 1377710 1953849 Acel_R0010 Acel_0172 FALSE 0.222 101 0
 1953849 1953850 Acel_0172 Acel_0173 TRUE 0.53 11 0
 1953851 1953852 Acel_0174 Acel_0175 TRUE 0.665 210 81.987
 1953852 1953853 Acel_0175 Acel_0176 TRUE 0.994 -3 334.656
 1953853 1953854 Acel_0176 Acel_0177 TRUE 0.702 232 33.133
 1953854 1953855 Acel_0177 Acel_0178 TRUE 0.856 121 35.172
 1953855 1953856 Acel_0178 Acel_0179 FALSE 0.077 285 0
 1953856 1953857 Acel_0179 Acel_0180 FALSE 0.086 591 0
 1953857 1953858 Acel_0180 Acel_0181 FALSE 0.172 130 0
 1953859 1953860 Acel_0182 Acel_0183 FALSE 0.255 194 0.597
 1953861 1953862 Acel_0184 Acel_0185 FALSE 0.289 78 0
 1953863 1953864 Acel_0187 Acel_0188 TRUE 0.507 24 0
 1953864 1953865 Acel_0188 Acel_0189 TRUE 0.96 62 127.812
 1953865 1953866 Acel_0189 Acel_0190 TRUE 0.984 18 150.536
 1953866 1953867 Acel_0190 Acel_0191 FALSE 0.083 171 -8.542
 1953867 1953868 Acel_0191 Acel_0192 FALSE 0.15 106 -5.64
 1953868 1953869 Acel_0192 Acel_0193 TRUE 0.935 73 95.743
 1953869 1953870 Acel_0193 Acel_0194 TRUE 0.903 85 34.889
 1953870 1953871 Acel_0194 Acel_0195 TRUE 0.994 -3 73.219
 1953873 1953874 Acel_0197 Acel_0198 FALSE 0.141 102 -4.683
 1953876 1953877 Acel_0200 Acel_0201 TRUE 0.65 147 32.198
 1953877 1953878 Acel_0201 Acel_0202 TRUE 0.632 137 28.728
 1953878 1953879 Acel_0202 Acel_0203 TRUE 0.896 115 38.077
 1953879 1953880 Acel_0203 Acel_0204 TRUE 0.724 405 260.6
 1953880 1953881 Acel_0204 Acel_0205 TRUE 0.965 3 24.12
 1953881 1953882 Acel_0205 Acel_0206 FALSE 0.049 167 -2.261
 1953882 1953883 Acel_0206 Acel_0207 FALSE 0.468 2 0.658
 1953883 1953884 Acel_0207 Acel_0208 TRUE 0.993 -3 28.997
 1953884 1953885 Acel_0208 Acel_0209 TRUE 0.91 -3 2.948
 1953885 1953886 Acel_0209 Acel_0210 FALSE 0.239 76 -11.792
 1953886 1953887 Acel_0210 Acel_0211 TRUE 0.993 -3 55.572
 1953887 1953888 Acel_0211 Acel_0212 TRUE 0.99 3 562.863
 1953888 1953889 Acel_0212 Acel_0213 TRUE 0.597 195 -0.976
 1953889 1953890 Acel_0213 Acel_0214 TRUE 0.995 9 456.418
 1953890 1953891 Acel_0214 Acel_0215 TRUE 0.961 27 8.706
 1953891 1953892 Acel_0215 Acel_0216 TRUE 0.946 33 -0.301
 1953892 1953893 Acel_0216 Acel_0217 FALSE 0.471 9 -8.882
 1953893 1953894 Acel_0217 Acel_0218 FALSE 0.03 463 -6.666
 1953898 1953899 Acel_0222 Acel_0223 TRUE 0.988 -3 14.492
 1953899 1953900 Acel_0223 Acel_0224 TRUE 0.784 112 2.872
 1953900 1953901 Acel_0224 Acel_0225 FALSE 0.284 80 0
 1953901 1953902 Acel_0225 Acel_0226 FALSE 0.368 11 -5.044
 1953904 1953905 Acel_0228 Acel_0229 TRUE 0.949 101 155.643
 1953905 1953906 Acel_0229 Acel_0230 FALSE 0.32 8 -1.153
 1953907 1953908 Acel_0231 Acel_0232 FALSE 0.272 47 -5.327
 1953908 1953909 Acel_0232 Acel_0233 FALSE 0.066 291 0
 1953909 1953910 Acel_0233 Acel_0234 FALSE 0.451 3 0
 1953910 1953911 Acel_0234 Acel_0235 FALSE 0.317 0 -2.248
 1953911 1953912 Acel_0235 Acel_0236 TRUE 0.978 83 61.04
 1953912 1953913 Acel_0236 Acel_0237 TRUE 0.997 -3 110.583
 1953913 1953914 Acel_0237 Acel_0238 TRUE 0.998 -3 300.266
 1953914 1953915 Acel_0238 Acel_0239 TRUE 0.897 -3 1.847
 1953915 1953916 Acel_0239 Acel_0240 FALSE 0.157 128 0
 1953916 1953917 Acel_0240 Acel_0241 FALSE 0.486 30 0
 1953919 1953920 Acel_0243 Acel_0244 TRUE 0.516 125 9.312
 1953920 1953921 Acel_0244 Acel_0245 FALSE 0.169 276 0.842
 1953921 1953922 Acel_0245 Acel_0246 FALSE 0.329 14 -0.071
 1953922 1953923 Acel_0246 Acel_0247 TRUE 0.928 -3 -12.341
 1953923 1953924 Acel_0247 Acel_0248 TRUE 0.862 -3 -8.92
 1953924 1953925 Acel_0248 Acel_0249 FALSE 0.215 90 -7.395
 1953926 1953927 Acel_0250 Acel_0251 TRUE 0.719 106 26.715
 1953927 1953928 Acel_0251 Acel_0252 TRUE 0.996 -3 55.571
 1953928 1953929 Acel_0252 Acel_0253 TRUE 0.996 -3 71.821
 1953929 1953930 Acel_0253 Acel_0254 TRUE 0.978 -10 16.374
 1953930 1953931 Acel_0254 Acel_0255 FALSE 0.341 76 1.737
 1953931 1953932 Acel_0255 Acel_0256 TRUE 0.972 59 49.896
 1953932 1953933 Acel_0256 Acel_0257 TRUE 0.994 -3 61.957
 1953935 1953936 Acel_0259 Acel_0260 TRUE 0.727 -3 0
 1953936