VIMSS Operon Predictions for Azotobacter vinelandii

For each pair of adjacent genes on the same strand, we report whether they are predicted to be in the same operon, and the two most important features. Small plasmids and, in draft genomes, small scaffolds, are excluded.

Also see:

Column Description
Gene1 VIMSS id of 1st gene in pair
SysName1 Systematic name of 1st gene in pair
Name1 Ordinary name of 1st gene in pair
Gene2 VIMSS id of 2nd gene in pair
SysName2 Systematic name of 2nd gene in pair
Name2 Ordinary name of 2nd gene in pair
bOp Whether the pair is predicted to lie in the same operon or not
pOp Estimated probability that the pair is in the same operon. Values near 1 or 0 are confident predictions of being in the same operon or not, while values near 0.5 are low-confidence predictions.
Sep Distance between the two genes, in base pairs
GNMinus An indicator of conservation (gene neighbor score, surprisal subtracted). Positive scores indicate conservation, and scores above 5 are generally strongly indicative of operons

 Gene1 Gene2 SysName1 SysName2 Name1 Name2 bOp pOp Sep GNMinus
 682254 682255 FALSE 0.006 836 -7.532
 682255 682256 FALSE 0.031 255 -4.472
 1023127 682258 FALSE 0.017 88 0
 682261 682262 FALSE 0.01 314 0.009
 682262 682263 FALSE 0.001 496 0.009
 682265 682266 FALSE 0.019 392 -5.304
 682269 682270 FALSE 0.089 167 -5.328
 682270 682271 FALSE 0.105 163 -10.184
 682271 682272 TRUE 0.99 2 246.204
 682273 682274 FALSE 0.014 114 -3.213
 682274 682275 FALSE 0.008 171 -3.909
 682277 682278 FALSE 0.008 171 -9.511
 682279 682280 TRUE 0.829 -7 4.946
 682280 682281 TRUE 0.858 -3 10.612
 682282 682283 TRUE 0.924 226 47.582
 682283 682284 TRUE 0.996 33 288.964
 682285 1023237 FALSE 0.063 -16 0
 682286 682287 TRUE 0.949 60 13.105
 682287 682288 FALSE 0.036 310 -6.404
 682294 682295 TRUE 0.624 201 72.8
 682296 682297 TRUE 0.829 -43 -1.322
 682297 682298 TRUE 0.507 43 0.95
 682299 682300 FALSE 0.441 3 0.95
 682300 682301 TRUE 0.905 -27 0.506
 682301 682302 FALSE 0.448 5 0.927
 682302 682303 TRUE 0.596 -3 0.905
 682303 682304 TRUE 0.641 -7 0.344
 682304 682305 FALSE 0.296 10 -0.432
 682305 682306 FALSE 0.048 -3 -2.127
 682306 682307 TRUE 0.597 -3 0.94
 682307 682308 FALSE 0.012 142 0.94
 682308 682309 TRUE 0.666 -15 0.95
 682311 682312 FALSE 0.274 31 -5.965
 682312 682313 TRUE 0.941 22 3.546
 682313 682314 FALSE 0.297 233 0.317
 682314 682315 FALSE 0.013 608 -1.447
 1023301 682319 FALSE 0.048 -3 0
 682319 682320 TRUE 0.98 -3 108.523
 682321 682322 TRUE 0.948 98 132.768
 682323 682324 FALSE 0.339 29 0.009
 682326 682327 FALSE 0.045 268 -8.955
 682327 682328 FALSE 0.458 11 -12.808
 682328 682329 FALSE 0.087 174 -6.259
 682330 682331 TRUE 0.769 -3 1.699
 682331 682332 TRUE 0.87 10 1.699
 682332 682333 TRUE 0.778 -3 1.699
 682335 1029397 pseudo FALSE 0.016 97 0
 1029397 1023337 pseudo FALSE 0 1156 0
 682336 682337 TRUE 0.9 41 -19.918
 1023343 682339 FALSE 0.001 408 0
 682339 682340 FALSE 0.401 160 -3.992
 682340 1023347 FALSE 0.001 366 0
 682341 682342 FALSE 0.021 53 -4.72
 682342 682343 FALSE 0.019 75 -13.445
 682343 682344 FALSE 0.016 95 0
 682344 682345 FALSE 0.017 89 0
 682345 1023353 FALSE 0 573 0
 682347 1029398 pseudo FALSE 0.003 257 0
 1029398 682348 pseudo FALSE 0.026 38 0
 682348 682349 TRUE 0.972 -3 127.121
 682354 682355 TRUE 0.985 -46 178.454
 682355 682356 TRUE 0.961 8 168.663
 682359 682360 FALSE 0.217 -3 0.009
 682360 682361 FALSE 0.127 3 0.009
 682362 682363 FALSE 0.045 12 -7.009
 682363 682364 FALSE 0.004 217 -4.118
 682364 682365 TRUE 0.979 -16 137.093
 682366 682367 FALSE 0.13 37 0.009
 1023384 682369 FALSE 0.001 369 0
 682372 1029290 rrf FALSE 0.002 264 0
 682374 682375 FALSE 0 909 -0.424
 682375 682376 TRUE 0.943 -3 38.672
 682377 682378 TRUE 0.866 -3 16.657
 682378 682379 TRUE 0.788 7 20.77
 682379 682380 TRUE 0.903 23 40.482
 682381 682382 FALSE 0.002 312 0
 682384 682385 TRUE 0.617 -3 1.312
 682385 682386 FALSE 0.46 44 2.109
 682386 682387 TRUE 0.903 0 44.439
 682388 682389 TRUE 0.956 -19 50.137
 682389 682390 TRUE 0.944 -3 48.671
 682390 682391 TRUE 0.927 -3 36.964
 682392 682393 TRUE 0.903 19 30.209
 682393 682394 TRUE 0.819 -3 9.147
 682397 682398 FALSE 0.001 368 0
 682398 682399 FALSE 0.013 130 -0.36
 682399 1023187 FALSE 0.091 83 0.009
 1023187 1023192 FALSE 0 1207 -4.661
 1023192 1023196 FALSE 0.105 52 0.009
 1023196 1027368 FALSE 0 1251 -4.661
 1027368 1027369 FALSE 0.013 270 0.009
 1027369 1023217 FALSE 0.156 29 0.009
 1023217 1023220 FALSE 0.253 -6 0.009
 1023220 682400 FALSE 0.097 562 0.009
 682400 1023239 FALSE 0 923 0.009
 1023239 1023246 FALSE 0 900 0.009
 1023246 1023252 FALSE 0.009 633 0.009
 1023252 682401 FALSE 0.001 475 0
 682403 682404 TRUE 0.889 148 116.682
 682405 682406 TRUE 0.996 3 966.908
 682408 682409 TRUE 0.629 0 1.833
 682409 682410 FALSE 0.155 242 2.672
 682413 682414 FALSE 0.29 110 -35.721
 682414 1023123 FALSE 0.064 -24 0.282
 682416 682417 TRUE 0.898 -3 26.824
 682417 682418 TRUE 0.929 -76 26.254
 682418 682419 TRUE 0.55 20 -18.303
 682419 682420 TRUE 0.862 146 25.415
 682421 682422 FALSE 0.202 109 -17.21
 1023138 1023140 FALSE 0.001 338 0
 682423 682424 TRUE 0.643 9 4.851
 682424 1028878 tRNA-Gly FALSE 0.003 246 0
 1028878 1028879 tRNA-Gly tRNA-Thr FALSE 0.035 24 0
 682425 1028880 tRNA-Trp FALSE 0.021 54 0
 1028880 682426 tRNA-Trp FALSE 0.023 43 0
 682426 682427 TRUE 0.983 11 217.685
 682428 682429 TRUE 0.998 1 1466.388
 682429 682430 TRUE 0.986 198 1040.467
 682430 682431 TRUE 0.997 82 1435.317
 682431 682432 TRUE 0.94 215 777.282
 682433 682434 TRUE 0.956 138 300.088
 682439 682440 TRUE 0.999 15 1298.761
 682440 682441 TRUE 0.998 -3 1325.216
 682442 682443 TRUE 0.999 17 1430.607
 682444 682445 TRUE 0.999 14 1282.182
 682445 682446 TRUE 0.999 15 1451.48
 682446 682447 TRUE 0.998 0 1129.436
 682449 682450 TRUE 0.999 13 1352.631
 682450 682451 TRUE 0.998 21 1365.393
 682452 682453 TRUE 0.988 184 643.26
 682454 682455 TRUE 0.999 11 1500.623
 682455 682456 TRUE 0.998 4 1350.285
 682457 682458 TRUE 0.998 4 1127.663
 682458 682459 TRUE 0.993 1 1418.1
 682459 682460 TRUE 0.989 29 294.248
 1029399 682467 pseudo FALSE 0.006 192 0
 682469 1029400 pseudo FALSE 0 701 0
 1029400 682470 pseudo FALSE 0.007 186 0
 682473 682474 TRUE 0.871 10 31.636
 682474 682475 TRUE 0.972 2 82.424
 682475 682476 TRUE 0.793 101 29.465
 682478 682479 TRUE 0.567 91 5.042
 682479 682480 TRUE 0.763 -3 6.686
 682482 682483 TRUE 0.992 16 222.175
 682483 682484 TRUE 0.993 97 248.997
 682484 682485 TRUE 0.995 -3 561.258
 682486 682487 TRUE 0.99 -7 236.105
 682487 682488 TRUE 0.826 -3 4.628
 682488 682489 FALSE 0.048 293 4.993
 682489 682490 FALSE 0.481 2 -12.947
 682493 682494 FALSE 0.067 127 0.009
 682496 682497 TRUE 0.987 149 421.243
 682497 682498 TRUE 0.835 61 16.796
 682499 682500 FALSE 0.329 176 4.968
 1023300 1023304 FALSE 0.035 25 0
 682502 682503 TRUE 0.999 18 934.492
 682503 682504 TRUE 0.983 23 205.703
 682504 682505 FALSE 0.207 168 0.009
 682505 1023316 FALSE 0.012 138 0
 682507 682508 FALSE 0.001 502 -0.383
 682508 682509 FALSE 0.388 39 -12.362
 682509 1029401 pseudo FALSE 0.013 124 0
 682510 682511 FALSE 0.13 113 -4.447
 682512 682513 FALSE 0.007 183 -1.398
 682513 682514 TRUE 0.515 149 -0.132
 682516 682517 FALSE 0.065 131 0.009
 682518 682519 FALSE 0.107 49 0.009
 682519 682520 FALSE 0 1589 -4.661
 682521 682522 FALSE 0.003 238 -0.241
 682522 682523 TRUE 0.544 80 6.762
 682523 682524 FALSE 0.149 211 -20.452
 682524 682525 TRUE 0.868 11 -13.653
 682525 682526 TRUE 0.994 -3 192.929
 682526 682527 TRUE 0.993 0 217.263
 682528 682529 FALSE 0.006 811 -26.66
 682532 682533 FALSE 0 699 0.009
 682534 1023352 FALSE 0.016 98 0
 682536 682537 TRUE 0.827 10 8.798
 682537 682538 FALSE 0.283 54 -15.396
 682540 1029403 pseudo FALSE 0.018 77 0
 1029403 682541 pseudo FALSE 0.005 212 0
 682542 682543 TRUE 0.994 -67 270.284
 682543 682544 TRUE 0.971 91 237.964
 682544 682545 TRUE 0.989 14 330.391
 682545 682546 TRUE 0.943 96 219.28
 682548 682549 TRUE 0.836 35 61.536
 682549 682550 TRUE 0.97 56 202.893
 1028882 1028881 tRNA-Leu tRNA-Leu FALSE 0.015 108 0
 1028881 1023376 tRNA-Leu FALSE 0.018 77 0
 682552 682553 TRUE 0.599 163 -14.778
 682553 682554 TRUE 0.997 29 499.978